BAC Information

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BAC

Clone NameB6Ng01-061G04
ChromosomeX (Build37)
Map Location 163,458,026 - 163,610,759
singlet/doubletdoublet
Overlap geneLOC667791, EG667794, LOC100040850, LOC627268
Upstream geneGemin8, Gpm6b, Ofd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660
Downstream geneTmsb4x, Tlr8, Tlr7, Prps2, EG627311, Frmpd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061G04.bB6Ng01-061G04.g
ACCDH882079DH882080
length1,2091,116
definitionDH882079|Mus musculus domesticus DNA, BAC clone: B6Ng01-061G04, 5' end.DH882080|Mus musculus domesticus DNA, BAC clone: B6Ng01-061G04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,458,026 - 163,459,246)(163,609,625 - 163,610,759)
sequence
gaattctaagatctacttctgtgctcattcctgggatttttgctagcttc
acagaaaacactggggcagaaacaagatgacactatcacctttcaaaatg
aattggtaaagatttttacaagacttgacttgtttgtaagtggccttctc
ctatgacagtggtgactcataggatgtattgtagccaagatacatcaaga
gcaagaacataaagacaacattgggtattcacttcctaagggcagcagaa
acttgcctgggattttattctgggaggccttgggggtatactccaggagt
taaagctagagaagtgctaaaggccgaggctttgaagatgtctcctcacc
ccaggaaaaggcagccatggagaaacttacttataaacgtgagttcatgg
cactatggggctagagaactggttgaatggttaagggcacttgaagctct
tccaaaggactcgaattcaactcccagcacctacatctggtggctcacag
ccacttctaactccagcaccagggaatttgacatcatcttttagcctcta
taagcacctgcacacttttggcatgcctgacataggcacatgcacataca
catacacataaataaaataaactttttttaaaatgggaaatcaaggtagt
actgaagtccagaagaccggaatttggaaaggagcaggaaaaaattctac
ttgttcataagtttgcctagattctttaaaaaaagaaaatattaaaaaaa
ttcttgtcttattcgatgtatatggatgtttttgcatacatggatatctt
tgcactacataattgcctggtacccatgaagaccagaagaatactttaga
ttctctggaactggagttacaggtggctctgagctaccttgtgggtgctg
gccagtggaaaccaggtggccaaaagagcagccatgcactccatcactgt
gccacctctcattcctgcatctttgtattacttatttcgtgtgtgtatgt
atgtgtgcacacactcatgccaagtgtagtaatagagttcgaggaacact
tgtaagagtcagctgtctctttctttcaatgtagaatccaaacgcacatc
atcaagcttagaaaacagtgaagtgctactgaagctatcttgctggcctg
tggagcgtgttttacaaaggcctgacctatatctgagctaggagtgctta
aaaaggaat
gaattcagcataaaaagaaaggaaagaaaagaaaagaaaagaaaagaaaa
gaaaagaaaagaaaagaaaagaaaagaaaaactgttatgaaaccaaacct
gaattacaatgttaggcacacaattatctgggccaaagcagatgtctcag
acaggggttactctagccaagccctgagctggaatgatcaatttcctaga
ttgtagaccacatggaatatgctggagtaaagatgggcaccagtgtctga
aacctgggaaggtgagaagtgaagtggacaagggtgacttatcactgcac
aaagagtttgaaagctttttctctccccaccagatttcaaacagagactc
ttgcttgctaatcttagctgcaagggtgactcagcccatgtctgcaaatg
aaaggcttcgtctttggctgtgaaataaaaataggaactagtgtgtgcca
tatcaggacttttcctgggtaaaggacagccatggcccccttagccatcc
taagagcaggagttgttgtgaatgagagggatgggttagagaatccattt
gcagaaagtggacccacgtagctactccttgcaagcattccttctaatgc
tctttgcattctgcacacttggtagcttgactcaagtcagctggcaccag
cattgtttgccatggggctttgtcctggggactcagagcacagctcagga
gggaaaaataagtcctcatatggtgctatgactgatctttgggtcactgg
atgccctacaccttttagcaaactcagttttgtcttagaggaaagcgtca
aaacaacaacaagaaaaaccttatctctgaatgcatgaagacttatagtc
cccctaactcttggggaagtcaaaccagtgctgtcaggacagggcctgga
gtaacttcattgcaatttgagctttgtaccatgggtggggattcagtctg
acagagggagatagagtctttgctcttcaagatttctttctacaataaag
actttccaaattatcctgtcacattggcacgtgattttccttgctatgct
caggagatcatatggaatgtctaaactctcttataacccgaaggtggggt
ttttttgtttgttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_163458026_163459246
seq2: B6Ng01-061G04.b_45_1253

seq1  GAATTCTAAGATCTACTTCTGTGCTCATTCCTGGGATTTTTGCTAGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGATCTACTTCTGTGCTCATTCCTGGGATTTTTGCTAGCTTC  50

seq1  ACAGAAAACACTGGGGCAGAAACAAGATGACACTATCACCTTTCAAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAACACTGGGGCAGAAACAAGATGACACTATCACCTTTCAAAATG  100

seq1  AATTGGTAAAGATTTTTACAAGACTTGACTTGTTTGTAAGTGGCCTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTAAAGATTTTTACAAGACTTGACTTGTTTGTAAGTGGCCTTCTC  150

seq1  CTATGACAGTGGTGACTCATAGGATGTATTGTAGCCAAGATACATCAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACAGTGGTGACTCATAGGATGTATTGTAGCCAAGATACATCAAGA  200

seq1  GCAAGAACATAAAGACAACATTGGGTATTCACTTCCTAAGGGCAGCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAACATAAAGACAACATTGGGTATTCACTTCCTAAGGGCAGCAGAA  250

seq1  ACTTGCCTGGGATTTTATTCTGGGAGGCCTTGGGGGTATACTCCAGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCTGGGATTTTATTCTGGGAGGCCTTGGGGGTATACTCCAGGAGT  300

seq1  TAAAGCTAGAGAAGTGCTAAAGGCCGAGGCTTTGAAGATGTCTCCTCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTAGAGAAGTGCTAAAGGCCGAGGCTTTGAAGATGTCTCCTCACC  350

seq1  CCAGGAAAAGGCAGCCATGGAGAAACTTACTTATAAACGTGAGTTCATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAAAGGCAGCCATGGAGAAACTTACTTATAAACGTGAGTTCATGG  400

seq1  CACTATGGGGCTAGAGAACTGGTTGAATGGTTAAGGGCACTTGAAGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGGGGCTAGAGAACTGGTTGAATGGTTAAGGGCACTTGAAGCTCT  450

seq1  TCCAAAGGACTCGAATTCAACTCCCAGCACCTACATCTGGTGGCTCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGGACTCGAATTCAACTCCCAGCACCTACATCTGGTGGCTCACAG  500

seq1  CCACTTCTAACTCCAGCACCAGGGAATTTGACATCATCTTTTAGCCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCTAACTCCAGCACCAGGGAATTTGACATCATCTTTTAGCCTCTA  550

seq1  TAAGCACCTGCACACTTTTGGCATGCCTGACATAGGCACATGCACATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACCTGCACACTTTTGGCATGCCTGACATAGGCACATGCACATACA  600

seq1  CATACACATAAATAAAATAAACTTTTTTTAAAATGGGAAATCAAGGTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACATAAATAAAATAAACTTTTTTTAAAATGGGAAATCAAGGTAGT  650

seq1  ACTGAAGTCCAGAAGACCGGAATTTGGAAAGGAGCAGGAAAAAATTCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGTCCAGAAGACCGGAATTTGGAAAGGAGCAGGAAAAAATTCTAC  700

seq1  TTGTTCATAAGTTTGCCTAGATTCTTTAAAAAAAGAAAATATTAAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATAAGTTTGCCTAGATTCTTTAAAAAAAGAAAATATTAAAAAAA  750

seq1  TTCTTGTCTTATTCGATGTATATGGATGTTTTTGCATACATGGATATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTCTTATTCGATGTATATGGATGTTTTTGCATACATGGATATCTT  800

seq1  TGCACTACATAATTGCCTGGTACCCATGAAGACCAGAAGAATACTTTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTACATAATTGCCTGGTACCCATGAAGACCAGAAGAATACTTTAGA  850

seq1  TTCCCTGGAACTGGAGTTACAGGTGGCTCTGAGCTACCTTGTGGGTGCTG  900
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGAACTGGAGTTACAGGTGGCTCTGAGCTACCTTGTGGGTGCTG  900

seq1  GCCAGTGGAAACCAGGTGGCCCAAAAGAGCAGCCAATGCACTCCATCACT  950
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  GCCAGTGGAAACCAGGTGG-CCAAAAGAGCAGCC-ATGCACTCCATCACT  948

seq1  GTGCCACCTCTCCATCCCTGCATCTTTGTATTTACTTATTTTCGTGTGTG  1000
      ||||||||||| ||| |||||||||||||| ||||||| |||||||||||
seq2  GTGCCACCTCT-CATTCCTGCATCTTTGTA-TTACTTA-TTTCGTGTGTG  995

seq1  TATGTATGTGTGCACACACTCATGCCAAAGTTGTAGGTATAGAGTTCAGA  1050
      ||||||||||||||||||||||||||||   |||||  ||||||||| ||
seq2  TATGTATGTGTGCACACACTCATGCCAA--GTGTAGTAATAGAGTTC-GA  1042

seq1  GGACAACTTGTAGAAGTCAGCTGTCTCTTTC-TTCCATGTAGAAACCAAA  1099
      |||  |||||||  ||||||||||||||||| ||| |||||||| |||||
seq2  GGAACACTTGTAAGAGTCAGCTGTCTCTTTCTTTCAATGTAGAATCCAAA  1092

seq1  CGCACATCATCAGGCTT-GACAACAAGTGAAGTGCCTACTG-AGCTATCT  1147
      |||||||||||| |||| || ||| ||||||||| |||||| ||||||||
seq2  CGCACATCATCAAGCTTAGAAAAC-AGTGAAGTG-CTACTGAAGCTATCT  1140

seq1  TGCTGGCCTGT-GAGCGTTGTTTTAACAAGGCCTGACACTATTACTGAGG  1196
      ||||||||||| ||||| |||||||  |||||||||| ||||  |||| |
seq2  TGCTGGCCTGTGGAGCG-TGTTTTACAAAGGCCTGAC-CTATATCTGA-G  1187

seq1  CTATGGAGTGCTCATAAAAAGGAAT  1221
      ||| ||||||||  |||||||||||
seq2  CTA-GGAGTGCT--TAAAAAGGAAT  1209

seq1: chrX_163609625_163610759
seq2: B6Ng01-061G04.g_71_1186 (reverse)

seq1  AAAAAAAAACAAAAAAAACCCCAACCTTCTGGGTTATTGATGGGAGGTTT  50
      ||||| |||||||||||  ||| |||||| |||||||  | | || ||||
seq2  AAAAACAAACAAAAAAA--CCCCACCTTC-GGGTTAT--AAGAGA-GTTT  44

seq1  AGGACATTCCATATGTACTTCCTGAGCATAGCAAGGAGAATACAACTGTG  100
      | ||||||||||||| |  |||||||||||||||||| ||| ||   |||
seq2  A-GACATTCCATATG-ATCTCCTGAGCATAGCAAGGAAAAT-CA--CGTG  89

seq1  CCAATGTGAACAGG-TATTTTGTGAAAGGTCTTTATTGTAGAAAGAATAC  149
      |||||||| ||||| || |||| |||| ||||||||||||||||||| | 
seq2  CCAATGTG-ACAGGATAATTTG-GAAA-GTCTTTATTGTAGAAAGAA-AT  135

seq1  CTTG-AGAGCCAAAGACTCTATCTCCCAACTGGTCAGACTGAATCCCCAC  198
      |||| |||| |||||||||||||||||  || ||||||||||||||||||
seq2  CTTGAAGAG-CAAAGACTCTATCTCCC-TCT-GTCAGACTGAATCCCCAC  182

seq1  CCATGGTACAAAGGCTCAAATTGCAATGAAGTTACTCCAGGCCCTTGTCC  248
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  CCATGGTACAAA-GCTCAAATTGCAATGAAGTTACTCCAGGCCC-TGTCC  230

seq1  TGACAGCACTGGTTTGACCTCCCCAAGAGTTAGGGGGACTATAAGTCTTC  298
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGACAGCACTGGTTTGACTTCCCCAAGAGTTAGGGGGACTATAAGTCTTC  280

seq1  ATGCATTCAGAGATAAGGTTTTTCTTGTTGTTGTTGTTGACGCTTTCCTC  348
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATGCATTCAGAGATAAGGTTTTTCTTGTTGTTGTT-TTGACGCTTTCCTC  329

seq1  TAAGACAAAACTGAGTTTGCTAAAAGGTGTAGGGCATCCAGTGACCCAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAAAACTGAGTTTGCTAAAAGGTGTAGGGCATCCAGTGACCCAAA  379

seq1  GATCAGTCATAGCACCATATGAGGACTTATTTTTCCCTCCTGAGCTGTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTCATAGCACCATATGAGGACTTATTTTTCCCTCCTGAGCTGTGC  429

seq1  TCTGAGTCCCCAGGACAAAGCCCCATGGCAAACAATGCTGGTGCCAGCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTCCCCAGGACAAAGCCCCATGGCAAACAATGCTGGTGCCAGCTG  479

seq1  ACTTGAGTCAAGCTACCAAGTGTGCAGAATGCAAAGAGCATTAGAAGGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGTCAAGCTACCAAGTGTGCAGAATGCAAAGAGCATTAGAAGGAA  529

seq1  TGCTTGCAAGGAGTAGCTACGTGGGTCCACTTTCTGCAAATGGATTCTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCAAGGAGTAGCTACGTGGGTCCACTTTCTGCAAATGGATTCTCT  579

seq1  AACCCATCCCTCTCATTCACAACAACTCCTGCTCTTAGGATGGCTAAGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATCCCTCTCATTCACAACAACTCCTGCTCTTAGGATGGCTAAGGG  629

seq1  GGCCATGGCTGTCCTTTACCCAGGAAAAGTCCTGATATGGCACACACTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGGCTGTCCTTTACCCAGGAAAAGTCCTGATATGGCACACACTAG  679

seq1  TTCCTATTTTTATTTCACAGCCAAAGACGAAGCCTTTCATTTGCAGACAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATTTTTATTTCACAGCCAAAGACGAAGCCTTTCATTTGCAGACAT  729

seq1  GGGCTGAGTCACCCTTGCAGCTAAGATTAGCAAGCAAGAGTCTCTGTTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAGTCACCCTTGCAGCTAAGATTAGCAAGCAAGAGTCTCTGTTTG  779

seq1  AAATCTGGTGGGGAGAGAAAAAGCTTTCAAACTCTTTGTGCAGTGATAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGGTGGGGAGAGAAAAAGCTTTCAAACTCTTTGTGCAGTGATAAG  829

seq1  TCACCCTTGTCCACTTCACTTCTCACCTTCCCAGGTTTCAGACACTGGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTTGTCCACTTCACTTCTCACCTTCCCAGGTTTCAGACACTGGTG  879

seq1  CCCATCTTTACTCCAGCATATTCCATGTGGTCTACAATCTAGGAAATTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTTTACTCCAGCATATTCCATGTGGTCTACAATCTAGGAAATTGA  929

seq1  TCATTCCAGCTCAGGGCTTGGCTAGAGTAACCCCTGTCTGAGACATCTGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCAGCTCAGGGCTTGGCTAGAGTAACCCCTGTCTGAGACATCTGC  979

seq1  TTTGGCCCAGATAATTGTGTGCCTAACATTGTAATTCAGGTTTGGTTTCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCCAGATAATTGTGTGCCTAACATTGTAATTCAGGTTTGGTTTCA  1029

seq1  TAACAGTTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTT  1079

seq1  TCTTTTCTTTTCTTTCCTTTCTTTTTATGCTGAATTC  1135
      |||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTTCTTTCCTTTCTTTTTATGCTGAATTC  1116