BAC Information

Click to search

BAC

Clone NameB6Ng01-054L20
ChromosomeX (Build37)
Map Location 134,472,059 - 134,528,800
singlet/doubletdoublet
Overlap geneIl1rapl2
Upstream geneLOC100034363, 4930488E11Rik, LOC666244, 2810402A17Rik, Zcchc18, BC031748, LOC666277, LOC436231, LOC666288, LOC100041260, LOC100041272, LOC669737, Esx1, EG666303
Downstream gene1700025D03Rik, Nrk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054L20.bB6Ng01-054L20.g
ACCDH877403DH877404
length1,2471,152
definitionDH877403|Mus musculus domesticus DNA, BAC clone: B6Ng01-054L20, 5' end.DH877404|Mus musculus domesticus DNA, BAC clone: B6Ng01-054L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,527,526 - 134,528,800)(134,472,059 - 134,473,212)
sequence
gaattcacagagcagcttttacaaaatttaaactattgaattcctcccaa
cttcaaaagggtttctaagactttactcccagatcaaggagaaatttcaa
attatgtaaggcacaacttgcagatcacaaaaggcattatttaagtggag
tttgtgtctatcattcagaaaagcaaaattgtgaaatggatgggctttca
aggcaccttacatacggctgctcttcttttcattctccttctttgtcagg
cttatctttactttacactcaaacttgtgctgtgatcattccctgtctcc
ctgtaaacttgatgttttattccttgaatatctctgcttttgtcctgcat
gctttttgcgtatagcacttcagacatagaaggcctctttagctcctatt
attttttattggtggatgacagacagaatccttaggactctattgaagga
tctttaatgctttgcatttctattctctgctgtttcctgcttgcactcat
tcaatttcacacagctcttgctgcaatcttcctaaattcgttctgcagaa
atgcatcacttttatttttacctcttttgctttcactttgttcccaatta
ccaatgtaactggcttctgacttctgctcacttcaggaatacccttacct
ttcacatcatcgtttactcttttgatatgcaaacttgactctctgaattg
cttttgctttctctcccacgtttactacttgctatgtaataagaaagtcc
ttaccatgcccttgtcacctccattactggatgcatctatctattaagtc
cccacagttagaacaatagtcagttgacacctgaaagtgttcacaatata
ctgcagacaagttcaaaactttcaaatattaaaacaaaaaaattaggtaa
aatggtacccaatatacccattcagtttattcttctaagaatcacttata
aaatacctttgttttggcttgtcttttatgagtactgatttaatttctat
tatctgttgatttgggtgttattattttattttctcttgtcagaaatgtt
tgtgtagtacttcaaaagaagataagtggtcgtatcataatgatgaagca
tgattttcctaagaccatcttctcaccctgaatgtaatttttttaggtga
ataaatgaaagatctcagtctttcacctttttattttaaccacagcaagt
tctactaacgactatttgcaggttagtgaaatcagagggtgttctaa
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggaatctaccttcttgagttctttataatattggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggcctt
tttgtcttattgacagtgtcttttgccttacagaagctttgcaattttat
gaggtcccatttgtcaattctcaatcttacagcacaagccatttctgttc
tattcaggaattttcctgtgtgattcttaattgttggttttactatgctc
ccaaatcaaaaataagtaacaaggacaaatactttttatattctttctgc
cactattcacaaaactagttattctaactatatagaaatcattgtaatat
atagactttggatctggttaattttggtgtgagattttttttgttttatt
tgcaagtttttttataatatttaattcaaaaaaatttaaaaatgattttt
aaatcagcacatgctacttgaaaatctacttgatgatatgtgacaaaata
tagtcatacacaaaacagacatggcttctgtcttcagaacttctagtatg
acaggtcagatattagaaaaaaaatgattacaggcttggtgagtgctatt
gttcccagctaatatgtgagaggtcattggagctacccagatgctgatta
tgggtacccaaggagaagctcttcaaggccatgtttgggactgctttggc
ttcactttgatgtttagcaagagcaaatagtgacattaaaatgatgaaac
aatagttgttatgttgtgatactcatggggcctcagacgatgggccagtg
aacactccagatgttaaaagacttagatagactttaggaagtctgccttc
ttcagtcattgactgcaggtagaattgaagcttctagttcgaccaaggta
tcaggaatcctcagtcttagacaacagaaagaattgaagcttttgggtct
ggactcactgagcccttttcatatagaatatttaacatctctggtcattc
ttccattgacagtggtcggcattcccttctctggctctttacttttagcg
tctctcagcattagcaattccctgcttttctatatgtctgcatcccctct
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_134527526_134528800
seq2: B6Ng01-054L20.b_48_1294 (reverse)

seq1  TTAGACACACCCTCTCTGATCTTACCTATACACTGCCAATTTAGTCGGTT  50
      ||||| |||||  ||||||| | ||   ||  |||| ||  ||||||   
seq2  TTAGA-ACACC--CTCTGATTTCAC---TAACCTGCAAA--TAGTCG---  39

seq1  TTAGTAGACACTTTGCTGTGGTTAAATATAAACAGTTGTAAAGGAACTGA  100
      |||||||| || |||||||||||||| ||||| || || ||||  |||||
seq2  TTAGTAGA-AC-TTGCTGTGGTTAAA-ATAAAAAGGTG-AAAG--ACTGA  83

seq1  GATCTTTCATTTTATTCA-CTAAAAAAAATACATATCAGGATGAGAAAGA  149
      ||||||||| |||||||| ||||||||| ||||| ||||| |||| ||||
seq2  GATCTTTCA-TTTATTCACCTAAAAAAATTACAT-TCAGGGTGAG-AAGA  130

seq1  TGGTCTTTGGGGAATATCATGCTTCATCATTATGATACGACCACCTTATC  199
      |||||||   |||| |||||||||||||||||||||||||||| ||||||
seq2  TGGTCTT--AGGAAAATCATGCTTCATCATTATGATACGACCA-CTTATC  177

seq1  TCTATTTGAAGGTTACTACACAAACATTTCTGACCAAGAGAAAATAAAAT  249
      |   |||||||  |||||||||||||||||||| ||||||||||||||| 
seq2  TTCTTTTGAAG--TACTACACAAACATTTCTGA-CAAGAGAAAATAAAA-  223

seq1  TAATAACACCCAAATCAAACAGATAATAGAAATTAAATCAGTACTTCATA  299
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  TAATAACACCCAAATC-AACAGATAATAGAAATTAAATCAGTAC-TCATA  271

seq1  AAAGACAAGCCAAAACAAAGGTATTTTATAAGTGATTCTTAGAAGAATAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAGCCAAAACAAAGGTATTTTATAAGTGATTCTTAGAAGAATAA  321

seq1  ACTGAATGGGTATATTGGGTACCATTTTACCTAATTTTTTTGTTTTAATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATGGGTATATTGGGTACCATTTTACCTAATTTTTTTGTTTTAATA  371

seq1  TTTGAAAGTTTTGAACTTGTCTGCAGTATATTGTGAACACTTTCAGGTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGTTTTGAACTTGTCTGCAGTATATTGTGAACACTTTCAGGTGT  421

seq1  CAACTGACTATTGTTCTAACTGTGGGGACTTAATAGATAGATGCATCCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGACTATTGTTCTAACTGTGGGGACTTAATAGATAGATGCATCCAG  471

seq1  TAATGGAGGTGACAAGGGCATGGTAAGGACTTTCTTATTACATAGCAAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAGGTGACAAGGGCATGGTAAGGACTTTCTTATTACATAGCAAGT  521

seq1  AGTAAACGTGGGAGAGAAAGCAAAAGCAATTCAGAGAGTCAAGTTTGCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACGTGGGAGAGAAAGCAAAAGCAATTCAGAGAGTCAAGTTTGCAT  571

seq1  ATCAAAAGAGTAAACGATGATGTGAAAGGTAAGGGTATTCCTGAAGTGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAGAGTAAACGATGATGTGAAAGGTAAGGGTATTCCTGAAGTGAG  621

seq1  CAGAAGTCAGAAGCCAGTTACATTGGTAATTGGGAACAAAGTGAAAGCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTCAGAAGCCAGTTACATTGGTAATTGGGAACAAAGTGAAAGCAA  671

seq1  AAGAGGTAAAAATAAAAGTGATGCATTTCTGCAGAACGAATTTAGGAAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTAAAAATAAAAGTGATGCATTTCTGCAGAACGAATTTAGGAAGA  721

seq1  TTGCAGCAAGAGCTGTGTGAAATTGAATGAGTGCAAGCAGGAAACAGCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCAAGAGCTGTGTGAAATTGAATGAGTGCAAGCAGGAAACAGCAG  771

seq1  AGAATAGAAATGCAAAGCATTAAAGATCCTTCAATAGAGTCCTAAGGATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGAAATGCAAAGCATTAAAGATCCTTCAATAGAGTCCTAAGGATT  821

seq1  CTGTCTGTCATCCACCAATAAAAAATAATAGGAGCTAAAGAGGCCTTCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTCATCCACCAATAAAAAATAATAGGAGCTAAAGAGGCCTTCTA  871

seq1  TGTCTGAAGTGCTATACGCAAAAAGCATGCAGGACAAAAGCAGAGATATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAAGTGCTATACGCAAAAAGCATGCAGGACAAAAGCAGAGATATT  921

seq1  CAAGGAATAAAACATCAAGTTTACAGGGAGACAGGGAATGATCACAGCAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAATAAAACATCAAGTTTACAGGGAGACAGGGAATGATCACAGCAC  971

seq1  AAGTTTGAGTGTAAAGTAAAGATAAGCCTGACAAAGAAGGAGAATGAAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGAGTGTAAAGTAAAGATAAGCCTGACAAAGAAGGAGAATGAAAA  1021

seq1  GAAGAGCAGCCGTATGTAAGGTGCCTTGAAAGCCCATCCATTTCACAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCAGCCGTATGTAAGGTGCCTTGAAAGCCCATCCATTTCACAATT  1071

seq1  TTGCTTTTCTGAATGATAGACACAAACTCCACTTAAATAATGCCTTTTGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTCTGAATGATAGACACAAACTCCACTTAAATAATGCCTTTTGT  1121

seq1  GATCTGCAAGTTGTGCCTTACATAATTTGAAATTTCTCCTTGATCTGGGA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCAAGTTGTGCCTTACATAATTTGAAATTTCTCCTTGATCTGGGA  1171

seq1  GTAAAGTCTTAGAAACCCTTTTGAAGTTGGGAGGAATTCAATAGTTTAAA  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTCTTAGAAACCCTTTTGAAGTTGGGAGGAATTCAATAGTTTAAA  1221

seq1  TTTTGTAAAAGCTGCTCTGTGAATTC  1275
      ||||||||||||||||||||||||||
seq2  TTTTGTAAAAGCTGCTCTGTGAATTC  1247

seq1: chrX_134472059_134473212
seq2: B6Ng01-054L20.g_67_1218

seq1  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGGAATCTACCTTCTTGAGTTCTTTATAATATTGGATATTAGTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAATCTACCTTCTTGAGTTCTTTATAATATTGGATATTAGTCCCC  100

seq1  TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTT  150

seq1  TTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTAT  200

seq1  GAGGTCCCATTTGTCAATTCTCAATCTTACAGCACAAGCCATTTCTGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCCATTTGTCAATTCTCAATCTTACAGCACAAGCCATTTCTGTTC  250

seq1  TATTCAGGAATTTTCCTGTGTGATTCTTAATTGTTGGTTTTACTATGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGGAATTTTCCTGTGTGATTCTTAATTGTTGGTTTTACTATGCTC  300

seq1  CCAAATCAAAAATAAGTAACAAGGACAAATACTTTTTATATTCTTTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCAAAAATAAGTAACAAGGACAAATACTTTTTATATTCTTTCTGC  350

seq1  CACTATTCACAAAACTAGTTATTCTAACTATATAGAAATCATTGTAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTCACAAAACTAGTTATTCTAACTATATAGAAATCATTGTAATAT  400

seq1  ATAGACTTTGGATCTGGTTAATTTTGGTGTGAGATTTTTTTTGTTTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTTTGGATCTGGTTAATTTTGGTGTGAGATTTTTTTTGTTTTATT  450

seq1  TGCAAGTTTTTTTATAATATTTAATTCAAAAAAATTTAAAAATGATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTTTTTTTATAATATTTAATTCAAAAAAATTTAAAAATGATTTTT  500

seq1  AAATCAGCACATGCTACTTGAAAATCTACTTGATGATATGTGACAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGCACATGCTACTTGAAAATCTACTTGATGATATGTGACAAAATA  550

seq1  TAGTCATACACAAAACAGACATGGCTTCTGTCTTCAGAACTTCTAGTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATACACAAAACAGACATGGCTTCTGTCTTCAGAACTTCTAGTATG  600

seq1  ACAGGTCAGATATTAGAAAAAAAATGATTACAGGCTTGGTGAGTGCTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCAGATATTAGAAAAAAAATGATTACAGGCTTGGTGAGTGCTATT  650

seq1  GTTCCCAGCTAATATGTGAGAGGTCATTGGAGCTACCCAGATGCTGATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCAGCTAATATGTGAGAGGTCATTGGAGCTACCCAGATGCTGATTA  700

seq1  TGGGTACCCAAGGAGAAGCTCTTCAAGGCCATGTTTGGGACTGCTTTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACCCAAGGAGAAGCTCTTCAAGGCCATGTTTGGGACTGCTTTGGC  750

seq1  TTCAC-TTGATGTTTAGCAAGAGCAAATAGTGACATTAAAATGATGAAAC  799
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTGATGTTTAGCAAGAGCAAATAGTGACATTAAAATGATGAAAC  800

seq1  AATAGTTGTTATGTTGTGATACTCATGGGGCCTCAGACGATGGGCCAGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTGTTATGTTGTGATACTCATGGGGCCTCAGACGATGGGCCAGTG  850

seq1  AACACTCCAGATGTTAAAAGACTTAGATAGAC-TTAGGAAGTCTGCCTTC  898
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AACACTCCAGATGTTAAAAGACTTAGATAGACTTTAGGAAGTCTGCCTTC  900

seq1  TTCAGTCATTGACTGCAGGTAGAATTGAAGCTTCTAGTTCGACCAAGGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCATTGACTGCAGGTAGAATTGAAGCTTCTAGTTCGACCAAGGTA  950

seq1  TCAGGAATCCTCAGTCTTAGACAACAGAAAGAATTGAAGCTTTT-GGTCT  997
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCAGGAATCCTCAGTCTTAGACAACAGAAAGAATTGAAGCTTTTGGGTCT  1000

seq1  GGACTCACTGAGCCCTTTTCATATAGAATATTTAACATCTCTGTTCAATC  1047
      ||||||||||||||||||||||||||||||||||||||||||| || || 
seq2  GGACTCACTGAGCCCTTTTCATATAGAATATTTAACATCTCTGGTC-ATT  1049

seq1  CTTCCATTGACCAGT-GTCTGCAATTCCCCTTCTCTGGCTCCTTACTTTT  1096
      |||||||||| |||| ||| |||  | |||||||||||||| |||| |||
seq2  CTTCCATTGA-CAGTGGTCGGCA--TTCCCTTCTCTGGCTCTTTAC-TTT  1095

seq1  TAGCCTTCCTCAGCATTAGCATTCTCTTGCCTTTTCTTTATGTCTGCATC  1146
      |||| |  ||||||||||||| |  | || ||||||| ||||||||||||
seq2  TAGCGTCTCTCAGCATTAGCAATTCCCTG-CTTTTCTATATGTCTGCATC  1144

seq1  CCCTCTTC  1154
      ||||||||
seq2  CCCTCTTC  1152