BAC Information

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BAC

Clone NameB6Ng01-059E04
ChromosomeX (Build37)
Map Location 78,533,539 - 78,672,916
singlet/doubletdoublet
Overlap gene4930595M18Rik
Upstream geneLOC546338, LOC100042229, LOC667776, EG629182, Tmem47, LOC100041462, LOC100041474
Downstream geneEG667799, EG629310
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059E04.bB6Ng01-059E04.g
ACCDH880593DH880594
length1,0821,041
definitionDH880593|Mus musculus domesticus DNA, BAC clone: B6Ng01-059E04, 5' end.DH880594|Mus musculus domesticus DNA, BAC clone: B6Ng01-059E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,533,539 - 78,534,638)(78,671,911 - 78,672,916)
sequence
gaattcactctgtagaccagactggcctcgaactcagaaatctgcctacc
tctgcctcccaagggctgggattaaaggcatgcaccaccactgctgggcc
aatactggataatttctaaactgaaattatacctgtaaatgtgggttaga
tccacaacaaaataaaagaaaaatgtaaaatgtcacttggttaacaaatt
ccttgcatctgaaatgatttattttaggatcaacctcttttttttttcac
tattttttttccattttttattaggtatttagctcatttacatttccaat
gctataccaaaagtcccccatatccacccacccccaggatcaacctcttg
gtagaacaaggactcaattattttcagattttctaatcccagtgggatgt
ctaatatataacaaacacacaatagttatttattcagtggcatacatcag
aagattttgcttgggtattttgtcaaaaattcacccctaaaagagtatca
aaaatgcatatcaatcaaagtagtttccatttttagacttaaagcagtga
ggagaacatcttgacacagggttagaaatacatcaaagtgatttgagaag
gctcttttaaatgtctcaggtggatgattttaaggcaggtctttcaatct
gggataatgactaataatgggcagagtttatgatactggcacaatgtggc
aaagttttaatatgtatattaatgaatgagctgctaatcctgcttatgaa
cattttttcaggaagtattacttgattccagagttaaattttctggtatg
aatacaattgaaaagaggaaaagaaaatttgtcctcaaagtacttggatc
tattgaaagagcaatcacacattttcctcatgtagccaataatttgtatc
actttaattaaattttgctattgagagcttttaaatgttctgtctatttt
acttatgtatattgatatttgcctgcatgaatatctgtgtgaaggtgcag
gtgtcttgagttagagaaaatggtgagctatcatgtaggtgctgagatga
ctaggtcctctagcatctttctgcttcagcat
gaattctttctttagctctgtaccccatgtttaatttgaatttctggagt
tcagcttcttgagctctttgtatatattggctcttagtcccttatcagat
ttaggattggtaaaaattctttcacaatttgttggtggccttcttgtctt
attgacagtatcttttgccatacagaagctttacaattttctgaggtcca
atatgtctcttttgaccgtatagcataggccattgctattctgtttagga
attttccccctgtgcccatatcttcgagggttttccccaatttctccttt
ataaatttcagtgtctctggttttatgtggtattctttgatccacttatc
cttgagctttgtacacggagataagaatggatcaattttgcattcttcta
catgtcagttgtcccagcaccatttgttgaaaatgctgactttttcccac
tagatggttttagctcccttgtcaaagatcaggtgatcataggtgtgtgg
gtttatttgtgggtcttcagttctattccattgatctacctgcatattct
taaaatgttttctgattttctttaagaaattcctaagtttatgcaggaaa
atattaaacttaccaatttgaatttttactatccttctctttacttaaat
ccagtttacattggtaaatttgattctgaaagtattacatcatcatgaaa
tatctagttctctaggctcttctccatgtggtattttttttttaatattg
aaaatacattcttctctcataccatgtacctctaccacagttttctctcc
ttaaactccactagctccactcaaacttcccttctctaccatatatattt
cctcctctgttttcctttagaaaagagccagcctccaaaagacaataggg
taaaacagatacattagaaaatgcaaaaaaaagggctggagagatgtccc
atctatagagcactgactgctcttctggagtcctcagttcatcccatcag
cacatggtggctcacaacatttctttaaacaaacacaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_78533539_78534638
seq2: B6Ng01-059E04.b_44_1125

seq1  GAATTCACTCTGTAGACCAGACTGGCCTCGAACTCAGAAATCTGCCTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGACTGGCCTCGAACTCAGAAATCTGCCTACC  50

seq1  TCTGCCTCCCAAGGGCTGGGATTAAAGGCATGCACCACCACTGCTGGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGGGCTGGGATTAAAGGCATGCACCACCACTGCTGGGCC  100

seq1  AATACTGGATAATTTCTAAACTGAAATTATACCTGTAAATGTGGGTTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGGATAATTTCTAAACTGAAATTATACCTGTAAATGTGGGTTAGA  150

seq1  TCCACAACAAAATAAAAGAAAAATGTAAAATGTCACTTGGTTAACAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAACAAAATAAAAGAAAAATGTAAAATGTCACTTGGTTAACAAATT  200

seq1  CCTTGCATCTGAAATGATTTATTTTAGGATCAACCTCTTTTTTTTTTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCATCTGAAATGATTTATTTTAGGATCAACCTCTTTTTTTTTTCAC  250

seq1  TATTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAAT  300

seq1  GCTATACCAAAAGTCCCCCATATCCACCCACCCCCAGGATCAACCTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACCAAAAGTCCCCCATATCCACCCACCCCCAGGATCAACCTCTTG  350

seq1  GTAGAACAAGGACTCAATTATTTTCAGATTTTCTAATCCCAGTGGGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACAAGGACTCAATTATTTTCAGATTTTCTAATCCCAGTGGGATGT  400

seq1  CTAATATATAACAAACACACAATAGTTATTTATTCAGTGGCATACATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATATAACAAACACACAATAGTTATTTATTCAGTGGCATACATCAG  450

seq1  AAGATTTTGCTTGGGTATTTTGTCAAAAATTCACCCCTAAAAGAGTATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTGCTTGGGTATTTTGTCAAAAATTCACCCCTAAAAGAGTATCA  500

seq1  AAAATGCATATCAATCAAAGTAGTTTCCATTTTTAGACTTAAAGCAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCATATCAATCAAAGTAGTTTCCATTTTTAGACTTAAAGCAGTGA  550

seq1  GGAGAACATCTTGACACAGGGTTAGAAATACATCAAAGTGATTTGAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACATCTTGACACAGGGTTAGAAATACATCAAAGTGATTTGAGAAG  600

seq1  GCTCTTTTAAATGTCTCAGGTGGATGATTTTAAGGCAGGTCTTTCAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTTAAATGTCTCAGGTGGATGATTTTAAGGCAGGTCTTTCAATCT  650

seq1  GGGATAATGACTAATAATGGGCAGAGTTTATGATACTGGCACAATGTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAATGACTAATAATGGGCAGAGTTTATGATACTGGCACAATGTGGC  700

seq1  AAAGTTTTAATATGTATATTAATGAATGAGCTGCTAATCCTGCTTATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTAATATGTATATTAATGAATGAGCTGCTAATCCTGCTTATGAA  750

seq1  CATTTTTTCAGGAAGTATTACTTGATTCCAGAGTTAAATTTTCTGGTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTCAGGAAGTATTACTTGATTCCAGAGTTAAATTTTCTGGTATG  800

seq1  AATACAATTGAAAAGAGGAAAAGAAAATTTGTCCTCAAAGTACTTGGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAATTGAAAAGAGGAAAAGAAAATTTGTCCTCAAAGTACTTGGATC  850

seq1  TATTGAAAGAGCAATCACACATTTTCCTCATGTAGCCAATAATTTTGTAT  900
      |||||||||||||||||||||||||||||||||||||||||| |||||| 
seq2  TATTGAAAGAGCAATCACACATTTTCCTCATGTAGCCAATAA-TTTGTA-  898

seq1  TCACTTTAATTAAATTTTGCTATTGAAGAGCTTTTTAAATGTTCTGTTCT  950
      ||||||||||||||||||||||||| ||||| |||||||||||||| |||
seq2  TCACTTTAATTAAATTTTGCTATTG-AGAGC-TTTTAAATGTTCTG-TCT  945

seq1  ATTTTTACTTTATGTATATTGATATTTTGCCTGCATGAATATCTGTGTGA  1000
      | |||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  A-TTTTAC-TTATGTATATTGATA-TTTGCCTGCATGAATATCTGTGTGA  992

seq1  AGGTGCCAGGTGCCCTGGAGTTAGAGACAATGGTGAGCTATCATGTAGGT  1050
      ||||| ||||||  || |||||||||| ||||||||||||||||||||||
seq2  AGGTG-CAGGTG-TCTTGAGTTAGAGAAAATGGTGAGCTATCATGTAGGT  1040

seq1  GCTGAGAATTGAACCTAGGGTCCTCTAAGCCATCTTTTCTGCTTCAGCAT  1100
      |||||||  |||  ||| |||||||||   |||| |||||||||||||||
seq2  GCTGAGA--TGA--CTA-GGTCCTCTA--GCATC-TTTCTGCTTCAGCAT  1082

seq1: chrX_78671911_78672916
seq2: B6Ng01-059E04.g_113_1107 (reverse)

seq1  TTGTT-TGTTTGTTTTAAAGATATGGTTGTGAGCCACCATGTGCTTGATG  49
      ||||| |||||| |||||||| || ||||||||||||||||||| |||||
seq2  TTGTTGTGTTTG-TTTAAAGAAAT-GTTGTGAGCCACCATGTGC-TGATG  47

seq1  GGAATTGAACTGAGGACCTCCAGAAGAGCAGTCAGTGCTCTTAATAGATG  99
      |||  ||||||||||| ||||||||||||||||||||||||  |||||||
seq2  GGA--TGAACTGAGGA-CTCCAGAAGAGCAGTCAGTGCTCT--ATAGATG  92

seq1  GGACATCTCTCCAGCCCTTTTTTTTTGCCTTTTCTAATTGTATCTTGTTT  149
      ||||||||||||||||| |||||||||| |||||||| |||||| |||||
seq2  GGACATCTCTCCAGCCC-TTTTTTTTGCATTTTCTAA-TGTATC-TGTTT  139

seq1  TACCCTATTTGTCTTTTGGAGGCTGGCTCTTTTCTAAAGGAAAACAGAGG  199
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTA-TTGTCTTTTGGAGGCTGGCTCTTTTCTAAAGGAAAACAGAGG  188

seq1  AGGAAATATATATGGTAGAGAAGGGAAGTTTGAGTGGAGCTAGTGGAGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATATATATGGTAGAGAAGGGAAGTTTGAGTGGAGCTAGTGGAGTT  238

seq1  TAAGGAGAGAAAACTGTGGTAGAGGTACATGGTATGAGAGAAGAATGTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGAGAAAACTGTGGTAGAGGTACATGGTATGAGAGAAGAATGTAT  288

seq1  TTTCAATATTAAAAAAAAAATACCACATGGAGAAGAGCCTAGAGAACTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATATTAAAAAAAAAATACCACATGGAGAAGAGCCTAGAGAACTAG  338

seq1  ATATTTCATGATGATGTAATACTTTCAGAATCAAATTTACCAATGTAAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCATGATGATGTAATACTTTCAGAATCAAATTTACCAATGTAAAC  388

seq1  TGGATTTAAGTAAAGAGAAGGATAGTAAAAATTCAAATTGGTAAGTTTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTAAGTAAAGAGAAGGATAGTAAAAATTCAAATTGGTAAGTTTAA  438

seq1  TATTTTCCTGCATAAACTTAGGAATTTCTTAAAGAAAATCAGAAAACATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCTGCATAAACTTAGGAATTTCTTAAAGAAAATCAGAAAACATT  488

seq1  TTAAGAATATGCAGGTAGATCAATGGAATAGAACTGAAGACCCACAAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATATGCAGGTAGATCAATGGAATAGAACTGAAGACCCACAAATA  538

seq1  AACCCACACACCTATGATCACCTGATCTTTGACAAGGGAGCTAAAACCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACACACCTATGATCACCTGATCTTTGACAAGGGAGCTAAAACCAT  588

seq1  CTAGTGGGAAAAAGTCAGCATTTTCAACAAATGGTGCTGGGACAACTGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGGGAAAAAGTCAGCATTTTCAACAAATGGTGCTGGGACAACTGAC  638

seq1  ATGTAGAAGAATGCAAAATTGATCCATTCTTATCTCCGTGTACAAAGCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAAGAATGCAAAATTGATCCATTCTTATCTCCGTGTACAAAGCTC  688

seq1  AAGGATAAGTGGATCAAAGAATACCACATAAAACCAGAGACACTGAAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATAAGTGGATCAAAGAATACCACATAAAACCAGAGACACTGAAATT  738

seq1  TATAAAGGAGAAATTGGGGAAAACCCTCGAAGATATGGGCACAGGGGGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGGAGAAATTGGGGAAAACCCTCGAAGATATGGGCACAGGGGGAA  788

seq1  AATTCCTAAACAGAATAGCAATGGCCTATGCTATACGGTCAAAAGAGACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTAAACAGAATAGCAATGGCCTATGCTATACGGTCAAAAGAGACA  838

seq1  TATTGGACCTCAGAAAATTGTAAAGCTTCTGTATGGCAAAAGATACTGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGACCTCAGAAAATTGTAAAGCTTCTGTATGGCAAAAGATACTGTC  888

seq1  AATAAGACAAGAAGGCCACCAACAAATTGTGAAAGAATTTTTACCAATCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGACAAGAAGGCCACCAACAAATTGTGAAAGAATTTTTACCAATCC  938

seq1  TAAATCTGATAAGGGACTAAGAGCCAATATATACAAAGAGCTCAAGAAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTGATAAGGGACTAAGAGCCAATATATACAAAGAGCTCAAGAAGC  988

seq1  TGAACTC  1006
      |||||||
seq2  TGAACTC  995