BAC Information

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BAC

Clone NameB6Ng01-052P08
ChromosomeX (Build37)
Map Location 81,926,823 - 82,023,653
singlet/doubletdoublet
Overlap geneDmd
Upstream geneLOC100042306
Downstream geneLOC100042296, LOC669833, 1600014K23Rik, Map3k7ip3, Gyk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052P08.bB6Ng01-052P08.g
ACCDH876156DH876157
length1,1911,168
definitionDH876156|Mus musculus domesticus DNA, BAC clone: B6Ng01-052P08, 5' end.DH876157|Mus musculus domesticus DNA, BAC clone: B6Ng01-052P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,926,823 - 81,928,029)(82,022,465 - 82,023,653)
sequence
gaattctatctttcacacgcaattgactcaaaagattaattttacctcct
aactgttaaaatagactttttctctatgacaatgacccattacagactgt
tattactgtggaattaagcctacataattaaaatctcacagttttgtcaa
gtttctttatgtattcatgatcccacttcctcatgtttttctgttttttt
taaggtaattgaaacaattgagtaagtttactacatattggcctcatttt
gcagaaaaccatcaataaatagtcattactatcattgcttgaaaatgctg
tgacttttaaatctagcaaaactggagataacatgaggctgtgtttgcta
gacctaagtgacagtttaatagtaacagttattgtctgacatcataacta
gttgataccttcatatccttgcttaaattcatggataaacattaaaatgc
cacttccttggagaagcatccagttttgtttctgacataatctttccatg
aacctatgtgttctgttgtacatgaatgatgcatgtagcataaaatccaa
agccacttattcactaccttatgtctccacacttgtacttgctttttctt
caccagtgattgatatgggagacaccacactgtggaaggtgctatccctg
ggcaggctgatcaagtcatgataagcaatccagtaatcagtactccttca
tggcctctgcatcagctcctgcctgtaggttcgtgctctatttgtattta
tggcctggctacgatgtggaactggaaactgaagtaaactctcttctccc
catgttgcttttggtcataatgttttgtaactgcagtagaacccttaact
aagacagccacaaaaattgtacttatttttatagcatttatacacccatc
tacttgagtttactatttaatattataacaatttcatcatcaaatataag
ttacttcttaaagagtattatgggtagttaatatagtaatgtaggtatga
aataatttgtgcttattaaacaaatagtattttactagtattcgaccact
gagtagccaaaaaccagtggttcaatatcagtttcctcagtccagtgatg
gagaatgagaatgaagaggctgttacagcgtgtcagataatggcttggac
tggaactgacgcattgccttctcttctacatgcctaggcct
gaattcatttttcactttgacttcctttataaagctagtgcatcctgggt
gcctctgtgtaatacagaggcacttaagtcgacagaaagaaacagtacag
atgcagaaataataaagaactacagaaataaagtgggagctgtggggctt
taaataaagacagagaattaaactcaaagagaagtaaaccttttttccct
cctagttgggccttgaactccaacttccaacataattaacattccaagag
taagagaaaggtcagagatgctcagtgtccaagttgcttttattccccct
caaaagtagatgactcttcttccttttgctctttttgttctccactatag
aaaaataaaacccccagttctaactgctaataccaagagatttattctta
ctgaagaatttggtcgtgttcctgtctcttaaactaatgtgcaaacttta
gcaaacgcgaaattcatacagtttttttttacatgtttttatccaccaag
catgaaaaatataaaatacaaattttctgaagtcttatcaataacatatt
gactaaccctcatactaaaacatatatccaatgttttatctgaatacaga
ttaaacaaatcttcataaatactgcttctgtcaaaaaaattctcttgacc
acttctgaaaattttagtagttttaaagtcaaagtgaagggttgtggata
tgggctattttagcatgaaaatacttgccttcattaatcatcctcctgtt
gaagtttcagttctcattctgtatatgtaagcatacatacacatttctag
atgtaagtaaagatattatttgatttccatctttactttgctatggaact
gagttattactgatgtttgcttactagtctatcttgttgtgatatgataa
cgtgtacggaagagatattcacttttcttgaatgaaacagtaagtttgta
ctgtataatttcaccactttttcctcaaaggcattctatttattttaata
gcatgttttaatataaatcagtgccatgcaatataaaaatcatttgctgg
gtagaggaacaaagttatcactgctgctgaacaagtttgggacctttgca
tccctagcatcccataggccagcattgtggttattctgtaattctgcagg
agcgagacaggtgggtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_81926823_81928029
seq2: B6Ng01-052P08.b_43_1233

seq1  GAATTCTATCTTTCACACGCAATTGACTCAAAAGATTAATTTTACCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCTTTCACACGCAATTGACTCAAAAGATTAATTTTACCTCCT  50

seq1  AACTGTTAAAATAGACTTTTTCTCTATGACAATGACCCATTACAGACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTAAAATAGACTTTTTCTCTATGACAATGACCCATTACAGACTGT  100

seq1  TATTACTGTGGAATTAAGCCTACATAATTAAAATCTCACAGTTTTGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTGTGGAATTAAGCCTACATAATTAAAATCTCACAGTTTTGTCAA  150

seq1  GTTTCTTTATGTATTCATGATCCCACTTCCTCATGTTTTTCTGTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTATGTATTCATGATCCCACTTCCTCATGTTTTTCTGTTTTTTT  200

seq1  TAAGGTAATTGAAACAATTGAGTAAGTTTACTACATATTGGCCTCATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAATTGAAACAATTGAGTAAGTTTACTACATATTGGCCTCATTTT  250

seq1  GCAGAAAACCATCAATAAATAGTCATTACTATCATTGCTTGAAAATGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAACCATCAATAAATAGTCATTACTATCATTGCTTGAAAATGCTG  300

seq1  TGACTTTTAAATCTAGCAAAACTGGAGATAACATGAGGCTGTGTTTGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTAAATCTAGCAAAACTGGAGATAACATGAGGCTGTGTTTGCTA  350

seq1  GACCTAAGTGACAGTTTAATAGTAACAGTTATTGTCTGACATCATAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAAGTGACAGTTTAATAGTAACAGTTATTGTCTGACATCATAACTA  400

seq1  GTTGATACCTTCATATCCTTGCTTAAATTCATGGATAAACATTAAAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATACCTTCATATCCTTGCTTAAATTCATGGATAAACATTAAAATGC  450

seq1  CACTTCCTTGGAGAAGCATCCAGTTTTGTTTCTGACATAATCTTTCCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTTGGAGAAGCATCCAGTTTTGTTTCTGACATAATCTTTCCATG  500

seq1  AACCTATGTGTTCTGTTGTACATGAATGATGCATGTAGCATAAAATCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATGTGTTCTGTTGTACATGAATGATGCATGTAGCATAAAATCCAA  550

seq1  AGCCACTTATTCACTACCTTATGTCTCCACACTTGTACTTGCTTTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTTATTCACTACCTTATGTCTCCACACTTGTACTTGCTTTTTCTT  600

seq1  CACCAGTGATTGATATGGGAGACACCACACTGTGGAAGGTGCTATCCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTGATTGATATGGGAGACACCACACTGTGGAAGGTGCTATCCCTG  650

seq1  GGCAGGCTGATCAAGTCATGATAAGCAATCCAGTAATCAGTACTCCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCTGATCAAGTCATGATAAGCAATCCAGTAATCAGTACTCCTTCA  700

seq1  TGGCCTCTGCATCAGCTCCTGCCTGTAGGTTCGTGCTCTATTTGTATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCTGCATCAGCTCCTGCCTGTAGGTTCGTGCTCTATTTGTATTTA  750

seq1  TGGCCTGGCTACGATGTGGAACTGGAAACTGAAGTAAACTCTCTTCTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGGCTACGATGTGGAACTGGAAACTGAAGTAAACTCTCTTCTCCC  800

seq1  CATGTTGCTTTTGGTCATAATGTTTTGTAACTGCAGTAGAACCCTTAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGCTTTTGGTCATAATGTTTTGTAACTGCAGTAGAACCCTTAACT  850

seq1  AAGACAGCCACAAAAATTGTACTTATTTTTATAGCATTTATACACCCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCCACAAAAATTGTACTTATTTTTATAGCATTTATACACCCATC  900

seq1  TACTTGAGTTTACTATTTAATATTATAACAATTTCATCATCAAATAATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TACTTGAGTTTACTATTTAATATTATAACAATTTCATCATCAAAT-ATAA  949

seq1  GTTACTTCTTAAAAGAGTAATTATGGGTAGTTAATATAGTAATGTAGGTA  1000
      |||||||||| ||||||| |||||||||||||||||||||||||||||||
seq2  GTTACTTCTT-AAAGAGT-ATTATGGGTAGTTAATATAGTAATGTAGGTA  997

seq1  TGAAAATAAATTTGTGCTTATTAAAACAAAATAAGGTATCTTACTTAGTA  1050
      |||||   |||||||||||||||||   |||||  |||| |||| |||| 
seq2  TGAAA--TAATTTGTGCTTATTAAA--CAAATA--GTATTTTAC-TAGT-  1039

seq1  ATTCAGACCACTGAAGTAGCCAAATACCAGTGTTTCAATATCAGTTTCCT  1100
      |||| |||||||| |||||||||| ||||||| |||||||||||||||||
seq2  ATTC-GACCACTG-AGTAGCCAAAAACCAGTGGTTCAATATCAGTTTCCT  1087

seq1  CAGTTCAAGTGAT-GAG-ATGAG-ATG-AGA-GCTGTACCCAAGCTGTGC  1145
      ||| || |||||| ||| ||||| ||| ||| |||||  |  ||| ||| 
seq2  CAG-TCCAGTGATGGAGAATGAGAATGAAGAGGCTGTTAC--AGC-GTGT  1133

seq1  AAGTACATGGCTTGAGCT-GAACTGACAGCATTTGCTTCTCTCTTCTACC  1194
       ||   ||||||||  || |||||||| |||||  ||  |||||||||| 
seq2  CAGATAATGGCTTGGACTGGAACTGAC-GCATTGCCT--TCTCTTCTAC-  1179

seq1  TATGCCTAGGCCT  1207
       ||||||||||||
seq2  -ATGCCTAGGCCT  1191

seq1: chrX_82022465_82023653
seq2: B6Ng01-052P08.g_66_1233 (reverse)

seq1  GGACCCACCTGTCTCTGCTTCCCTGGGCCAGGGATTACAGATATATACCA  50
      ||||||||||||||| |||  ||||   || | |||||||| ||| ||||
seq2  GGACCCACCTGTCTC-GCT--CCTG---CA-GAATTACAGA-ATA-ACCA  41

seq1  CAATGCCTGGCTTAATGTGGATGCTAGGGATGCAAAGGTTCCCAAACTTG  100
      ||||| ||||| | ||| |||||||||||||||||||| |||||||||||
seq2  CAATG-CTGGCCT-ATG-GGATGCTAGGGATGCAAAGG-TCCCAAACTTG  87

seq1  TTCAGCAAGCAGTTGATAACTTTGTTCCTCTACCCAGCAAATTGATTTTT  150
      |||||| ||||| |||||||||||||||||||||||||||| ||||||||
seq2  TTCAGC-AGCAG-TGATAACTTTGTTCCTCTACCCAGCAAA-TGATTTTT  134

seq1  ATATTTGCATGGCACTGATTTATATTTAAAACATGCTATTAAAATAAATA  200
      ||| |||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATA-TTGCATGGCACTGATTTATA-TTAAAACATGCTATTAAAATAAATA  182

seq1  GAATGCCTTTGAGGAAAAAGTGGTTGAAATTATACAGTACAAACTTACTG  250
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAATGCCTTTGAGGAAAAAGTGG-TGAAATTATACAGTACAAACTTACTG  231

seq1  TTTCATTCAAGAAAAGTGAATTATCTCTTCCGTACACGTTATCATATCAC  300
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTCATTCAAGAAAAGTGAA-TATCTCTTCCGTACACGTTATCATATCAC  280

seq1  AACAAGATAGACTAGTAAGCAAACATCAGTAATAACTCAGTTCCATAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGATAGACTAGTAAGCAAACATCAGTAATAACTCAGTTCCATAGCA  330

seq1  AAGTAAAGATGGAAATCAAATAATATCTTTACTTACATCTAGAAATGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAGATGGAAATCAAATAATATCTTTACTTACATCTAGAAATGTGT  380

seq1  ATGTATGCTTACATATACAGAATGAGAACTGAAACTTCAACAGGAGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGCTTACATATACAGAATGAGAACTGAAACTTCAACAGGAGGATG  430

seq1  ATTAATGAAGGCAAGTATTTTTCATGCTAAAATAGCCCATATCCACAACC  500
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATTAATGAAGGCAAGTA-TTTTCATGCTAAAATAGCCCATATCCACAACC  479

seq1  CTTCACTTTGACTTTAAAACTACTAAAATTTTCAGAAGTGGTCAAGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTTGACTTTAAAACTACTAAAATTTTCAGAAGTGGTCAAGAGAA  529

seq1  TTTTTTTGACAGAAGCAGTATTTATGAAGATTTGTTTAATCTGTATTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGACAGAAGCAGTATTTATGAAGATTTGTTTAATCTGTATTCAG  579

seq1  ATAAAACATTGGATATATGTTTTAGTATGAGGGTTAGTCAATATGTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACATTGGATATATGTTTTAGTATGAGGGTTAGTCAATATGTTATT  629

seq1  GATAAGACTTCAGAAAATTTGTATTTTATATTTTTCATGCTTGGTGGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGACTTCAGAAAATTTGTATTTTATATTTTTCATGCTTGGTGGATA  679

seq1  AAAACATGTAAAAAAAAACTGTATGAATTTCGCGTTTGCTAAAGTTTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGTAAAAAAAAACTGTATGAATTTCGCGTTTGCTAAAGTTTGCA  729

seq1  CATTAGTTTAAGAGACAGGAACACGACCAAATTCTTCAGTAAGAATAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTTTAAGAGACAGGAACACGACCAAATTCTTCAGTAAGAATAAAT  779

seq1  CTCTTGGTATTAGCAGTTAGAACTGGGGGTTTTATTTTTCTATAGTGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGTATTAGCAGTTAGAACTGGGGGTTTTATTTTTCTATAGTGGAG  829

seq1  AACAAAAAGAGCAAAAGGAAGAAGAGTCATCTACTTTTGAGGGGGAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAGAGCAAAAGGAAGAAGAGTCATCTACTTTTGAGGGGGAATAA  879

seq1  AAGCAACTTGGACACTGAGCATCTCTGACCTTTCTCTTACTCTTGGAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTTGGACACTGAGCATCTCTGACCTTTCTCTTACTCTTGGAATG  929

seq1  TTAATTATGTTGGAAGTTGGAGTTCAAGGCCCAACTAGGAGGGAAAAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATGTTGGAAGTTGGAGTTCAAGGCCCAACTAGGAGGGAAAAAAG  979

seq1  GTTTACTTCTCTTTGAGTTTAATTCTCTGTCTTTATTTAAAGCCCCACAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTTCTCTTTGAGTTTAATTCTCTGTCTTTATTTAAAGCCCCACAG  1029

seq1  CTCCCACTTTATTTCTGTAGTTCTTTATTATTTCTGCATCTGTACTGTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACTTTATTTCTGTAGTTCTTTATTATTTCTGCATCTGTACTGTTT  1079

seq1  CTTTCTGTCGACTTAAGTGCCTCTGTATTACACAGAGGCACCCAGGATGC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTCGACTTAAGTGCCTCTGTATTACACAGAGGCACCCAGGATGC  1129

seq1  ACTAGCTTTATAAAGGAAGTCAAAGTGAAAAATGAATTC  1189
      |||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTTTATAAAGGAAGTCAAAGTGAAAAATGAATTC  1168