BAC Information

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BAC

Clone NameB6Ng01-057A07
Chromosome1 (Build37)X (Build37)
Map Location 80,814,975 - 80,816,046159,109,867 - 159,110,441
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSerpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10
Downstream geneLOC665092, 9430031J16Rik, EG621020, LOC433328, EG665145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057A07.bB6Ng01-057A07.g
ACCDH879009DH879010
length1,051955
definitionDH879009|Mus musculus domesticus DNA, BAC clone: B6Ng01-057A07, 5' end.DH879010|Mus musculus domesticus DNA, BAC clone: B6Ng01-057A07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,814,975 - 80,816,046)(159,109,867 - 159,110,441)
sequence
gaattctgggaacaaggctgtcaacacaggccgatcagttggttaaaact
tccatgactatggagaggatagactctccagagtctaattacaatttctc
tcaggcaagctttagcccctaaaagggcattcctttccacctctgtgtca
gacctgacaatctgagaagcagatctaaaacaacaacaataacaacaaag
ccctttagagtatatttatttaacaaaaccttattctgtaccaatcaaaa
ggttaaaaatgctagtggataacatttgaggtctctgcctgactatagtt
cacctgtgaaacttccacaactgcattgtataaaggccttggtatataac
ttattttgatctgtcaccacaaaaattccatgaaactgcttccacatagc
aaaagtacaacctggcataacctacacccttgtcccttggtcacgatcac
acagatttggtcacatcaacataagtgaggttcacacgcagctgccaatg
tggagactgtttctcaaggaccccaaggttagatatgttcctatgaatgt
taaaacaatcaggctaatgtcagtgctgtttgcaaggtcagagtgacctt
caatttataacataaatctgtagtcatggaggctctctctaccttcatgc
tagaatagacagtgtgagccagccttatggagatgacaatggtgatttag
gaatggcaaagaagccatgtgtaggaagctggttagagaggagaaggacc
ctcctgacccagaacaatctcactttctgtgtatttaaggaccattgtta
agtaatttcagttatctgcattcaaggatacagggctaaatactaataag
gtatataccagactcactaattttattattcaagagtaattaaaattttg
tgtgtttttattgccgttgtattattaaaaacttaattctaccttgttag
ggacgagtgaactatccaaggacatgccatattgtcgtttacagccatgc
tattatgttttcattgacatactcttaaatactatccagaagaaatttta
a
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttcttggaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactatttataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcagttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgatatt
tcctgccgtctactcctcttgggtgatttgcttcctttttttctagggct
ttaaatgtgtgtcaagctgctatatgtgctgtctcccgttcttcttggag
gactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_80814975_80816046
seq2: B6Ng01-057A07.b_47_1097 (reverse)

seq1  TTAAAATTTCTTCTTGTGATAGTAATTTAAAGAGATTAGTCAATAGAAAA  50
      ||||||||||||||   |||||||  || ||||| |  |||||| |||||
seq2  TTAAAATTTCTTCT--GGATAGTA--TTTAAGAG-TATGTCAAT-GAAAA  44

seq1  CATTAATTAGCATGGCTTGTAAAACGACCCTATAATGGCATGTGCTTTGG  100
      |||  | ||||||||| ||| |||||||   |  ||||||||| | ||||
seq2  CAT--AATAGCATGGC-TGT-AAACGAC---AATATGGCATGT-CCTTGG  86

seq1  ATAGTTCACTCTGTCCCTAACAAAGGTAGGAAATATAGTTATTTAATAAT  150
      ||||||||||| ||||||||| |||||||  |||  |||| |||||||||
seq2  ATAGTTCACTC-GTCCCTAAC-AAGGTAG--AATTAAGTT-TTTAATAAT  131

seq1  ACCAACGGCAATAAAAACACACAAAATTTTAATTACTCTTGAATAATAAA  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-CAACGGCAATAAAAACACACAAAATTTTAATTACTCTTGAATAATAAA  180

seq1  ATTAGTGAGTCTGGTATATACCTTATTAGTATTTAGCCCTGTATCCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGAGTCTGGTATATACCTTATTAGTATTTAGCCCTGTATCCTTGA  230

seq1  ATGCAGATAACCTGAAATTACTTAACAATGGTCCTTAAATACACAGAAAG  300
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGATAA-CTGAAATTACTTAACAATGGTCCTTAAATACACAGAAAG  279

seq1  TGAGATTGTTCTGGGTCAGGAGGGTCCTTCTCCTCTCTAACCAGCTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTGTTCTGGGTCAGGAGGGTCCTTCTCCTCTCTAACCAGCTTCCT  329

seq1  ACACATGGCTTCTTTGCCATTCCTAAATCACCATTGTCATCTCCATAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGGCTTCTTTGCCATTCCTAAATCACCATTGTCATCTCCATAAGG  379

seq1  CTGGCTCACACTGTCTATTCTAGCATGAAGGTAGAGAGAGCCTCCATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCACACTGTCTATTCTAGCATGAAGGTAGAGAGAGCCTCCATGAC  429

seq1  TACAGATTTATGTTATAAATTGAAGGTCACTCTGACCTTGCAAACAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATTTATGTTATAAATTGAAGGTCACTCTGACCTTGCAAACAGCAC  479

seq1  TGACATTAGCCTGATTGTTTTAACATTCATAGGAACATATCTAACCTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTAGCCTGATTGTTTTAACATTCATAGGAACATATCTAACCTTGG  529

seq1  GGTCCTTGAGAAACAGTCTCCACATTGGCAGCTGCGTGTGAACCTCACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTGAGAAACAGTCTCCACATTGGCAGCTGCGTGTGAACCTCACTT  579

seq1  ATGTTGATGTGACCAAATCTGTGTGATCGTGACCAAGGGACAAGGGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGATGTGACCAAATCTGTGTGATCGTGACCAAGGGACAAGGGTGTA  629

seq1  GGTTATGCCAGGTTGTACTTTTGCTATGTGGAAGCAGTTTCATGGAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATGCCAGGTTGTACTTTTGCTATGTGGAAGCAGTTTCATGGAATTT  679

seq1  TTGTGGTGACAGATCAAAATAAGTTATATACCAAGGCCTTTATACAATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTGACAGATCAAAATAAGTTATATACCAAGGCCTTTATACAATGC  729

seq1  AGTTGTGGAAGTTTCACAGGTGAACTATAGTCAGGCAGAGACCTCAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGGAAGTTTCACAGGTGAACTATAGTCAGGCAGAGACCTCAAATG  779

seq1  TTATCCACTAGCATTTTTAACCTTTTGATTGGTACAGAATAAGGTTTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCACTAGCATTTTTAACCTTTTGATTGGTACAGAATAAGGTTTTGT  829

seq1  TAAATAAATATACTCTAAAGGGCTTTGTTGTTATTGTTGTTGTTTTAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATATACTCTAAAGGGCTTTGTTGTTATTGTTGTTGTTTTAGAT  879

seq1  CTGCTTCTCAGATTGTCAGGTCTGACACAGAGGTGGAAAGGAATGCCCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTCAGATTGTCAGGTCTGACACAGAGGTGGAAAGGAATGCCCTT  929

seq1  TTAGGGGCTAAAGCTTGCCTGAGAGAAATTGTAATTAGACTCTGGAGAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGCTAAAGCTTGCCTGAGAGAAATTGTAATTAGACTCTGGAGAGT  979

seq1  CTATCCTCTCCATAGTCATGGAAGTTTTAACCAACTGATCGGCCTGTGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTCTCCATAGTCATGGAAGTTTTAACCAACTGATCGGCCTGTGTT  1029

seq1  GACAGCCTTGTTCCCAGAATTC  1072
      ||||||||||||||||||||||
seq2  GACAGCCTTGTTCCCAGAATTC  1051

seq1: chrX_159109867_159110441
seq2: B6Ng01-057A07.g_458_1025 (reverse)

seq1  GAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACTAGCAGCTTGACAA  50
      |||| ||||||||||| |||||||||||||||||| |||||||||||| |
seq2  GAGT-CCTCCAAGAAG-AACGGGAGACAGCACATA-TAGCAGCTTGAC-A  46

seq1  CACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGT  100
      ||||| | |||||||||||||||||||||||||| |||||||||||||||
seq2  CACAT-TTAAAGCCCTAGAAAAAAAGGAAGCAAA-TCACCCAAGAGGAGT  94

seq1  AGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAAC  150
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGACGGCAGGAAAT-ATCAAACTCAGGGGTGAAATCAACCAAGTGGAAAC  143

seq1  AAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGA  193

seq1  AAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGG  243

seq1  GACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAAC  300
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GACAAAATCCTAATTAACAAAATCAGAACTGAAAAGGGAGACATAACAAC  293

seq1  AGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAT  343

seq1  ACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGA  393

seq1  TACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCC  443

seq1  CATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAA  500
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATATCACCTAAAGAAATAGAAGCAGTTATAAATAGTCTCCCAACCAAAA  493

seq1  AAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCCAA  543

seq1  GAAGATCTAATTCCAATTCTGCACA  575
      |||||||||||||||||||||||||
seq2  GAAGATCTAATTCCAATTCTGCACA  568