BAC Information

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BAC

Clone NameB6Ng01-060E12
ChromosomeX (Build37)
Map Location 85,298,921 - 85,300,081
singlet/doubletsinglet
Overlap genenone
Upstream geneIl1rapl1, LOC667876
Downstream geneEG667883, LOC667891, EG245506, LOC667911, LOC100041707, EG436213, LOC667919, LOC100041727
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060E12.bB6Ng01-060E12.g
ACCDH881298DH881299
length1,1911,125
definitionDH881298|Mus musculus domesticus DNA, BAC clone: B6Ng01-060E12, 5' end.DH881299|Mus musculus domesticus DNA, BAC clone: B6Ng01-060E12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttagtacatacatttaatcccaaacaatggtgtcaaattgaga
ggcagataaaatgatgaatcagagatttatttatttgacagaatgggtca
gaaataggatacacccagctctcaggagtaaagctattaggagcagccca
gggagagagaattcatcagttcacttcctcaatgagttgaaagttgagtc
cagtgatattcagtgtaataagtttactgcaatagagttcattccagagt
tcatgcagctcaggccaggtcagaagacgcagttgaagccagagaatagg
aaggagccagaaattagagcagataaccagagttagtttgaggcagtgta
gagcaatttagtcagaagctgagaaaagccaatctgaattagtcagcttg
gagaggagttttgatccagaatagctaaggtgaatcattcagtcaaagtt
cagaaagaaccagaaaggctgagcttaatcagtaactagcctccaggaat
acaatatctggcaaatatcaggcaaataaaagatgcttttacaaattcgt
ttaagaatgggatttgttttacaattctatttattcatgttttcttataa
gtgcagatttagtagagaactgagagtagggttatatcctttgctgtttg
atagtgaagtttacttagtaaagaaggatactttttatgcttactgtgca
tcagacaccgtatgatccatacatgtccttatatactgcagtaaatgaaa
gaaacttgtatttgctctaatattgttttcaatttagagtagtagtaaat
atattcaacaattttgtgataatttattgactacctatgttgggccagcc
actgtttgtaacacgtgtttgtgaattggaaaaatgcctaacatatagca
catgcagataataagtgaaatataaagttcacttttattaatctttatca
cgtaccagcactcttcaatatacctgttatgtgagaacccaaatgctttc
atcttggacattacatttcaaagatttctatctgtatcctctaaatgatg
cagcatttcttctattatacttttattgaatcttagggactgattatttc
actattttcacaggtgacttccaaagacttacacctttcagtgggagcaa
atgaggtttataattgaacttcatagcttctgttccagttt
gaattcctgatctttccaagacttttatcatgaatgagtgttggatttgt
caaatgctttctcagcatctaacgagatgatcatgtggtttttgactttg
agtttgtttatatactggattacgttgattgatttccatatattgaacca
tccatccctgcatccctgggatgaaacctacttggtcaggatggatgatt
tttttgttgttgttgtgttcttggatttggttagcaagaactttattgag
tatttttgcatcgatattcataagagaaattggtctgaagttctctatct
ttgttgggtctttttgtggtttaggtatcagagtaattgtggcttcatag
aatgaattgggtagaataccttctgcttctattttgtggaatagtttgtg
aagaactgggattagatcttctttgaagttctgatagaactctgcactaa
acccatctgatcctgggcttttttttttttttttttttgttaggagacta
ttaatgactgattttatttctttaggggatataggactgtttagatcatt
aacctgatcttgatttaactttgatacctggtatctgtctagaaacttat
ccatttcatccaggttctccagttttgttgagtatagccttttgtaaaag
gatctgatggtgttttggatttcttcggtatctgttgttatgtctccctt
ttcatttttgattttgttaattaggatgctttccctgtgccctctagtga
gtctggctaagggtttatctatcttgttgattttctcaaagaccagctcc
tcgtttggttgattctttgatagttcttcttgtttctacttggttgattt
tgcccctgagtttgatattcctgccttctactctctggggtgaatttgct
tctttttgttctagagcttttaggtgtgttgtcaggatgctagtgtgtgc
tctctagtttttttggagcaatcagagtatgagtattattctaagaatgc
ttcttggtccctaagttgggttgttttggctacatttcagtaacctcaaa
ggcttattccttggtaatctctctgatcaaggactacggaagagtggcat
tcaacgaaagtgctcatatatgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_85298921_85300081
seq2: B6Ng01-060E12.b_93_1236

seq1  AGAGGCAGATAAAATGATGAATCAGAGATTTATTTATTTGACAGAATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGATAAAATGATGAATCAGAGATTTATTTATTTGACAGAATGGG  50

seq1  TCAGAAATAGGATACACCCAGCTCTCAGGAGTAAAGCTATTAGGAGCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATAGGATACACCCAGCTCTCAGGAGTAAAGCTATTAGGAGCAGC  100

seq1  CCAGGGAGAGAGAATTCATCAGTTCACTTCCTCAATGAGTTGAAAGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGAGAGAATTCATCAGTTCACTTCCTCAATGAGTTGAAAGTTGA  150

seq1  GTCCAGTGATATTCAGTGTAATAAGTTTACTGCAATAGAGTTCATTCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTGATATTCAGTGTAATAAGTTTACTGCAATAGAGTTCATTCCAG  200

seq1  AGTTCATGCAGCTCAGGCCAGGTCAGAAGACGCAGTTGAAGCCAGAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATGCAGCTCAGGCCAGGTCAGAAGACGCAGTTGAAGCCAGAGAAT  250

seq1  AGGAAGGAGCCAGAAATTAGAGCAGATAACCAGAGTTAGTTTGAGGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAGCCAGAAATTAGAGCAGATAACCAGAGTTAGTTTGAGGCAGT  300

seq1  GTAGAGCAATTTAGTCAGAAGCTGAGAAAAGCCAATCTGAATTAGTCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCAATTTAGTCAGAAGCTGAGAAAAGCCAATCTGAATTAGTCAGC  350

seq1  TTGGAGAGGAGTTTTGATCCAGAATAGCTAAGGTGAATCATTCAGTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAGGAGTTTTGATCCAGAATAGCTAAGGTGAATCATTCAGTCAAA  400

seq1  GTTCAGAAAGAACCAGAAAGGCTGAGCTTAATCAGTAACTAGCCTCCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAAAGAACCAGAAAGGCTGAGCTTAATCAGTAACTAGCCTCCAGG  450

seq1  AATACAATATCTGGCAAATATCAGGCAAATAAAAGATGCTTTTACAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAATATCTGGCAAATATCAGGCAAATAAAAGATGCTTTTACAAATT  500

seq1  CGTTTAAGAATGGGATTTGTTTTACAATTCTATTTATTCATGTTTTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTAAGAATGGGATTTGTTTTACAATTCTATTTATTCATGTTTTCTTA  550

seq1  TAAGTGCAGATTTAGTAGAGAACTGAGAGTAGGGTTATATCCTTTGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCAGATTTAGTAGAGAACTGAGAGTAGGGTTATATCCTTTGCTGT  600

seq1  TTGATAGTGAAGTTTACTTAGTAAAGAAGGATACTTTTTATGCTTACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGTGAAGTTTACTTAGTAAAGAAGGATACTTTTTATGCTTACTGT  650

seq1  GCATCAGACACCGTATGATCCATACATGTCCTTATATACTGCAGTAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGACACCGTATGATCCATACATGTCCTTATATACTGCAGTAAATG  700

seq1  AAAGAAACTTGTATTTGCTCTAATATTGTTTTCAATTTAGAGTAGTAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACTTGTATTTGCTCTAATATTGTTTTCAATTTAGAGTAGTAGTA  750

seq1  AATATATTCAACAATTTTGTGATAATTTATTGACTACCTATGTTGGGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTCAACAATTTTGTGATAATTTATTGACTACCTATGTTGGGCCA  800

seq1  GCCACTGTTTGTAACAGGTGTTTGTGAATTGGAAAAATGCCTAACATATA  850
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCCACTGTTTGTAACACGTGTTTGTGAATTGGAAAAATGCCTAACATATA  850

seq1  GCACATGCAGATAATAAGTGAAATATAAAGTTCACTTTTATTAATCTTTT  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCACATGCAGATAATAAGTGAAATATAAAGTTCACTTTTATTAATC-TTT  899

seq1  ATCACGTACCAGCCACTCTTCAATATACCTGTTATGTTGAGAACCCAAAT  950
      |||||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  ATCACGTACCAG-CACTCTTCAATATACCTGTTATG-TGAGAACCCAAAT  947

seq1  GCTTTCATCTTGGACATTACATTCCAAAGATTTCTATCTGTATCCCTCTA  1000
      ||||||||||||||||||||||| ||||||||||||||||||| ||||| 
seq2  GCTTTCATCTTGGACATTACATTTCAAAGATTTCTATCTGTAT-CCTCT-  995

seq1  AAATGATGCAGCATTTTCTTCTATTATTACTTTTTATTGATTCTTAGGAA  1050
      ||||||||||||| |||||||||||| ||| ||||||||| ||||||| |
seq2  AAATGATGCAGCA-TTTCTTCTATTA-TAC-TTTTATTGAATCTTAGGGA  1042

seq1  CCTGGATTATTTCACTATTTTTCACA-GTGACTTTCCCAAAGACCTATCA  1099
      |   ||||||||||||| |||||||| |||||||  |||||||| ||   
seq2  C--TGATTATTTCACTA-TTTTCACAGGTGACTT--CCAAAGACTTA--C  1085

seq1  ACTTTTCAGT-GGAGCAAATGTAGTTTTAATAATTGGACTTTCAATAGCT  1148
      || ||||||| ||||||||||  ||||  ||||||| ||||   ||||||
seq2  ACCTTTCAGTGGGAGCAAATGAGGTTT--ATAATTGAACTT--CATAGCT  1131

seq1  CTCTG-TCCAGTTT  1161
       |||| ||||||||
seq2  -TCTGTTCCAGTTT  1144