BAC Information

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BAC

Clone NameB6Ng01-055J15
ChromosomeX (Build37)1 (Build37)
Map Location 3,127,997 - 3,129,207174,665,380 - 174,665,728
singlet/doubletsingletsinglet
Overlap geneLOC668957
Upstream geneLOC385516, LOC434721
Downstream geneLOC100043932, OTTMUSG00000016406, LOC673743, OTTMUSG00000016405, OTTMUSG00000016411, LOC668961, LOC100042159, LOC100042168, LOC627187, LOC100042185, OTTMUSG00000016407, OTTMUSG00000016437, OTTMUSG00000016420, LOC547057
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055J15.bB6Ng01-055J15.g
ACCDH878001DH878002
length1,1921,052
definitionDH878001|Mus musculus domesticus DNA, BAC clone: B6Ng01-055J15, 5' end.DH878002|Mus musculus domesticus DNA, BAC clone: B6Ng01-055J15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,127,997 - 3,129,207)(174,665,380 - 174,665,728)
sequence
gaattccttagttttcctgaaagccagaaggtgccaccatgcctcaccct
gcttccacacctcttcccaatctgtttctttcttcactctgttcctcttc
cagggagcctctctctgccacccctctctctttggcttccttccacctct
ctttgggcagtcataccattctgccccctcctccaccacccatctccagt
tccttctcctctccccgaccaagaccagaccagataagtcccattccatt
tttagatgaatgcttatgatactagctcacttttctcacaggctgaattg
acaaatgctccatccgttcattttccactcaccaaacacacccagcagag
tgcttcggacagcatgccatacccacagaagcctgcattcttcaggaaaa
ctggtatgtttgcattgagcccaggacacactctagaacagcaacctgag
tccatctggaaattacaatttcaactttatttccaaagaaattaacttta
tttctgtagttgtgataatgcagtaacaaatggttagaagtgctttacca
ggtcgtagagatagatatggaaatcatcttcaaacttgatgaagtacagt
aggcttggcttcaacctggtgaatgaccattctgaccctcctggagcagt
catctttggtgtattccacgtgttttcctatcaggccatccacaagctcc
aggtcgatgtctaaaggagggagatcactgaacacctccacaataaggag
gtcaccctctttataatcatccagaagctggtacatgtataatacaggat
ttctctcataagtaatataaaagttgctatccaagataggcacttgtccc
aggaccatcccactccactcgtccttagagccatgctcaccctcaaatag
atgattaactgctttgccaattatggcatcagcaagctggcatcagtgac
tcgggatgatgccactttgtcagaaagaacttttagggacaataccctcg
tatctgtgtgaaatccagcccatacatgcagtcaatcccatcatcatatt
tctccagtacaggagggattataggccctgatccagcacagtccttcccc
tgggtgaaatgctcatctccctcctccctcatggaaattctgccgcccca
attttcttgggcagccggaatcgttccctctgcctctccgac
gaattctttgttaagctttgtaccccattttttaatgagcttatttgaat
ttctggagttcaacttcttgatctctttgtatatattggatattagtccc
ctatcagatttaagattggtaaaaatcttttcccaatctgttagttgcct
tttttttgtcttattgacagtatcttttgccctacagaagctttgcaatt
ttatgagttcccatttgtcaattcttgatcttagagcacaggccattgtt
cttctgtttaggaaaatttctcctgtgcccatgccttcaaggggtttctc
ccacattttcctctataaatttcagtgtctctggctttatgtggagttcc
ttgatcctcttagtcttgagctttgtacaaagagataagaatggatcaat
ttgcattcttctacatgataactgccagttaagccaacaccatctcttga
aaatgctgtctttttccgttggatggttttagctatgttgttaaagatca
agagatcatatgtgtgtgggttcatttctgggtcttcaattctattccat
tgaactgccagtctgtcgctgtaccagtaccatgtggtttttaccacaat
tactctgtagtacagcttgatgtcaggcagggtgattaccccagaagttc
ttttatttttgaggagagattttgctatcctaggttttttgttattccag
atgaatttgcaaattgccctttgtatctcagtgaaaagttgagttggaat
tttgatggggattgcattgaatctgtagattgcttttgccaagatagcca
tttttactataataatcctgccatccatgagcataagagatcttttccat
cttctgagatcttcaatttctttcttcagaggcttgaagttcttatcata
cagaactttcactttctagttagagtcgcgccaaggtattttatattatt
tgtgactattgtgactatgtgaaggtggttgtgaggattttgcatcgtaa
tcataagagaaattggtctgaagtctctatcttgtgggtctttctggtgg
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_3127997_3129207
seq2: B6Ng01-055J15.b_45_1236 (reverse)

seq1  GTCGGAAGAGGCAGAGGAGCAGATCTCCAGCCCTGCCCCAAAGGAACATT  50
      ||||| |||||||||||    ||| ||| |  ||||||   | ||| |||
seq2  GTCGG-AGAGGCAGAGGGAACGAT-TCCGG--CTGCCC---AAGAAAATT  43

seq1  GTGGGCTGCAGAATTTCTCATGAGAGGAAGGAAGGAGATGAGCATATCAC  100
      | |||| |||||||||| |||  |||| |||| |||||||||||| ||||
seq2  G-GGGCGGCAGAATTTC-CAT--GAGGGAGGAGGGAGATGAGCATTTCAC  89

seq1  ACAGTGGAAAGGGACTGTGCTGGATCAAGTGCCTATAAACCCCTCCCGGT  150
       ||| ||||  ||||||||||||||| || |||||| || |||||| |  
seq2  CCAGGGGAA--GGACTGTGCTGGATC-AGGGCCTAT-AATCCCTCCTG--  133

seq1  AACTGGAGAAATATGATGATGGGATTGACTGCATGTATGGGCTGGAATTT  200
       |||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TACTGGAGAAATATGATGATGGGATTGACTGCATGTATGGGCTGG-ATTT  182

seq1  CACACAGATACGAGGGTATTGTCCCTAAAAGTTCTTTCTGACAAAGTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGATACGAGGGTATTGTCCCTAAAAGTTCTTTCTGACAAAGTGGC  232

seq1  ATCATCCCGAGTCACTGATGCCAGCCTTGCTGATGCCATAATTGGCAAAG  300
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATCATCCCGAGTCACTGATGCCAG-CTTGCTGATGCCATAATTGGCAAAG  281

seq1  CAGTTAATCATCTATTTGAGGGTGAGCATGGCTCTAAGGACGAGTGGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAATCATCTATTTGAGGGTGAGCATGGCTCTAAGGACGAGTGGAGT  331

seq1  GGGATGGTCCTGGGACAAGTGCCTATCTTGGATAGCAACTTTTATATTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGTCCTGGGACAAGTGCCTATCTTGGATAGCAACTTTTATATTAC  381

seq1  TTATGAGAGAAATCCTGTATTATACATGTACCAGCTTCTGGATGATTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGAGAAATCCTGTATTATACATGTACCAGCTTCTGGATGATTATA  431

seq1  AAGAGGGTGACCTCCTTATTGTGGAGGTGTTCAGTGATCTCCCTCCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGTGACCTCCTTATTGTGGAGGTGTTCAGTGATCTCCCTCCTTTA  481

seq1  GACATCGACCTGGAGCTTGTGGATGGCCTGATAGGAAAACACGTGGAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCGACCTGGAGCTTGTGGATGGCCTGATAGGAAAACACGTGGAATA  531

seq1  CACCAAAGATGACTGCTCCAGGAGGGTCAGAATGGTCATTCACCAGGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAGATGACTGCTCCAGGAGGGTCAGAATGGTCATTCACCAGGTTG  581

seq1  AAGCCAAGCCTACTGTACTTCATCAAGTTTGAAGATGATTTCCATATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAGCCTACTGTACTTCATCAAGTTTGAAGATGATTTCCATATCTA  631

seq1  TCTCTACGACCTGGTAAAGCACTTCTAACCATTTGTTACTGCATTATCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACGACCTGGTAAAGCACTTCTAACCATTTGTTACTGCATTATCAC  681

seq1  AACTACAGAAATAAAGTTAATTTCTTTGGAAATAAAGTTGAAATTGTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACAGAAATAAAGTTAATTTCTTTGGAAATAAAGTTGAAATTGTAAT  731

seq1  TTCCAGATGGACTCAGGTTGCTGTTCTAGAGTGTGTCCTGGGCTCAATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGATGGACTCAGGTTGCTGTTCTAGAGTGTGTCCTGGGCTCAATGC  781

seq1  AAACATACCAGTTTTCCTGAAGAATGCAGGCTTCTGTGGGTATGGCATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATACCAGTTTTCCTGAAGAATGCAGGCTTCTGTGGGTATGGCATGC  831

seq1  TGTCCGAAGCACTCTGCTGGGTGTGTTTGGTGAGTGGAAAATGAACGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCGAAGCACTCTGCTGGGTGTGTTTGGTGAGTGGAAAATGAACGGAT  881

seq1  GGAGCATTTGTCAATTCAGCCTGTGAGAAAAGTGAGCTAGTATCATAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATTTGTCAATTCAGCCTGTGAGAAAAGTGAGCTAGTATCATAAGC  931

seq1  ATTCATCTAAAAATGGAATGGGACTTATCTGGTCTGGTCTTGGTCGGGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCTAAAAATGGAATGGGACTTATCTGGTCTGGTCTTGGTCGGGGA  981

seq1  GAGGAGAAGGAACTGGAGATGGGTGGTGGAGGAGGGGGCAGAATGGTATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAAGGAACTGGAGATGGGTGGTGGAGGAGGGGGCAGAATGGTATG  1031

seq1  ACTGCCCAAAGAGAGGTGGAAGGAAGCCAAAGAGAGAGGGGTGGCAGAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCAAAGAGAGGTGGAAGGAAGCCAAAGAGAGAGGGGTGGCAGAGA  1081

seq1  GAGGCTCCCTGGAAGAGGAACAGAGTGAAGAAAGAAACAGATTGGGAAGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCCCTGGAAGAGGAACAGAGTGAAGAAAGAAACAGATTGGGAAGA  1131

seq1  GGTGTGGAAGCAGGGTGAGGCATGGTGGCACCTTCTGGCTTTCAGGAAAA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGAAGCAGGGTGAGGCATGGTGGCACCTTCTGGCTTTCAGGAAAA  1181

seq1  CTAAGGAATTC  1211
      |||||||||||
seq2  CTAAGGAATTC  1192

seq1: chr1_174665380_174665728
seq2: B6Ng01-055J15.g_840_1119 (reverse)

seq1  AACCA-CAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCT  49
      ||||| ||||||||||||   ||||||||| |||||||||||||||||||
seq2  AACCACCAGAAAGACCCA--CAAGATAGAG-ACTTCAGACCAATTTCTCT  47

seq1  TATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCC  99
      ||||| || |||||| ||||||||||                       |
seq2  TATGATTA-CGATGC-AAAATCCTCA-----------------------C  72

seq1  AAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCA  149
      |  | ||| || |   | ||| | ||  | || ||  |  |   || || 
seq2  A--ACCACCTTCACATAGTCA-CAATAGTCACAAATAATATAAAATACC-  118

seq1  GGGATGCAGGGATGGTTTAATATACGAAAATCCATCAACGTAATCCATTA  199
          ||  | ||   | |||  || ||||     | || ||  |  || |
seq2  ---TTGGCGCGA--CTCTAA-CTA-GAAA----GTGAAAGTTCTGTATGA  157

seq1  TATAAAC----AAACTC-AAAGACAAAAACCACATGATCATCTCGTTAGA  244
      ||  |||    |  |||  |||| | |||     |||  |||||   |||
seq2  TAAGAACTTCAAGCCTCTGAAGAAAGAAA----TTGAAGATCTCAGAAGA  203

seq1  TGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTT  294
      ||              || ||||||    |  |  |||||          
seq2  TG--------------GAAAAGATCTCTTATGC--TCATG--------GA  229

seq1  TGGAAAGATCAGGA-ATTCAAGGCCCATACCTAAACATGATAAAAGCAAT  343
      ||| | ||| |  | | | ||     ||  || | | ||  |||||||||
seq2  TGGCAGGATTATTATAGTAAA----AATGGCT-ATCTTGGCAAAAGCAAT  274

seq1  CTACAG  349
      ||||||
seq2  CTACAG  280