BAC Information

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BAC

Clone NameB6Ng01-060K23
ChromosomeX (Build37)
Map Location 144,073,689 - 144,222,312
singlet/doubletdoublet
Overlap geneLOC100039462, LOC666789, LOC434863
Upstream geneEG245663, Htr2c, Il13ra2, V1rb10, Lrch2
Downstream geneEG623995, EG624023, LOC666184, LOC100039511, LOC666812, LOC100039519, LOC434864, EG624096, LOC100039545, LOC666837, LOC100039553, LOC100034729, LOC666861, EG666864, LOC434866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060K23.bB6Ng01-060K23.g
ACCDH881589DH881590
length1,163938
definitionDH881589|Mus musculus domesticus DNA, BAC clone: B6Ng01-060K23, 5' end.DH881590|Mus musculus domesticus DNA, BAC clone: B6Ng01-060K23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,221,129 - 144,222,312)(144,073,689 - 144,074,311)
sequence
gaattcaggctcagtgaataaatggattttggacaggcttttgaccaaag
tattgtttcaagacaggttgccccttcactctgtagcttcatataaaaaa
ttaagaggtaaataaaggaagcaatgaacacacaaacacataaacaaatg
cagcacaatttcaactgaaaggtcagaaaatgttaatagggtaagtgttc
tttgctcccaaactctcaatgtaccaatgaaagatgcataaattacgtga
aatgtgtaacctgaaagtaagaatgcttttccccccaacaactggtccct
tgattttctgtgtacccagcttgatgtgttgttggctggattagaaatca
aaatgggaataattttcctggctttgttttctctctcaaaagaactggag
acatataacagctgttaaactctttccttagatgccttaggacctgaatt
agatgcccagattccctgcagaaaccatacatacatacaccatactcaag
gaccagtgaaatggctcagtgagtcactgtagttgctcacttactgggca
acctatgttggatccctgggaatggcattttgaaaataatgaagcaactc
cttcaccttatgcgctaatccacacatatatgcaccatagcatgccacat
gacatctgaatcaatcacaaaagaaacaatatatggaaataatatgtgga
gcatcgtgatttatatcagtattccctcatgtgggaaggcagagctcaga
gaatccctgggatattgtagtggacacctaccctggcctgactgctaagc
cccaggtccctattagagactgatctcagcagacatgaggaggattcctg
atgaacaagtgtcagtggtaacagtaagcgtccacatggaaatagagaac
ctaactgcactcctacacacacatgtgcacctgttcacatactaacagag
cacacagagatgtagccataccttcaccattatacacacacacacacaca
cagagattctggcagagaaggaagaaaattaggtattgcacagtgagcac
gtattattcctcactcttgctctgggatcatttgaactcaactgttgcct
ctgtttttcagagcagtcaaggtggtagtacctgattttctctgtggctc
agaatagactaca
gaattcactctgtagaccaggctggcctaaaactcagaaatccccctgcc
tctgcctcccaagtgctggcattaaaggcatgtgccaccactacccggct
tagtcttcatttctttacttgtaagttgtgagaagccgccctcacagtca
ccgttacaaggtggcgctgacatctgttgctcgtagtaaaatgtgcgcag
gcgtcagggtatcgttccattacctgagccctgcctctctcgtggcatta
actgactgatagtgggcagccaatcccagtggtgcacgtctccaaccgtt
ttttcgaagcctataaaagggaagggttttctgctctctgggtctcctct
cctgaagctgatcatctatctctcgagatgtattaaagctgtactgcaga
aggatccgagtggcctgcgtgtgttttgctggcgagatggtagcgtgggt
catctggttgctggaatcccgggaattaacatcgcaggcgttggggagaa
cccccagagatggagtggattcagaactgcagggaaaatgtgagttcaga
gagatatatctgatcgtgaacctcttatcccttttgatttcggttttcac
cctaagaaggggcggtagaagcactagtcttggttgctgtccatcgaggc
tggtgctgaaatttgctatccatcgaggctggtgctaaaattttctgtcc
atcgaggctggtgctaaaattttctgtccattgaggctggtgctaaaatt
ttctgtccatcgaggctggtgctgaaattcttattttgtccatcgaggct
ggtgttgaaatttgaggtgtggtcagtccaacgtagataagtggcagcac
cgaggtatcttctaagcctctcgtagataagggagcagagcaccgtgttt
acttttggctttgcttaaggagtaccataagtcggacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_144221129_144222312
seq2: B6Ng01-060K23.b_49_1211 (reverse)

seq1  TGTAGTCTATTCCTGAGCCACAGAGAAAATCAGTTACTACATACCTTTGA  50
      ||||||||||| ||||||||||||||||||||| ||||||  ||| ||||
seq2  TGTAGTCTATT-CTGAGCCACAGAGAAAATCAGGTACTAC-CACC-TTGA  47

seq1  CTGGCCTCTTGGAGAAACAGGAGCAAACAGTTTGAGGTCTAAAATGATCC  100
      |||  ||||  || ||||| |||  ||||| ||||| ||  |||||||||
seq2  CTG--CTCT--GAAAAACA-GAGGCAACAG-TTGAGTTC--AAATGATCC  89

seq1  CAGAGCAAGAGGTTGAGGAATAATTACGTGCTCACTGTGCAAATAACCTA  150
      |||||||||||  |||||||||| ||||||||||||||||||   |||||
seq2  CAGAGCAAGAG--TGAGGAATAA-TACGTGCTCACTGTGCAA--TACCTA  134

seq1  ATTTTTCTTTCCTTCTCTGCCAGAATCTCTTGTGTGTGTGTGTGTGTGTA  200
      |||||   ||||||||||||||||||||| ||||||||||||||||||||
seq2  ATTTT--CTTCCTTCTCTGCCAGAATCTC-TGTGTGTGTGTGTGTGTGTA  181

seq1  TAATGGTGAAGGTATGGCTACATCTCTGTGTGCTTCTGTTAGTATGTGAA  250
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAATGGTGAAGGTATGGCTACATCTCTGTGTGC-TCTGTTAGTATGTGAA  230

seq1  CAGGTGCACATGTGTGTGTAGGAGTGCAGTTAGGTTTCTCTATTTCCATG  300
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAGGTGCACATGTGTGTGTAGGAGTGCAGTTAGG-TTCTCTATTTCCATG  279

seq1  TGGACGCTTACTGTTACCACTGACACTTGTTCATCAGGAATCCTCCTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGCTTACTGTTACCACTGACACTTGTTCATCAGGAATCCTCCTCAT  329

seq1  GTCTGCTGAGATCAGTCTCTAATAGGGACCTGGGGCTTAGCAGTCAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTGAGATCAGTCTCTAATAGGGACCTGGGGCTTAGCAGTCAGGCC  379

seq1  AGGGTAGGTGTCCACTACAATATCCCAGGGATTCTCTGAGCTCTGCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAGGTGTCCACTACAATATCCCAGGGATTCTCTGAGCTCTGCCTTC  429

seq1  CCACATGAGGGAATACTGATATAAATCACGATGCTCCACATATTATTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGAGGGAATACTGATATAAATCACGATGCTCCACATATTATTTCC  479

seq1  ATATATTGTTTCTTTTGTGATTGATTCAGATGTCATGTGGCATGCTATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGTTTCTTTTGTGATTGATTCAGATGTCATGTGGCATGCTATGG  529

seq1  TGCATATATGTGTGGATTAGCGCATAAGGTGAAGGAGTTGCTTCATTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATATGTGTGGATTAGCGCATAAGGTGAAGGAGTTGCTTCATTATT  579

seq1  TTCAAAATGCCATTCCCAGGGATCCAACATAGGTTGCCCAGTAAGTGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATGCCATTCCCAGGGATCCAACATAGGTTGCCCAGTAAGTGAGC  629

seq1  AACTACAGTGACTCACTGAGCCATTTCACTGGTCCTTGAGTATGGTGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACAGTGACTCACTGAGCCATTTCACTGGTCCTTGAGTATGGTGTAT  679

seq1  GTATGTATGGTTTCTGCAGGGAATCTGGGCATCTAATTCAGGTCCTAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATGGTTTCTGCAGGGAATCTGGGCATCTAATTCAGGTCCTAAGG  729

seq1  CATCTAAGGAAAGAGTTTAACAGCTGTTATATGTCTCCAGTTCTTTTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAAGGAAAGAGTTTAACAGCTGTTATATGTCTCCAGTTCTTTTGAG  779

seq1  AGAGAAAACAAAGCCAGGAAAATTATTCCCATTTTGATTTCTAATCCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAACAAAGCCAGGAAAATTATTCCCATTTTGATTTCTAATCCAGC  829

seq1  CAACAACACATCAAGCTGGGTACACAGAAAATCAAGGGACCAGTTGTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACACATCAAGCTGGGTACACAGAAAATCAAGGGACCAGTTGTTGG  879

seq1  GGGGAAAAGCATTCTTACTTTCAGGTTACACATTTCACGTAATTTATGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAAGCATTCTTACTTTCAGGTTACACATTTCACGTAATTTATGCA  929

seq1  TCTTTCATTGGTACATTGAGAGTTTGGGAGCAAAGAACACTTACCCTATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCATTGGTACATTGAGAGTTTGGGAGCAAAGAACACTTACCCTATT  979

seq1  AACATTTTCTGACCTTTCAGTTGAAATTGTGCTGCATTTGTTTATGTGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTCTGACCTTTCAGTTGAAATTGTGCTGCATTTGTTTATGTGTT  1029

seq1  TGTGTGTTCATTGCTTCCTTTATTTACCTCTTAATTTTTTATATGAAGCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTCATTGCTTCCTTTATTTACCTCTTAATTTTTTATATGAAGCT  1079

seq1  ACAGAGTGAAGGGGCAACCTGTCTTGAAACAATACTTTGGTCAAAAGCCT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTGAAGGGGCAACCTGTCTTGAAACAATACTTTGGTCAAAAGCCT  1129

seq1  GTCCAAAATCCATTTATTCACTGAGCCTGAATTC  1184
      ||||||||||||||||||||||||||||||||||
seq2  GTCCAAAATCCATTTATTCACTGAGCCTGAATTC  1163

seq1: chrX_144073689_144074311
seq2: B6Ng01-060K23.g_71_693

seq1  GAATTCACTCTGTAGACCAGGCTGGCCTAAAACTCAGAAATCCCCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCCTAAAACTCAGAAATCCCCCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGCATTAAAGGCATGTGCCACCACTACCCGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGCATTAAAGGCATGTGCCACCACTACCCGGCT  100

seq1  TAGTCTTCATTTCTTTACTTGTAAGTTGTGAGAAGCCGCCCTCACAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTCATTTCTTTACTTGTAAGTTGTGAGAAGCCGCCCTCACAGTCA  150

seq1  CCGTTACAAGGTGGCGCTGACATCTGTTGCTCGTAGTAAAATGTGCGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTACAAGGTGGCGCTGACATCTGTTGCTCGTAGTAAAATGTGCGCAG  200

seq1  GCGTCAGGGTATCGTTCCATTACCTGAGCCCTGCCTCTCTCGTGGCATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCAGGGTATCGTTCCATTACCTGAGCCCTGCCTCTCTCGTGGCATTA  250

seq1  ACTGACTGATAGTGGGCAGCCAATCCCAGTGGTGCACGTCTCCAACCGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTGATAGTGGGCAGCCAATCCCAGTGGTGCACGTCTCCAACCGTT  300

seq1  TTTTCGAAGCCTATAAAAGGGAAGGGTTTTCTGCTCTCTGGGTCTCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGAAGCCTATAAAAGGGAAGGGTTTTCTGCTCTCTGGGTCTCCTCT  350

seq1  CCTGAAGCTGATCATCTATCTCTCGAGATGTATTAAAGCTGTACTGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGCTGATCATCTATCTCTCGAGATGTATTAAAGCTGTACTGCAGA  400

seq1  AGGATCCGAGTGGCCTGCGTGTGTTTTGCTGGCGAGATGGTAGCGTGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCGAGTGGCCTGCGTGTGTTTTGCTGGCGAGATGGTAGCGTGGGT  450

seq1  CATCTGGTTGCTGGAATCCCGGGAATTAACATCGCAGGCGTTGGGGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGTTGCTGGAATCCCGGGAATTAACATCGCAGGCGTTGGGGAGAA  500

seq1  CCCCCAGAGATGGAGTGGATTCAGAACTGCAGGGAAAATGTGAGTTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGAGATGGAGTGGATTCAGAACTGCAGGGAAAATGTGAGTTCAGA  550

seq1  GAGATATATCTGATCGTGAACCTCTTATCCCTTTTGATTTCGGTTTTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATATCTGATCGTGAACCTCTTATCCCTTTTGATTTCGGTTTTCAC  600

seq1  CCTAAGAAGGGGCGGTAGAAGCA  623
      |||||||||||||||||||||||
seq2  CCTAAGAAGGGGCGGTAGAAGCA  623