BAC Information

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BAC

Clone NameB6Ng01-054E03
Chromosome8 (Build37)X (Build37)
Map Location 59,124,716 - 59,125,673120,383,287 - 120,383,356
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431
Downstream geneEG624433, LOC654355, LOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054E03.bB6Ng01-054E03.g
ACCDH877052DH877053
length1,170944
definitionDH877052|Mus musculus domesticus DNA, BAC clone: B6Ng01-054E03, 5' end.DH877053|Mus musculus domesticus DNA, BAC clone: B6Ng01-054E03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(59,124,716 - 59,125,673)(120,383,287 - 120,383,356)
sequence
gaattccatagcttctcaatatgatgaatctgtctctgaattaaacattt
ttttcccttaggctgatttttatcagagtgtttttcacagaaaaagaaaa
gtaaccactacagacacaacagaagtgtccacaaaacagaaacagaagga
acactacctaactcatgctatgaagccacaattacctgatacctaagcta
cacaaggaccaaaaaagagaacttcagaccaatctcgcttatgaatatcg
atgaaaaaatactcaataaaattcttgcaaactgaatccaagaacacatt
aaaaccatcattcatcacaaccaagtaggtttcatttcagggatgtaagg
ttgatttaatatatgaaaatccattaacataatacactatatgaacaaac
tcaaagaaaaaaaaatcacatgatcatctcctcaaatgcagaaaaagcat
ttgacaaaatccaacaccccttcatgttaaaagtattggagagatcagga
tttcaaggtccatacccaaacataataaaagcaatttactgcaaaccagt
agccaacatcaaagtacatggagacatacttgaagcaatcccattgaaat
ctgaaacaggacaaggatgcccaatctccccatacctattcaatatagta
ctcaaagtgttagctagaacaataaggtaacaaaaagagatcaaggggat
acaaattggtaaagaagaaataaaggtatcactagaaaaatccttgctag
aaaaaagtttatgacaattatatgcttgtgtgatcttattatagaggtag
aaaataatatcactaccaatactaaaagcagcagaggtgcaggggaaaac
agagcacataatgtagtagagtttttgctaagagcacagggctgggttga
ggagtagcttggttggtgcagagtttgtcttctacacatacagccctggg
tttaatccacagcactgcatgaactagtgtggtagtgtacacatggaaca
cagcactctggagtagagaaggagatcgaggcattgggaataacatggga
gctagagccttgagaagaaggagtaatataagttctggaatggatcctgg
cctgctagtcagacatgcttgcttatgtcatctgtgacttcacaattagt
aagtcagcccctcatgtaaa
gaattcatgactggtactgggagcctagccaactacccatggctagtgag
gtccatgggtattagaggagaagctactgctgccactttcctaaatcaat
atgattcccgcttgcattctaaatacgaatccttgtatctaccgataagt
ggagctcttagccctcatcatgtgtttgtatcaaatggagaacatcacat
aaagccacagctgtacaacatgcagagatcaactatgtctatagagctct
gccccagttgattcatctacaatacagcttctacatttgaggctcagaga
acactgtagaagagggaacagaaaaattataagaggcaaggaaccaggat
atctgctatgagattgggtcttctgtgtattacacagtaggtgaatacat
gatttcatgtattaacctcaacaatatggtggtttaaacaagacttgaaa
aatgacaccagatgacatcttgatatacatgaacgaaatcttatggggca
ccaagatgagcaggtaatttggtgactgttcaaagagggagaagtagttt
tcttcatgggcgagctctcagctggttatccaataccaaatggtcagccc
taaaaacacatatacagcaacactaaatggactcagcagactgtttctat
gttcttttattcacatatatactatgttcaaacacatacactaatatgca
acaaaatattgttttaaatgagttaagggttttagagggaatcacaggca
tgacgaggcttgggagaaaaagaggaagagaagacatgctgtcaatgtgg
cacacatatgtaaatttttgtatttatttaattttaatatacaggaacaa
aattgtaaaggattttatatactaaatggactcgagggggtgtttgtgct
ttcgttttgtttttttttttgttttttttttgtttttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_59124716_59125673
seq2: B6Ng01-054E03.b_282_1216

seq1  CGCTTATGAATATCGATGAAAAAATACTCAATAAAATTCTTGCAAACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTATGAATATCGATGAAAAAATACTCAATAAAATTCTTGCAAACTGA  50

seq1  ATCCAAGAACACATTAAAACCATCATTCATCACAACCAAGTAGGTTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGAACACATTAAAACCATCATTCATCACAACCAAGTAGGTTTCAT  100

seq1  TTCAGGGATGTAAGGTTGATTTAATATATGAAAATCCATTAACATAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGATGTAAGGTTGATTTAATATATGAAAATCCATTAACATAATAC  150

seq1  ACTATATGAACAAACTCAAAGAAAAAAAAATCACATGATCATCTCCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATGAACAAACTCAAAGAAAAAAAAATCACATGATCATCTCCTCAA  200

seq1  ATGCAGAAAAAGCATTTGACAAAATCCAACACCCCTTCATGTTAAAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAAAAAGCATTTGACAAAATCCAACACCCCTTCATGTTAAAAGTA  250

seq1  TTGGAGAGATCAGGATTTCAAGGTCCATACCCAAACATAATAAAAGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAGATCAGGATTTCAAGGTCCATACCCAAACATAATAAAAGCAAT  300

seq1  TTACTGCAAACCAGTAGCCAACATCAAAGTACATGGAGACATACTTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCAAACCAGTAGCCAACATCAAAGTACATGGAGACATACTTGAAG  350

seq1  CAATCCCATTGAAATCTGAAACAGGACAAGGATGCCCAATCTCCCCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCATTGAAATCTGAAACAGGACAAGGATGCCCAATCTCCCCATAC  400

seq1  CTATTCAATATAGTACTCAAAGTGTTAGCTAGAACAATAAGGTAACAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAATATAGTACTCAAAGTGTTAGCTAGAACAATAAGGTAACAAAA  450

seq1  AGAGATCAAGGGGATACAAATTGGTAAAGAAGAAATAAAGGTATCACTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCAAGGGGATACAAATTGGTAAAGAAGAAATAAAGGTATCACTAG  500

seq1  AAAAATCCTTGCTAGAAAAAAGTTTATGACAATTATATGCTTGTGTGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCTTGCTAGAAAAAAGTTTATGACAATTATATGCTTGTGTGATC  550

seq1  TTATTATAGAGGTAGAAAATAATATCACTACCAATACTAAAAGCAGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATAGAGGTAGAAAATAATATCACTACCAATACTAAAAGCAGCAGA  600

seq1  GGTGCAGGGGAAAACAGAGCACATAATGTAGTAGAGTTTTTGCTAAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGGGGAAAACAGAGCACATAATGTAGTAGAGTTTTTGCTAAGAGC  650

seq1  ACAGGGCTGGGTTGAGGAGTAGCTTGGTTGGTGCAGAGTTTGTCTTCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCTGGGTTGAGGAGTAGCTTGGTTGGTGCAGAGTTTGTCTTCTAC  700

seq1  ACATACAGCCCTGGGTTTAATCCACAGCACTGCATGAACTAGGTGTGGTA  750
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACATACAGCCCTGGGTTTAATCCACAGCACTGCATGAACTA-GTGTGGTA  749

seq1  GTGTACACATGGAACACGGGCACTCTGGAAGTAGAGAAAAGAAGATCAAA  800
      |||||||||||||||||  ||||||||| |||||||  ||| ||||| | 
seq2  GTGTACACATGGAACAC-AGCACTCTGG-AGTAGAG--AAGGAGATCGA-  794

seq1  AGGCCATTGGGAATTACATGGGAAGCTAGAGCCTTGAAGAGGAAGGAGTA  850
        | |||||||||| ||||||| ||||||||||||| ||| |||||||||
seq2  --GGCATTGGGAATAACATGGG-AGCTAGAGCCTTG-AGAAGAAGGAGTA  840

seq1  ATATAAGTTCTGGAATTGGATCCTGGCCTGCTAGGTCAGACATTGGCTTG  900
      ||||||||||||||| ||||||||||||||||| |||||||||  |||||
seq2  ATATAAGTTCTGGAA-TGGATCCTGGCCTGCTA-GTCAGACAT--GCTTG  886

seq1  CTTATGGTCATCTGTGAACTTCACATATTAGTAAGTTCAGGCCCCCCCTC  950
      ||||| |||||||||| |||||||| ||||||||| ||||    ||||| 
seq2  CTTAT-GTCATCTGTG-ACTTCACA-ATTAGTAAG-TCAG----CCCCT-  927

seq1  CATGTAAA  958
      ||||||||
seq2  CATGTAAA  935

seq1: chrX_120383287_120383356
seq2: B6Ng01-054E03.g_788_1009 (reverse)

seq1  AAAAAAAAAAAACAAAAACAATCAAACAAAAAAAAAAACAAAAACAAA-A  49
      |||||||||||||||||| |   ||||||||||||||||||||  |||  
seq2  AAAAAAAAAAAACAAAAAAA---AAACAAAAAAAAAAACAAAACGAAAGC  47

seq1  ACAAA-AC--------------------TCTAAAACCCTTAA--------  70
      ||||| ||                    | ||||| |||| |        
seq2  ACAAACACCCCCTCGAGTCCATTTAGTATATAAAATCCTTTACAATTTTG  97

seq1  --------------------------------------------------  70
                                                        
seq2  TTCCTGTATATTAAAATTAAATAAATACAAAAATTTACATATGTGTGCCA  147

seq1  --------------------------------------------------  70
                                                        
seq2  CATTGACAGCATGTCTTCTCTTCCTCTTTTTCTCCCAAGCCTCGTCATGC  197

seq1  -------------------------  70
                               
seq2  CTGTGATTCCCTCTAAAACCCTTAA  222