BAC Information

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BAC

Clone NameB6Ng01-054F18
ChromosomeX (Build37)
Map Location 71,647,486 - 71,822,176
singlet/doubletdoublet
Overlap geneG6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1
Upstream geneZfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik
Downstream geneOlfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437, EG667446, LOC669291, Gab3, Dkc1, Mpp1, EG547412, 4930428E23Rik, EG667190, F8, LOC572559, LOC667218, Fundc2, Mtcp1, Brcc3, LOC667496, Vbp1, Rab39b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054F18.bB6Ng01-054F18.g
ACCDH877123DH877124
length1,0581,053
definitionDH877123|Mus musculus domesticus DNA, BAC clone: B6Ng01-054F18, 5' end.DH877124|Mus musculus domesticus DNA, BAC clone: B6Ng01-054F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,647,486 - 71,648,556)(71,821,108 - 71,822,176)
sequence
gaattcaggccatcagacttggcagtaggcatctttatcagctggctcct
ctcattggctctgtttttttgcttttgtaacgggttttcattatagccct
ggctggcctagaactctctatgtagagtaggcattaattccaaacttgca
ttaattctattgcttttggcctccagagcgataagactagagattaacat
catcatgcctggtattctttttgttttagaaactatgttttctagataag
cctgatgcaggcctataactccagctacataggtggctgaggtgggagaa
tcacaagttcagtgccagcctggacaatttagtgagaccatgtatcaaaa
taaagtttagaaggagcctgggtggtacctgcctttattttcagcacttg
agaggcaaaggctgggtggatctctgagttccaggatacccagagctata
tagtgcctgtcttaaaaacacaaaacaaaacaaaaatgtaaaaagggctt
aggatgttatataatcaatagacagtacaacaaacaacaaaaaccaaaac
aattatctttctatttttaatgatattttccctcttatttaaattttttt
gagggtgacaaggtctcactatgtctttattggcctggagcttgctatat
agaccagactggccttgaactcagagatctgtgtacctttgcttccagag
tgggggaattaaaggcatgtgctacaaagcccagctctctttctctctga
tgtgtgtgtgtgtgttggtttttcgagacagggtttctctgtacagcccc
tgctgtcctggaactcactttgtagatcaggctggccttgaactcagaaa
tccgcttgcctctgcttcccaagtgctgggattaaggcgtgcgccaccac
tgcccggcttctctctgatttttttaaccagagggtacctgcctctcatt
ttttcagtgtcagagatctgatctagtcaaggcatgctagttaattttag
gtaagtttgagctatcctagttttattcttctgattttgtatgtatttat
ataatatc
gaattctttcctgccatagattgccctgggatgaaaataacgtttgaaat
gaatgtaatttgaaggcttaagtgcaatgacattataaaagggagctaat
tatgtctgttaatcttattaggtagatttaaaagagattgaagtcctaat
tccaatctcttttcaacctcatgtggaagctctggatggtttgtggggcc
agagctctaaaatttaagccactatccatgttcactcagtgactcctggt
gaagattttactctttttcattgtttatttataacaaacattcttcataa
taacctccaatcagaaattctttgagactatgttttcagtctttatcagt
catacaacagaaccatatgatgcattcatcctgtgaatgggccactgata
gcatcatttctaaactggctatttaacctgtctgtaaccttgttaatttt
aaggcacattcatctggactgatgcatggtttttggtgccaatgatgtgg
ttgtgtgtggaactttttttttatttgtttgtttgttttgttttgttttg
ttttgtttttcgagacaggatttctctgtatagccctggctgtcctggaa
ctcactttgtagaccaggctggcctcgaactcagaaatccacctgcctct
gcctcccaagtgctgagattaaaggcgtgcgccaccaccgcccagctttg
tgtggaacttttttatggcacatatggtctacaaggtcacttgcatcatt
ctgcatgtccaagccatgtctccttcatataatctagtgtaagggcagaa
acgtcatgatgagctttatttttctaactctctgaaatttactttcatgt
ttaaaaacatctagcaatttgcaaaggcaacaacctcagtatcttttctc
atttgagtgcctactttcaaagtgttaagtttatacataagcccaagttt
ataagggtgttagtccatgtttcttgtttatgatgtatacaggactactc
cctgatagtgtaagatgcacatgtagtcccctaatcccaagatgttaggc
aac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_71647486_71648556
seq2: B6Ng01-054F18.b_43_1099

seq1  GAATTCAGGCCATCAGACTTGGCAGTAGGCATCTTTATCAGCTGGCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCCATCAGACTTGGCAGTAGGCATCTTTATCAGCTGGCTCCT  50

seq1  CTCATTGGCTCTGTTTTTTTGCTTTTGTAACGGGTTTTCATTATAGCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGGCTCTGTTTTTTTGCTTTTGTAACGGGTTTTCATTATAGCCCT  100

seq1  GGCTGGCCTAGAACTCTCTATGTAGAGTAGGCATTAATTCCAAACTTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCTAGAACTCTCTATGTAGAGTAGGCATTAATTCCAAACTTGCA  150

seq1  TTAATTCTATTGCTTTTGGCCTCCAGAGCGATAAGACTAGAGATTAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCTATTGCTTTTGGCCTCCAGAGCGATAAGACTAGAGATTAACAT  200

seq1  CATCATGCCTGGTATTCTTTTTGTTTTAGAAACTATGTTTTCTAGATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGCCTGGTATTCTTTTTGTTTTAGAAACTATGTTTTCTAGATAAG  250

seq1  CCTGATGCAGGCCTATAACTCCAGCTACATAGGTGGCTGAGGTGGGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGCAGGCCTATAACTCCAGCTACATAGGTGGCTGAGGTGGGAGAA  300

seq1  TCACAAGTTCAGTGCCAGCCTGGACAATTTAGTGAGACCATGTATCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGTTCAGTGCCAGCCTGGACAATTTAGTGAGACCATGTATCAAAA  350

seq1  TAAAGTTTAGAAGGAGCCTGGGTGGTACCTGCCTTTATTTTCAGCACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTAGAAGGAGCCTGGGTGGTACCTGCCTTTATTTTCAGCACTTG  400

seq1  AGAGGCAAAGGCTGGGTGGATCTCTGAGTTCCAGGATACCCAGAGCTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAAAGGCTGGGTGGATCTCTGAGTTCCAGGATACCCAGAGCTATA  450

seq1  TAGTGCCTGTCTTAAAAACACAAAACAAAACAAAAATGTAAAAAGGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCTGTCTTAAAAACACAAAACAAAACAAAAATGTAAAAAGGGCTT  500

seq1  AGGATGTTATATAATCAATAGACAGTACAACAAACAACAAAAACCAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTTATATAATCAATAGACAGTACAACAAACAACAAAAACCAAAAC  550

seq1  AATTATCTTTCTATTTTTAATGATATTTTCCCTCTTATTTAAATTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCTTTCTATTTTTAATGATATTTTCCCTCTTATTTAAATTTTTTT  600

seq1  GAGGGTGACAAGGTCTCACTATGTCTTTATTGGCCTGGAGCTTGCTATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGACAAGGTCTCACTATGTCTTTATTGGCCTGGAGCTTGCTATAT  650

seq1  AGACCAGACTGGCCTTGAACTCAGAGATCTGTGTACCTTTGCTTCCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGACTGGCCTTGAACTCAGAGATCTGTGTACCTTTGCTTCCAGAG  700

seq1  TGGGGGAATTAAAGGCATGTGCTACAAAGCCCAGCTCTCTTTCTCTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAATTAAAGGCATGTGCTACAAAGCCCAGCTCTCTTTCTCTCTGA  750

seq1  TGTGTGTGTGTGTGTTGGTTTTTCGAGACAGGGTTTCTCTGTACAGCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTTGGTTTTTCGAGACAGGGTTTCTCTGTACAGCCCC  800

seq1  TGCTGTCCTGGAACTCACTTTGTAGATCAGGCTGGCCTTGAACTCAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCCTGGAACTCACTTTGTAGATCAGGCTGGCCTTGAACTCAGAAA  850

seq1  TCCGCTTGCCTCTGCTTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCA  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCGCTTGCCTCTGCTTCCCAAGTGCTGGGATT-AAGGCGTGCGCCACCA  899

seq1  CTGCCCGGCTTCTCTCTGATTTTTTTAACCAGAGGGTTACCTGCCTCTCC  950
      |||||||||||||||||||||||||||||||||||| ||||||||||| |
seq2  CTGCCCGGCTTCTCTCTGATTTTTTTAACCAGAGGG-TACCTGCCTCT-C  947

seq1  ATTTTTTCAGTGTCAGAGATCTGATCTAGGTCAAGGGCATGCTAGGTAAA  1000
      |||||||||||||||||||||||||||| ||||| ||||||||| || ||
seq2  ATTTTTTCAGTGTCAGAGATCTGATCTA-GTCAA-GGCATGCTA-GTTAA  994

seq1  TTCTAGGTAAGTTTTGAGCTATCCTTAGTTTTTATTCTTTTTGAATTTTA  1050
      || |||||||| |||||||||||| ||| |||||||| || |||   || 
seq2  TTTTAGGTAAG-TTTGAGCTATCC-TAG-TTTTATTC-TTCTGA---TTT  1037

seq1  TGTATGTATTTATATATATAT  1071
      |||||||||||||||| ||||
seq2  TGTATGTATTTATATA-ATAT  1057

seq1: chrX_71821108_71822176
seq2: B6Ng01-054F18.g_67_1119 (reverse)

seq1  GTTGCCTAACATCTTGGGATTAGGGGGACTACAGTGTTGGATTCTTTACA  50
      |||||||||||||||||||||| |||||||||| || || ||   |||||
seq2  GTTGCCTAACATCTTGGGATTA-GGGGACTACA-TG-TGCAT--CTTACA  45

seq1  ACATCAGGGAGTAGTCCCCTGTATACATCATTAAACAAGAAACATGGAAC  100
        |||||||||||||  ||||||||||||| |||||||||||||||||  
seq2  CTATCAGGGAGTAGT--CCTGTATACATCA-TAAACAAGAAACATGGA--  90

seq1  CTAAACACCCCTTATAAACTTGGGCTTTATGTATAAACTTAACACTTTGA  150
      || |||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  CT-AACA-CCCTTATAAACTTGGGC-TTATGTATAAACTTAACACTTTGA  137

seq1  AAGTAAGGCACCTCAAATGAGAAAAGATACTGAGGTTGTTGCCTTTGCAA  200
      |||| ||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAGT-AGGCA-CTCAAATGAGAAAAGATACTGAGGTTGTTGCCTTTGCAA  185

seq1  ATTGCTAGATGTTTTTAAACAATGAAAGTAAATTTCAGAGAGTTAG-AAA  249
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  ATTGCTAGATGTTTTTAAAC-ATGAAAGTAAATTTCAGAGAGTTAGAAAA  234

seq1  ATAAAGCTCATCATGACGTTTCTGCCCTTACACTAGATTTATATGAAGGA  299
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATAAAGCTCATCATGACGTTTCTGCCCTTACACTAGA-TTATATGAAGGA  283

seq1  GACATGGCTTGGACATGCAGAATGATGCAAGTGACCTTGTAGACCATATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGCTTGGACATGCAGAATGATGCAAGTGACCTTGTAGACCATATG  333

seq1  TGCCATAAAAAAGTTCCACACAAAGCTGGGCGGTGGTGGCGCACGCCTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATAAAAAAGTTCCACACAAAGCTGGGCGGTGGTGGCGCACGCCTTT  383

seq1  AATCTCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCC  433

seq1  AGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAA  483

seq1  TCCTGTCTCGAAAAACAAAACAAAACAAAACAAAACAAACAAACAAATAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTCGAAAAACAAAACAAAACAAAACAAAACAAACAAACAAATAA  533

seq1  AAAAAAAGTTCCACACACAACCACATCATTGGCACCAAAAACCATGCATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTTCCACACACAACCACATCATTGGCACCAAAAACCATGCATC  583

seq1  AGTCCAGATGAATGTGCCTTAAAATTAACAAGGTTACAGACAGGTTAAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGATGAATGTGCCTTAAAATTAACAAGGTTACAGACAGGTTAAAT  633

seq1  AGCCAGTTTAGAAATGATGCTATCAGTGGCCCATTCACAGGATGAATGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTTTAGAAATGATGCTATCAGTGGCCCATTCACAGGATGAATGCA  683

seq1  TCATATGGTTCTGTTGTATGACTGATAAAGACTGAAAACATAGTCTCAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGGTTCTGTTGTATGACTGATAAAGACTGAAAACATAGTCTCAAA  733

seq1  GAATTTCTGATTGGAGGTTATTATGAAGAATGTTTGTTATAAATAAACAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCTGATTGGAGGTTATTATGAAGAATGTTTGTTATAAATAAACAA  783

seq1  TGAAAAAGAGTAAAATCTTCACCAGGAGTCACTGAGTGAACATGGATAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAGAGTAAAATCTTCACCAGGAGTCACTGAGTGAACATGGATAGT  833

seq1  GGCTTAAATTTTAGAGCTCTGGCCCCACAAACCATCCAGAGCTTCCACAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAAATTTTAGAGCTCTGGCCCCACAAACCATCCAGAGCTTCCACAT  883

seq1  GAGGTTGAAAAGAGATTGGAATTAGGACTTCAATCTCTTTTAAATCTACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGAAAAGAGATTGGAATTAGGACTTCAATCTCTTTTAAATCTACC  933

seq1  TAATAAGATTAACAGACATAATTAGCTCCCTTTTATAATGTCATTGCACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGATTAACAGACATAATTAGCTCCCTTTTATAATGTCATTGCACT  983

seq1  TAAGCCTTCAAATTACATTCATTTCAAACGTTATTTTCATCCCAGGGCAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTTCAAATTACATTCATTTCAAACGTTATTTTCATCCCAGGGCAA  1033

seq1  TCTATGGCAGGAAAGAATTC  1069
      ||||||||||||||||||||
seq2  TCTATGGCAGGAAAGAATTC  1053