BAC Information

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BAC

Clone NameB6Ng01-058J19
ChromosomeX (Build37)
Map Location 104,671,100 - 104,672,299
singlet/doubletsinglet
Overlap genenone
Upstream geneGm784, Cysltr1, EG331493, LOC668490, LOC100042772, LOC100043263, Zcchc5, Gpr23, P2ry10, A630033H20Rik, Gpr174, LOC668502, LOC622613, LOC385404, Itm2a
Downstream gene4933401B06Rik, Tbx22, 2610002M06Rik, Gm732, Gm378, LOC668516
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058J19.bB6Ng01-058J19.g
ACCDH880143DH880144
length1,1711,154
definitionDH880143|Mus musculus domesticus DNA, BAC clone: B6Ng01-058J19, 5' end.DH880144|Mus musculus domesticus DNA, BAC clone: B6Ng01-058J19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatctctagacaaattaggttgttaatccaattagtaaagttag
tgccaaagctataatcgaatcagatcaaacaggaagaagagcaaagagga
caaagagtgcagagaagtacccaggccattaagccagacaacactgttgc
aaaatagtcagagagaattccaccttcctttgaagtcatattatttctaa
cttacagcaaggtaaaggcatgctctgaaaattcaaaagttgtgaaattc
taggcaatttgacacttacattgtcaggttcggctttggaatactgaaat
cttttgtgaatgctttttgtgaaaatccataaagaagattccagcctttg
agcagtccattattaatccgtatttccacagaaacacattagttaaagtt
aaccccatctcagtggtatggtacatatcgatgttcttttccctttaagt
attgatgaatgcagacttccagactggtttatttcatgaaacaaaatatg
aacatcataataaaatagtacataacgtgaatggaacctacaattggaat
caaagatggtttaaggttgctatatgtcagatcaagggcagaagttgtct
atcagaagctacacccttcctaataacatcttatcttatgtctgaaaagt
caacacttgcccattatgtctagaatgagtaacaattctctctgttcatt
ggctgctatttaattccatgtcttcaatgaggaaaccgaacagattaggt
aacttggcaagtcactgaatctgaaccaatcaaagcctctttcccaggag
cttaaactgaggaaagcaacaatgtccgaaagaagatttgcaacatatat
tatattatagtagcaggcgtggtagtgatgattacatgttgtcaaccagg
aattctaatcagccagtgcttaaagaaacagttgctatggttttgatgtc
tgtttctccttttctttgattcttctgatcttactgtctaaacacattaa
ttttaagagaccttgctttttctttttctaggttcccccctctttttttc
attttcctaattgcttgtattttgccagggaggctagatattgtatgtta
ttttgaataaacttaatgctctgggtgagaagaaaattctggtcctgcca
gctatataatcttctttgttc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggagagctagagaagtacccaagagctaaagggatctcaaccctatag
gtggacacatatgactaaccagtaccctggagctctgactctagctgcaa
tgatcaaaagatggcctagtccgcatcacttgaaagaaggtcatgaaacc
agactttggtggtctcggtacaggaacccaggccaaaggggagatgtgtg
ggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_104671100_104672299
seq2: B6Ng01-058J19.b_47_1217 (reverse)

seq1  GAACAAAGAAGTATTTAATATAGCCTTTGTGCCCAAATGTACAGAATATT  50
      ||||||||||| |||  |||||||     || |   | |  |||||| ||
seq2  GAACAAAGAAG-ATT--ATATAGC-----TGGC---AGGACCAGAAT-TT  38

seq1  TTCTCTTACCACAGAGCCATGTAGTTTAATTCAGAATAACATTACATTAT  100
      |  ||| ||| ||||| |||  ||||| ||||| ||||||| |||| |||
seq2  TCTTCTCACC-CAGAG-CATTAAGTTT-ATTCAAAATAACA-TACAATAT  84

seq1  CTTAGCCTTCACTGGCAAAAATACAAAGCAATTTTAGGAAAATGAAAAAA  150
      | ||||| || ||||| ||||||| ||||||  ||||||||||| |||||
seq2  C-TAGCC-TCCCTGGC-AAAATAC-AAGCAA--TTAGGAAAATG-AAAAA  127

seq1  AAGAGGGGGGGAAACCTAGAAAAAAGAAAATAGCAAGGTCTCTTAAAATT  200
      ||||||||||  ||||||| |||||||||| |||||||||||||||||||
seq2  AAGAGGGGGG--AACCTAG-AAAAAGAAAA-AGCAAGGTCTCTTAAAATT  173

seq1  AATGTGTTTAGACAGTAAGATCAGAAGAATCAAAGAAAAGGAGAAACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AATGTGTTTAGACAGTAAGATCAGAAGAATCAAAGAAAAGGAGAAACAG-  222

seq1  ACATCAAAACCATAGCAACTGTTTCTTTAAGCACTGGCCTGATTAGAATT  300
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACATCAAAACCATAGCAACTGTTTCTTTAAGCACTGG-CTGATTAGAATT  271

seq1  CCTGGTTGACAACATGTAATCATCACTACCACGCCTGCTACTATAATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTGACAACATGTAATCATCACTACCACGCCTGCTACTATAATATA  321

seq1  ATATATGTTGCAAATCTTCTTTCGGACATTGTTGCTTTCCTCAGTTTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTTGCAAATCTTCTTTCGGACATTGTTGCTTTCCTCAGTTTAAG  371

seq1  CTCCTGGGAAAGAGGCTTTGATTGGTTCAGATTCAGTGACTTGCCAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGGAAAGAGGCTTTGATTGGTTCAGATTCAGTGACTTGCCAAGTT  421

seq1  ACCTAATCTGTTCGGTTTCCTCATTGAAGACATGGAATTAAATAGCAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAATCTGTTCGGTTTCCTCATTGAAGACATGGAATTAAATAGCAGCC  471

seq1  AATGAACAGAGAGAATTGTTACTCATTCTAGACATAATGGGCAAGTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACAGAGAGAATTGTTACTCATTCTAGACATAATGGGCAAGTGTTG  521

seq1  ACTTTTCAGACATAAGATAAGATGTTATTAGGAAGGGTGTAGCTTCTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCAGACATAAGATAAGATGTTATTAGGAAGGGTGTAGCTTCTGAT  571

seq1  AGACAACTTCTGCCCTTGATCTGACATATAGCAACCTTAAACCATCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACTTCTGCCCTTGATCTGACATATAGCAACCTTAAACCATCTTTG  621

seq1  ATTCCAATTGTAGGTTCCATTCACGTTATGTACTATTTTATTATGATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAATTGTAGGTTCCATTCACGTTATGTACTATTTTATTATGATGTT  671

seq1  CATATTTTGTTTCATGAAATAAACCAGTCTGGAAGTCTGCATTCATCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTGTTTCATGAAATAAACCAGTCTGGAAGTCTGCATTCATCAAT  721

seq1  ACTTAAAGGGAAAAGAACATCGATATGTACCATACCACTGAGATGGGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAGGGAAAAGAACATCGATATGTACCATACCACTGAGATGGGGTT  771

seq1  AACTTTAACTAATGTGTTTCTGTGGAAATACGGATTAATAATGGACTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAACTAATGTGTTTCTGTGGAAATACGGATTAATAATGGACTGCT  821

seq1  CAAAGGCTGGAATCTTCTTTATGGATTTTCACAAAAAGCATTCACAAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCTGGAATCTTCTTTATGGATTTTCACAAAAAGCATTCACAAAAG  871

seq1  ATTTCAGTATTCCAAAGCCGAACCTGACAATGTAAGTGTCAAATTGCCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTATTCCAAAGCCGAACCTGACAATGTAAGTGTCAAATTGCCTA  921

seq1  GAATTTCACAACTTTTGAATTTTCAGAGCATGCCTTTACCTTGCTGTAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCACAACTTTTGAATTTTCAGAGCATGCCTTTACCTTGCTGTAAG  971

seq1  TTAGAAATAATATGACTTCAAAGGAAGGTGGAATTCTCTCTGACTATTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATAATATGACTTCAAAGGAAGGTGGAATTCTCTCTGACTATTTT  1021

seq1  GCAACAGTGTTGTCTGGCTTAATGGCCTGGGTACTTCTCTGCACTCTTTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGTGTTGTCTGGCTTAATGGCCTGGGTACTTCTCTGCACTCTTTG  1071

seq1  TCCTCTTTGCTCTTCTTCCTGTTTGATCTGATTCGATTATAGCTTTGGCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTGCTCTTCTTCCTGTTTGATCTGATTCGATTATAGCTTTGGCA  1121

seq1  CTAACTTTACTAATTGGATTAACAACCTAATTTGTCTAGAGATGGAATTC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTTACTAATTGGATTAACAACCTAATTTGTCTAGAGATGGAATTC  1171