BAC Information

Click to search

BAC

Clone NameB6Ng01-060N18
Chromosome16 (Build37)X (Build37)
Map Location 45,373,786 - 45,374,782100,165,102 - 100,165,648
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCcdc52, Wdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla
Downstream geneCd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060N18.bB6Ng01-060N18.g
ACCDH881714DH881715
length996932
definitionDH881714|Mus musculus domesticus DNA, BAC clone: B6Ng01-060N18, 5' end.DH881715|Mus musculus domesticus DNA, BAC clone: B6Ng01-060N18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,373,786 - 45,374,782)(100,165,102 - 100,165,648)
sequence
gaattcagatattatttcctggagaaaatctttaaaaggtttaaaacaac
agcaaaaccacagctttctgaatgtccaagacaccaaaagtgtttccgta
cagtaataactaatttgccactttataattagaaaacgtagctgtactat
gcctcttgagtttgctgttgttgattataggtcaaaatcatcatccctct
tgcagacaggctgtgtgaacagcaatctggactctgcctgattaagacaa
caaagccctcaatgtaggttgactgcttttattaccattatatcccagtt
cttttcaatttccttctgtagccaatgagtcttaatctcatagctgagtg
gggattatgtcaagaaacctaggtttgatgaaacttgcctcatattgtca
ccaggtcagttgatttaagggcaaaccttaattcttaattcctatcagct
atacttaatggctcatagtgttacatttgtaattctataaaatcattctg
aaaactgaatcatgatatactgactgaacatgcttaatataaactgttgc
aaaaatcgaaacattttgactaactacacaatgtcacatggggagtgagt
catgtgacctcatatgatggaccacagtcttggtggcaacacactaaaac
tgtcctgtgactgctgatgagatggctcagcagtcaaatgctcttgcttc
acaagccttgagatctgatccctcagaaggcacaatgggaggggagaatc
aagtctcaaatactgttctctgaccggcacatgtgttatgtgtgctgtgg
catgagtatgaacacttgtttgcatgtgtatgcattcctgcatacataca
aacatcacatatccattaggcaattcacaggtaataaagattttgaaaat
aaaatagtgtacaaaattccatttagcatatatacatatatatgtatata
tatacatatatatgtatatatatacatatatatgtgtgtgtgtgtg
gaattcctgatctttccaagacttttatcatgaatgggtgttggattttg
tccaatgctttctccgcatctaaggagatgatcatgtggtttttggcttt
gagtttgtttatatgctggattacattgatgtatttctatatattgaacc
atccctgcatccctggaatgaaacctacttggtcaggatgggtcattgtt
ttaatgtgttcttagattcggatagcgataattttattgagtatttttgc
atcgatattcataagggaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtaccagagtaatgtggcttcatagaatgagttgg
gtagagtaccttctacttctattttgtggattagtttgtgcaggactaga
attagatcttctttgaaggtctgatagaactctgcactaaacccgtctgg
tcctgggctttttttggttgggagactattaatgactgcttctatgtctt
taggggatttgggactgtttagatcgttaacttgatcctggtttaacttt
ggtacatggtatctgtctagaaatttgtccattttgtccaggttttccag
ttttgttgagtatagccttttgtagaaggattagatggtgttttggattt
cttcaggatctgttgttatatttcccttttaatttctgattttgttaatt
aggatgctgtccctgtgccctctagtgagtctggctaaaggtttatctat
ctttttgattttctcaaagaaccagctcctggtttggttgattctttgaa
tagttattcttgtttccactttgttgattttacccctgagtgtgattact
tcctgtcgtctactcctcttgggtgatttgcttccttttttctagagctt
ttaggtgtgttgtcagctgctagtgtgtgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_45373786_45374782
seq2: B6Ng01-060N18.b_47_1042

seq1  GAATTCAGATATTATTTCCTGGAGAAAATCTTTAAAAGGTTTAAAACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATATTATTTCCTGGAGAAAATCTTTAAAAGGTTTAAAACAAC  50

seq1  AGCAAAACCACAGCTTTCTGAATGTCCAAGACACCAAAAGTGTTTCCGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAACCACAGCTTTCTGAATGTCCAAGACACCAAAAGTGTTTCCGTA  100

seq1  CAGTAATAACTAATTTGCCACTTTATAATTAGAAAACGTAGCTGTACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATAACTAATTTGCCACTTTATAATTAGAAAACGTAGCTGTACTAT  150

seq1  GCCTCTTGAGTTTGCTGTTGTTGATTATAGGTCAAAATCATCATCCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTGAGTTTGCTGTTGTTGATTATAGGTCAAAATCATCATCCCTCT  200

seq1  TGCAGACAGGCTGTGTGAACAGCAATCTGGACTCTGCCTGATTAAGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACAGGCTGTGTGAACAGCAATCTGGACTCTGCCTGATTAAGACAA  250

seq1  CAAAGCCCTCAATGTAGGTTGACTGCTTTTATTACCATTATATCCCAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCCTCAATGTAGGTTGACTGCTTTTATTACCATTATATCCCAGTT  300

seq1  CTTTTCAATTTCCTTCTGTAGCCAATGAGTCTTAATCTCATAGCTGAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAATTTCCTTCTGTAGCCAATGAGTCTTAATCTCATAGCTGAGTG  350

seq1  GGGATTATGTCAAGAAACCTAGGTTTGATGAAACTTGCCTCATATTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTATGTCAAGAAACCTAGGTTTGATGAAACTTGCCTCATATTGTCA  400

seq1  CCAGGTCAGTTGATTTAAGGGCAAACCTTAATTCTTAATTCCTATCAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCAGTTGATTTAAGGGCAAACCTTAATTCTTAATTCCTATCAGCT  450

seq1  ATACTTAATGGCTCATAGTGTTACATTTGTAATTCTATAAAATCATTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAATGGCTCATAGTGTTACATTTGTAATTCTATAAAATCATTCTG  500

seq1  AAAACTGAATCATGATATACTGACTGAACATGCTTAATATAAACTGTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGAATCATGATATACTGACTGAACATGCTTAATATAAACTGTTGC  550

seq1  AAAAATCGAAACATTTTGACTAACTACACAATGTCACATGGGGAGTGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCGAAACATTTTGACTAACTACACAATGTCACATGGGGAGTGAGT  600

seq1  CATGTGACCTCATATGATGGACCACAGTCTTGGTGGCAACACACTAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGACCTCATATGATGGACCACAGTCTTGGTGGCAACACACTAAAAC  650

seq1  TGTCCTGTGACTGCTGATGAGATGGCTCAGCAGTCAAATGCTCTTGCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGTGACTGCTGATGAGATGGCTCAGCAGTCAAATGCTCTTGCTTC  700

seq1  ACAAGCCTTGAGATCTGATCCCTCAGAAGGCACAATGGGAGGGGAGAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCTTGAGATCTGATCCCTCAGAAGGCACAATGGGAGGGGAGAATC  750

seq1  AAGTCTCAAATACTGTTCTCTGACCGGCACATGTGTTATGTGTGCTGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCAAATACTGTTCTCTGACCGGCACATGTGTTATGTGTGCTGTGG  800

seq1  CATGAGTATGAACACTTGTTTGCATGTGTATGCATTCCTGCATACATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTATGAACACTTGTTTGCATGTGTATGCATTCCTGCATACATACA  850

seq1  AACATCACATATCCATTAGGCAATTCACAGGTAATAAAGATTTTGAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCACATATCCATTAGGCAATTCACAGGTAATAAAGATTTTGAAAAT  900

seq1  AAAAATAGTGTACAAAATTCCATTTAGCATATATACATATATATGTATAT  950
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAATAGTGTACAAAATTCCATTTAGCATATATACATATATATGTATAT  949

seq1  ATATACATATATATGTATATATATACATATATATGTGTGTGTGTGTG  997
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATATATATGTATATATATACATATATATGTGTGTGTGTGTG  996

seq1: chrX_100165102_100165648
seq2: B6Ng01-060N18.g_68_613 (reverse)

seq1  TTAAACCAGGATCAAATTAACGATCTAAACAGTCCCATATCCCCTACAGA  50
      ||||||||||||||| ||||||||||||||||||||| |||||||| |||
seq2  TTAAACCAGGATCAAGTTAACGATCTAAACAGTCCCAAATCCCCTAAAGA  50

seq1  AATAGAAGCAGTCATTAATTGTCTCCCAACCACAAAAAGCCCAGGACCTG  100
       |||||||||||||||||| |||||||||||| ||||||||||||||| |
seq2  CATAGAAGCAGTCATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAG  100

seq1  ATAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCA  150
      |  ||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCTA  150

seq1  GTTCTGCACAAACTATTCCACAAAATAGAAGTAGAAGGTACTCTACCCAA  200
      || |||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTCCTGCACAAACTAATCCACAAAATAGAAGTAGAAGGTACTCTACCCAA  200

seq1  CTCATTCTATGAAGCCACAATTACTCTGATACCTAAACCACAAAAAGATC  250
      |||||||||||||||||| ||||||||| ||||||||||||| |||||||
seq2  CTCATTCTATGAAGCCAC-ATTACTCTGGTACCTAAACCACAGAAAGATC  249

seq1  CAACAAAGATAGAGAACTTCAGAACAATTTCCCTTATGAATATCAATGCA  300
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  CAACAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATCGATGCA  299

seq1  AAAATACTCAATAAAATTCTCGATATCTGAATCGAACAACACACTAAAAC  350
      |||||||||||||||||| ||| |||| ||||| || |||||| ||||||
seq2  AAAATACTCAATAAAATTATCGCTATCCGAATCTAAGAACACATTAAAAC  349

seq1  AATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGT  400
      ||| | ||||||||||||||||||||| ||||||||||||||||||||||
seq2  AATGACCCATCCTGACCAAGTAGGTTTCATTCCAGGGATGCAGGGATGGT  399

seq1  TTAATATATGGAAATCCATCAACGTAATCCAGTATATAAACAAACTCAAA  450
      | ||||||| ||||| |||||| ||||||||| |||||||||||||||||
seq2  TCAATATATAGAAATACATCAATGTAATCCAGCATATAAACAAACTCAAA  449

seq1  GCCAAAAGCCACATGATCATCTCGTTAGATGTGGAGAAAGCATTTGACAA  500
      ||||||| ||||||||||||||| ||||||| |||||||||||| |||||
seq2  GCCAAAAACCACATGATCATCTCCTTAGATGCGGAGAAAGCATTGGACAA  499

seq1  AATCCAACACCCATTCATGATAAAAGTCTTGGAAAGATCAGGAATTC  547
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAACACCCATTCATGATAAAAGTCTTGGAAAGATCAGGAATTC  546