BAC Information

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BAC

Clone NameB6Ng01-054O04
ChromosomeX (Build37)
Map Location 139,788,428 - 139,789,543
singlet/doubletsinglet
Overlap geneChrdl1
Upstream geneAcsl4, Ppia-psx_1100.1, EG633736, EG245651, LOC100039086, EG436235, Tmem164, Ammecr1, Rgag1, LOC209541
Downstream genePak3, Capn6, Dcx, LOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054O04.bB6Ng01-054O04.g
ACCDH877505DH877506
length1,1701,103
definitionDH877505|Mus musculus domesticus DNA, BAC clone: B6Ng01-054O04, 5' end.DH877506|Mus musculus domesticus DNA, BAC clone: B6Ng01-054O04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatacagaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctaagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcttgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagcattatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtagacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatta
aagggtggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggacggatcacagggctccca
atgaggagctagagaagtacccaaggagctaaagggatctgcaccctata
ggtggatcacatatgactaaccagtactccggagctcttgactctagctg
catatgtatcaagatgacctagtcggcatcactggaaggaaagtccatgg
acacccaacttttatatgcccaaaacaggggaacgccagggcaaaagggg
agtgggcggatgggaagagg
gaattcactgtgtcgccagttgtcctcaagctcatagcagttctctacct
cagctacctatggactgggatcatatgcatgcgcttccaagccaaactgt
atggagagtgtcttgatgtggaagagttccttagcataactggctagttt
tcccacaagtctgtaaatatgtactcttcacagttacacatgcttaaggg
caaccttggggaatatgataaaaggttgattgcgagacccaactcggatg
cacttgggctgttagtttcatacatttaacccagatactcttattaattt
catctcttgggtttggaaaaggcaataaagttactgcatccatggggaga
ctctgggaaaggagctcaggagaactcagagagcagccatcctcaggaag
actgaactggtcagaggaccctgctaatcttcaaagggctgtgggcacca
tgacaacatcttgcctgagaagcatttcccaaggactaagcctgcagtgg
catgcatgcagtgtgccatttggcctgccttcacgggccttcccagtact
cccacccaaagcctttctcttcttccaccatgcacattcagaggccctgg
ctatcatgtccagaaagcaagaccctccatggggagcttccccttctacc
ccacccattgttcatgacttgttgttggccagaaatgaatggcatttctc
ggaattagcccaggaatttctgctgataaacaaatgaaactctcaaaggg
aaaagcaatcaacatagtttgaaataaaatcagtgttttcaacttagtct
gtttgcaactttgtttgaagcaagagtcacatctagggtattttaagacc
cagatcagtgaaatgtccttcagtgggttttcatcctagttgcaggccct
cttcaacgagggcctgactcctgctccagcatgtggaagaggtgattact
acattgattccctgtgatctgtgcttcaaggcctgtaagtcagcacatcg
cttcactcatccctatttcccatcaagtctgacactgaggtgggcaccat
ttcaacatcttctttttctgttaacgattctgaataataaccatcttttt
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_139788428_139789543
seq2: B6Ng01-054O04.g_68_1170 (reverse)

seq1  CACAAAAAGATGGGTTTATATATCAGGAAATTCGGTTTACAGAAAAAGAA  50
      |||||||||||||  ||||   ||||  |||   ||| |||||||||| |
seq2  CACAAAAAGATGG--TTATTATTCAG--AAT--CGTTAACAGAAAAAG-A  43

seq1  AGATGTTGAAATGGTGCCCACCTCAGGTGTCAGACCTTGATGGGGAAATA  100
      ||||||||||||||||||||||||| |||||||| |||||| ||||||||
seq2  AGATGTTGAAATGGTGCCCACCTCA-GTGTCAGA-CTTGAT-GGGAAATA  90

seq1  GGGATGAGTGAGGCGAATGTGCTGACTTAACAGGCCTTGGAAGCACAGAT  150
      ||||||||||| ||| |||||||||||| ||||||||| |||||||||||
seq2  GGGATGAGTGAAGCG-ATGTGCTGACTT-ACAGGCCTT-GAAGCACAGAT  137

seq1  CACAGGGAATCAATGTAGTAATCACCTCTTCCACATGCTGGAGCAGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGAATCAATGTAGTAATCACCTCTTCCACATGCTGGAGCAGGAGT  187

seq1  CAGGCCCTCGTTGAAGAGGGCCTGCAACTAGGATGAAAACCCACTGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCTCGTTGAAGAGGGCCTGCAACTAGGATGAAAACCCACTGAAGG  237

seq1  ACATTTCACTGATCTGGGTCTTAAAATACCCTAGATGTGACTCTTGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCACTGATCTGGGTCTTAAAATACCCTAGATGTGACTCTTGCTTC  287

seq1  AAACAAAGTTGCAAACAGACTAAGTTGAAAACACTGATTTTATTTCAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGTTGCAAACAGACTAAGTTGAAAACACTGATTTTATTTCAAAC  337

seq1  TATGTTGATTGCTTTTCCCTTTGAGAGTTTCATTTGTTTATCAGCAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGATTGCTTTTCCCTTTGAGAGTTTCATTTGTTTATCAGCAGAAA  387

seq1  TTCCTGGGCTAATTCCGAGAAATGCCATTCATTTCTGGCCAACAACAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGCTAATTCCGAGAAATGCCATTCATTTCTGGCCAACAACAAGT  437

seq1  CATGAACAATGGGTGGGGTAGAAGGGGAAGCTCCCCATGGAGGGTCTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACAATGGGTGGGGTAGAAGGGGAAGCTCCCCATGGAGGGTCTTGC  487

seq1  TTTCTGGACATGATAGCCAGGGCCTCTGAATGTGCATGGTGGAAGAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGACATGATAGCCAGGGCCTCTGAATGTGCATGGTGGAAGAAGAG  537

seq1  AAAGGCTTTGGGTGGGAGTACTGGGAAGGCCCGTGAAGGCAGGCCAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTTTGGGTGGGAGTACTGGGAAGGCCCGTGAAGGCAGGCCAAATG  587

seq1  GCACACTGCATGCATGCCACTGCAGGCTTAGTCCTTGGGAAATGCTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTGCATGCATGCCACTGCAGGCTTAGTCCTTGGGAAATGCTTCTC  637

seq1  AGGCAAGATGTTGTCATGGTGCCCACAGCCCTTTGAAGATTAGCAGGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGATGTTGTCATGGTGCCCACAGCCCTTTGAAGATTAGCAGGGTC  687

seq1  CTCTGACCAGTTCAGTCTTCCTGAGGATGGCTGCTCTCTGAGTTCTCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACCAGTTCAGTCTTCCTGAGGATGGCTGCTCTCTGAGTTCTCCTG  737

seq1  AGCTCCTTTCCCAGAGTCTCCCCATGGATGCAGTAACTTTATTGCCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTTTCCCAGAGTCTCCCCATGGATGCAGTAACTTTATTGCCTTTT  787

seq1  CCAAACCCAAGAGATGAAATTAATAAGAGTATCTGGGTTAAATGTATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCCAAGAGATGAAATTAATAAGAGTATCTGGGTTAAATGTATGAA  837

seq1  ACTAACAGCCCAAGTGCATCCGAGTTGGGTCTCGCAATCAACCTTTTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACAGCCCAAGTGCATCCGAGTTGGGTCTCGCAATCAACCTTTTATC  887

seq1  ATATTCCCCAAGGTTGCCCTTAAGCATGTGTAACTGTGAAGAGTACATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCCCAAGGTTGCCCTTAAGCATGTGTAACTGTGAAGAGTACATAT  937

seq1  TTACAGACTTGTGGGAAAACTAGCCAGTTATGCTAAGGAACTCTTCCACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGACTTGTGGGAAAACTAGCCAGTTATGCTAAGGAACTCTTCCACA  987

seq1  TCAAGACACTCTCCATACAGTTTGGCTTGGAAGCGCATGCATATGATCCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACACTCTCCATACAGTTTGGCTTGGAAGCGCATGCATATGATCCC  1037

seq1  AGTCCATAGGTAGCTGAGGTAGAGAACTGCTATGAGCTTGAGGACAACTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATAGGTAGCTGAGGTAGAGAACTGCTATGAGCTTGAGGACAACTG  1087

seq1  GCGACACAGTGAATTC  1116
      ||||||||||||||||
seq2  GCGACACAGTGAATTC  1103