BAC Information

Click to search

BAC

Clone NameB6Ng01-051F11
ChromosomeX (Build37)
Map Location 136,176,805 - 136,325,861
singlet/doubletdoublet
Overlap geneRnf128, LOC622432, Tbc1d8b, Ripply1
Upstream geneIl1rapl2, Nrk, Serpina7, 4930513O06Rik, 4933428M09Rik, Mum1l1, LOC675062, Trap1a, C330013F16Rik, EG666359, D330045A20Rik
Downstream geneCldn2, Morc4, Rbm41, Gm719, E230019M04Rik, LOC622213, LOC100041446, EG245643, LOC666424, Prps1, Tsc22d3, Mid2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051F11.bB6Ng01-051F11.g
ACCDH875014DH875015
length5511,089
definitionDH875014|Mus musculus domesticus DNA, BAC clone: B6Ng01-051F11, 5' end.DH875015|Mus musculus domesticus DNA, BAC clone: B6Ng01-051F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,325,306 - 136,325,861)(136,176,805 - 136,177,906)
sequence
aaccccattttcagaaagcctcatgctagtgagggaaaggagacaatatt
aaaagggcagggtggagaggttgagacagaagagacaggcctagacctgg
cctgtctaagtgcaggtgggagggaacgttggtgggagtgaccatgacag
gccctctccatcctagcctcctccttaccctctacctttgtttttctagg
cctccgcagtccaaatgaggagcaaatggggagctgcgagaggctttgcc
aagagagcaacgccacatgtgccatagccagaactcatggtgtgtgtgtg
ggatgaggtagggggctgcatagtcacaaactgttccccagagggaactc
cctgtcccagccacctgagaggccgagtccaagacatggcacatttggga
catttggacttgaggacagaagccccaggcaccatttgctctctgtgctt
tgggatcacgctctcattgtagagaaggccttcgctcctcttttctgagc
agcttctgcccacctttgtccttaccttctccacccagcacttttcactg
t
gaattcattttcttttacaggtgctggggacattgttgcaatcatgattg
gcaatctgaaaggaacaaaaattctgcagtctattcaaagaggcatccaa
gtcacaatggtcatcgaagtagggaaaaaacatggcccttgggtgaatca
ttattcaattttcttcgtttctgtgtcctttttcataattacggcagcaa
ccgtgggctatttcatcttttattctgctcgaagattacgaaatgcaaga
gctcaaagcaggaagcaggtttgtcatgctccctttgcctattcaaatat
ttctactgttgcacttacagtttggtttcgtggatattattatacttact
agacacagatctataaatatgcttttgaaattcagtcattcagaaaggat
atcagctctcatcatctcaagttttatattctgtcatttgtcaaagttaa
tcctgcttgattaagtcttttaacacctctaagggtacacagccaacatt
tatttctaaatgactgtaaatacatatgttgctttaaatgaactgttttc
ctaaattataagagcatttcacactcaaagaaattagaaagtacagatga
agaaatattcataaaaccaagataactgttatcactgcctgaaggtaaat
gtgcgtgtgctcacgcaagagaattaatgaatgaatggatggatgaatga
acgaatttgtattcaagtctatactctccttccacctttgtgggttccaa
gaattgaactcatgttaggcttgactgcaagtagctttacccacttagca
atcttgccagcctaaggaaggttttgcattttcatttttcacgataaaag
tgttaaactacaaacatacagtgtattcatattttacaatattttaacac
taatgctttaaaagtacaaagtttggaaagggtagcaccaaaacatccaa
gggcttataaaacagaggagtactataattctctatccctgatctgatca
catttaaaccatcttcacccctcctatatatcatctctatgatagctaaa
tttgtggccattcaatgttatctcagattgcactttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_136325306_136325861
seq2: B6Ng01-051F11.b_45_601 (reverse)

seq1  ACAGTGAAAAGTGCTGGGTGGAGAAGGTAAGGACAAAGGTGGGCAGAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAAAAGTGCTGGGTGGAGAAGGTAAGGACAAAGGTGGGCAGAAGC  50

seq1  TGCTCAG-AAAGAGGAGCGAAGGCCTTCTCTACAATGAGAGCGTGATCCC  99
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGAAAAGAGGAGCGAAGGCCTTCTCTACAATGAGAGCGTGATCCC  100

seq1  AAAGCACAGAGAGCAAATGGTGCCTGGGGCTTCTGTCCTCAAGTCCAAAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACAGAGAGCAAATGGTGCCTGGGGCTTCTGTCCTCAAGTCCAAAT  150

seq1  GTCCCAAATGTGCCATGTCTTGGACTCGGCCTCTCAGGTGGCTGGGACAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAAATGTGCCATGTCTTGGACTCGGCCTCTCAGGTGGCTGGGACAG  200

seq1  GGAGTTCCCTCTGGGGAACAGTTTGTGACTATGCAGCCCCCTACCTCATC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCCCTCTGGGGAACAGTTTGTGACTATGCAGCCCCCTACCTCATC  250

seq1  CCACACACACACCATGAGTTCTGGCTATGGCACATGTGGCGTTGCTCTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACACACACCATGAGTTCTGGCTATGGCACATGTGGCGTTGCTCTCT  300

seq1  TGGCAAAGCCTCTCGCAGCTCCCCATTTGCTCCTCATTTGGACTGCGGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAGCCTCTCGCAGCTCCCCATTTGCTCCTCATTTGGACTGCGGAG  350

seq1  GCCTAGAAAAACAAAGGTAGAGGGTAAGGAGGAGGCTAGGATGGAGAGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAAAAACAAAGGTAGAGGGTAAGGAGGAGGCTAGGATGGAGAGGG  400

seq1  CCTGTCATGGTCACTCCCACCAACGTTCCCTCCCACCTGCACTTAGACAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCATGGTCACTCCCACCAACGTTCCCTCCCACCTGCACTTAGACAG  450

seq1  GCCAGGTCTAGGCCTGTCTCTTCTGTCTCAACCTCTCCACCCTGCCCTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTCTAGGCCTGTCTCTTCTGTCTCAACCTCTCCACCCTGCCCTTT  500

seq1  TAATATTGTCTCCTTTCCCTCACTAGCATGAGGCTTTCTGAAAATGGGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTGTCTCCTTTCCCTCACTAGCATGAGGCTTTCTGAAAATGGGGT  550

seq1  TGAATTC  556
      |||||||
seq2  TGAATTC  557

seq1: chrX_136176805_136177906
seq2: B6Ng01-051F11.g_65_1153

seq1  GAATTCATTTTCTTTTACAGGTGCTGGGGACATTGTTGCAATCATGATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTCTTTTACAGGTGCTGGGGACATTGTTGCAATCATGATTG  50

seq1  GCAATCTGAAAGGAACAAAAATTCTGCAGTCTATTCAAAGAGGCATCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTGAAAGGAACAAAAATTCTGCAGTCTATTCAAAGAGGCATCCAA  100

seq1  GTCACAATGGTCATCGAAGTAGGGAAAAAACATGGCCCTTGGGTGAATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAATGGTCATCGAAGTAGGGAAAAAACATGGCCCTTGGGTGAATCA  150

seq1  TTATTCAATTTTCTTCGTTTCTGTGTCCTTTTTCATAATTACGGCAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAATTTTCTTCGTTTCTGTGTCCTTTTTCATAATTACGGCAGCAA  200

seq1  CCGTGGGCTATTTCATCTTTTATTCTGCTCGAAGATTACGAAATGCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGGGCTATTTCATCTTTTATTCTGCTCGAAGATTACGAAATGCAAGA  250

seq1  GCTCAAAGCAGGAAGCAGGTTTGTCATGCTCCCTTTGCCTATTCAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAGCAGGAAGCAGGTTTGTCATGCTCCCTTTGCCTATTCAAATAT  300

seq1  TTCTACTGTTGCACTTACAGTTTGGTTTCGTGGATATTATTATACTTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTGTTGCACTTACAGTTTGGTTTCGTGGATATTATTATACTTACT  350

seq1  AGACACAGATCTATAAATATGCTTTTGAAATTCAGTCATTCAGAAAGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGATCTATAAATATGCTTTTGAAATTCAGTCATTCAGAAAGGAT  400

seq1  ATCAGCTCTCATCATCTCAAGTTTTATATTCTGTCATTTGTCAAAGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTCTCATCATCTCAAGTTTTATATTCTGTCATTTGTCAAAGTTAA  450

seq1  TCCTGCTTGATTAAGTCTTTTAACACCTCTAAGGGTACACAGCCAACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTGATTAAGTCTTTTAACACCTCTAAGGGTACACAGCCAACATT  500

seq1  TATTTCTAAATGACTGTAAATACATATGTTGCTTTAAATGAACTGTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAAATGACTGTAAATACATATGTTGCTTTAAATGAACTGTTTTC  550

seq1  CTAAATTATAAGAGCATTTCACACTCAAAGAAATTAGAAAGTACAGATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTATAAGAGCATTTCACACTCAAAGAAATTAGAAAGTACAGATGA  600

seq1  AGAAATATTCATAAAACCAAGATAACTGTTATCACTGCCTGAAGGTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATTCATAAAACCAAGATAACTGTTATCACTGCCTGAAGGTAAAT  650

seq1  GTGCGTGTGCTCACGCAAGAGAATTAATGAATGAATGGATGGATGAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTGTGCTCACGCAAGAGAATTAATGAATGAATGGATGGATGAATGA  700

seq1  ACGAATTTGTATTCAAGTCTATACTCTCCTTCCACC-TTGTGGGTTCCAA  749
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACGAATTTGTATTCAAGTCTATACTCTCCTTCCACCTTTGTGGGTTCCAA  750

seq1  GAATTGAACTCATGTTAGGCTTGACTGCAAGTAGCTTTACCCACTTAGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAACTCATGTTAGGCTTGACTGCAAGTAGCTTTACCCACTTAGCA  800

seq1  ATCTTGCCAGCCTAAGGAAGGTTTTGCATTTTCAATTGTTCACGATAAAA  849
      ||||||||||||||||||||||||||||||||| ||| ||||||||||||
seq2  ATCTTGCCAGCCTAAGGAAGGTTTTGCATTTTC-ATTTTTCACGATAAAA  849

seq1  GTGTTAAACTACAAACATACAGTGTATTCATAATTTTACAATATTTTAAC  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTGTTAAACTACAAACATACAGTGTATTCAT-ATTTTACAATATTTTAAC  898

seq1  ACTAATGCTTTAAAAAGTACAAAGTATGGAAAGGGTAGCA-CAAAACATC  948
      ||||||||||| ||||||||||||| |||||||||||||| |||||||||
seq2  ACTAATGCTTT-AAAAGTACAAAGTTTGGAAAGGGTAGCACCAAAACATC  947

seq1  CAAGGGCTTATAAAACAGAGGAGTACCTATAATTCTCTATCCCTGATCTG  998
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAAGGGCTTATAAAACAGAGGAGTA-CTATAATTCTCTATCCCTGATCTG  996

seq1  ATCACATTTAAACCATCTTCACCCCTTCCTATAATATCAATTCTCTAATT  1048
      ||||||||||||||||||||||||| |||||| ||||||  ||||||  |
seq2  ATCACATTTAAACCATCTTCACCCC-TCCTAT-ATATCA--TCTCTA--T  1040

seq1  GATTAGCTTAAATTCTGTGGCCATTCAAATGTTATCTCAGATTGTCACTT  1098
      || |||| |||||| ||||||||||| ||||||||||||||||| |||||
seq2  GA-TAGC-TAAATT-TGTGGCCATTC-AATGTTATCTCAGATTG-CACTT  1085

seq1  TCTT  1102
      ||||
seq2  TCTT  1089