BAC Information

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BAC

Clone NameB6Ng01-052J24
ChromosomeX (Build37)
Map Location 154,831,356 - 154,948,730
singlet/doubletdoublet
Overlap genenone
Upstream genePhex, Gm1947, Sms, LOC100041181, EG625253, Mbtps2, LOC100040239, LOC667460, LOC667465, Smpx, Klhl34, Cnksr2, EG667483, LOC671033, LOC667487
Downstream geneLOC436243, LOC100040371, Rps6ka3, Eif1ay, Mtap7d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052J24.bB6Ng01-052J24.g
ACCDH875920DH875921
length1,113211
definitionDH875920|Mus musculus domesticus DNA, BAC clone: B6Ng01-052J24, 5' end.DH875921|Mus musculus domesticus DNA, BAC clone: B6Ng01-052J24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,947,617 - 154,948,730)(154,831,356 - 154,831,566)
sequence
gaattcaactgtgcttctgatttccttgtttgtcaagtgatttctaggtt
ttactcaacagctagcataacacagttgattgagaagctttttacaggtt
gggaaaccaatgaataaaattatcatatcattgtctttggaaatccaaca
tgcataatgaatgttttatataatttggacacacaattataaaatttttg
tccattcacttctgtgctccaaaagatattgtaggacagatgaaaacaaa
acaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaa
acacctttcccattctttagcaaatcatagacttcatgttaagtgagggg
ttagacagatgtgttacaaggaagtgcaatctatttgggaactgttgtgc
cctggctctccacactgtccaaacctacaaggaaaaatgaccactactat
atgtgttagaaagtagtctgaatacactattttaaaaatagtaacactac
aatactttataaaaacttgtggttgcttgtatggtagtaaatttgccttt
aaaagttgcagcagtaatattatggcttaagatgtgttttattatagtag
ctaagaggcagacatgtctatcattcctctccggccagtgtgctgaactg
gtattccaacaatgaaagctgacatgcagatgcaaattcaaggatgattc
ttatcttgaaagccaatttctatgttccaaagcatgttatttttcttcaa
tccacacacagagtttggaaataatttctctcagttattgtttcaagtag
catgtgaatgaaaactattagaaataaacactgcaatagagaaatcaatt
atagctccttttgaaagtatctagaaatcttcttcagttagtgcaaggca
ttttcatttgcatgattggaataatgtaatttttgtattagcatcatcat
ccagtcgtgaaggctaggatggaaaagccgataaaggagctggatagaag
gctcagtgggtcagagcacctgcttctctttctggggactaaccaagcaa
caattgtagcttcagttccagggcttcaacaacctctctggtccttgtgg
gtcatcaggcaca
cagtaggtgatgaaaattttgaccagctgtggctttataatggtcgctgt
atgcataaagagaaacttcaagggatgagactcttaattggttactcaat
actaatggtcagctccgaagtcacatatatgcaaacaacactaaatacat
tcagctggttgatgttatatttatatatttatgtatgtgtatgtgtgtgt
atgtgtatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_154947617_154948730
seq2: B6Ng01-052J24.b_47_1159 (reverse)

seq1  TGTGCCTGATGA-CCACAGAGGACAGGAGAGGTTGTTGGAGCCCCTGGGA  49
      |||||||||||| ||||| |||||  |||||||||||| || |||||| |
seq2  TGTGCCTGATGACCCACA-AGGACCAGAGAGGTTGTTGAAG-CCCTGGAA  48

seq1  CTGGAGCTACAAATTGTTGC-TCGTTAGTCCTCAGAAAGAGAAGCAGGTG  98
      ||| |||||| ||||||||| | |||||||| ||||||||||||||||||
seq2  CTGAAGCTAC-AATTGTTGCTTGGTTAGTCCCCAGAAAGAGAAGCAGGTG  97

seq1  CTCTGAACCACTGAGCCTTCTATCCAGCTCCTTTATCGCTTTTTCAATCC  148
      |||||| |||||||||||||||||||||||||||||||  ||||| ||||
seq2  CTCTGACCCACTGAGCCTTCTATCCAGCTCCTTTATCGGCTTTTCCATCC  147

seq1  TAGCCTTCACGACTGGATGATGATGCTAATAC-AAAATTACATTATTCCA  197
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAGCCTTCACGACTGGATGATGATGCTAATACAAAAATTACATTATTCCA  197

seq1  ATCATGCAAATGAAAATGCCTTGCACTAACTGAAGAAGATTTCTAGATAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCAAATGAAAATGCCTTGCACTAACTGAAGAAGATTTCTAGATAC  247

seq1  TTTCAAAAGGAGCTATAATTGATTTCTCTATTGCAGTGTTTATTTCTAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAAGGAGCTATAATTGATTTCTCTATTGCAGTGTTTATTTCTAAT  297

seq1  AGTTTTCATTCACATGCTACTTGAAACAATAACCTGAGAGAAATTATTTC  347
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGTTTTCATTCACATGCTACTTGAAACAATAA-CTGAGAGAAATTATTTC  346

seq1  CAAACTCTGTGTGTGGATTGAAGAAAAATAACATGCTTTGGAACATAGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCTGTGTGTGGATTGAAGAAAAATAACATGCTTTGGAACATAGAA  396

seq1  ATTGGCTTTCAAGATAAGAATCATCCTTGAATTTGCATCTGCATGTCAGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTTTCAAGATAAGAATCATCCTTGAATTTGCATCTGCATGTCAGC  446

seq1  TTTCATTGTTGGAATACCAGTTCAGCACACTGGCCGGAGAGGAATGATAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGTTGGAATACCAGTTCAGCACACTGGCCGGAGAGGAATGATAG  496

seq1  ACATGTCTGCCTCTTAGCTACTATAATAAAACACATCTTAAGCCATAATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCTGCCTCTTAGCTACTATAATAAAACACATCTTAAGCCATAATA  546

seq1  TTACTGCTGCAACTTTTAAAGGCAAATTTACTACCATACAAGCAACCACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTGCAACTTTTAAAGGCAAATTTACTACCATACAAGCAACCACA  596

seq1  AGTTTTTATAAAGTATTGTAGTGTTACTATTTTTAAAATAGTGTATTCAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTATAAAGTATTGTAGTGTTACTATTTTTAAAATAGTGTATTCAG  646

seq1  ACTACTTTCTAACACATATAGTAGTGGTCATTTTTCCTTGTAGGTTTGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTTCTAACACATATAGTAGTGGTCATTTTTCCTTGTAGGTTTGGA  696

seq1  CAGTGTGGAGAGCCAGGGCACAACAGTTCCCAAATAGATTGCACTTCCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGGAGAGCCAGGGCACAACAGTTCCCAAATAGATTGCACTTCCTT  746

seq1  GTAACACATCTGTCTAACCCCTCACTTAACATGAAGTCTATGATTTGCTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACACATCTGTCTAACCCCTCACTTAACATGAAGTCTATGATTTGCTA  796

seq1  AAGAATGGGAAAGGTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGGGAAAGGTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTT  846

seq1  GTTTTGTTTTGTTTTGTTTTGTTTTCATCTGTCCTACAATATCTTTTGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTTGTTTTGTTTTCATCTGTCCTACAATATCTTTTGGA  896

seq1  GCACAGAAGTGAATGGACAAAAATTTTATAATTGTGTGTCCAAATTATAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAAGTGAATGGACAAAAATTTTATAATTGTGTGTCCAAATTATAT  946

seq1  AAAACATTCATTATGCATGTTGGATTTCCAAAGACAATGATATGATAATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTCATTATGCATGTTGGATTTCCAAAGACAATGATATGATAATT  996

seq1  TTATTCATTGGTTTCCCAACCTGTAAAAAGCTTCTCAATCAACTGTGTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCATTGGTTTCCCAACCTGTAAAAAGCTTCTCAATCAACTGTGTTA  1046

seq1  TGCTAGCTGTTGAGTAAAACCTAGAAATCACTTGACAAACAAGGAAATCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCTGTTGAGTAAAACCTAGAAATCACTTGACAAACAAGGAAATCA  1096

seq1  GAAGCACAGTTGAATTC  1114
      |||||||||||||||||
seq2  GAAGCACAGTTGAATTC  1113

seq1: chrX_154831356_154831566
seq2: B6Ng01-052J24.g_71_281

seq1  CAGTAGGTGATGAAAATTTTGACCAGCTGTGGCTTTATAATGGTCGCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGTGATGAAAATTTTGACCAGCTGTGGCTTTATAATGGTCGCTGT  50

seq1  ATGCATAAAGAGAAACTTCAAGGGATGAGACTCTTAATTGGTTACTCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATAAAGAGAAACTTCAAGGGATGAGACTCTTAATTGGTTACTCAAT  100

seq1  ACTAATGGTCAGCTCCGAAGTCACATATATGCAAACAACACTAAATACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGGTCAGCTCCGAAGTCACATATATGCAAACAACACTAAATACAT  150

seq1  TCAGCTGGTTGATGTTATATTTATATATTTATGTATGTGTATGTGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGGTTGATGTTATATTTATATATTTATGTATGTGTATGTGTGTGT  200

seq1  ATGTGTATGTG  211
      |||||||||||
seq2  ATGTGTATGTG  211