BAC Information

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BAC

Clone NameB6Ng01-061H12
ChromosomeX (Build37)
Map Location 127,666,300 - 127,803,378
singlet/doubletdoublet
Overlap geneLOC665799
Upstream geneDiap2, LOC100040092, LOC665773
Downstream geneLOC670449, LOC245600, EG631264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061H12.bB6Ng01-061H12.g
ACCDH882138DH882139
length1,1351,116
definitionDH882138|Mus musculus domesticus DNA, BAC clone: B6Ng01-061H12, 5' end.DH882139|Mus musculus domesticus DNA, BAC clone: B6Ng01-061H12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,802,230 - 127,803,378)(127,666,300 - 127,667,433)
sequence
gaattcaccttgtccttacatttatatcttagatagttaatatgtatttc
tgcaggtaaatttcatttatgcaaattttctccccagacaaatatgaaac
acaaaagaggtaggtaaaaggtttggaggagagtaaaatgtcaccccact
cttttagaacttatataacaatataaacctcaaaaagagagaatcatcac
aaatggcctgataaaaaatttaaaaatacatagagacagtgatcctgaat
gggtgagtaccatacctgttttgaaaattaaatctatattgattagcaag
gtatagactataaattttagaaactgtggagcagaaacaattatatcagt
gaatatttttagcttattgagaaattgaaactctagaagaatatcaattg
gtcttgttggcttacaaatattattgttaaactcaaaatgctagtaatca
tcttataacaggctcccagaacttaacactatatgttagaggcaccaaag
catcattctgtctaagaacactgcaagtaggccctaacacctggaaaaat
gaagaaagaacaaagacctaatccatcaccatccatactttggggaatgt
tcctaaatgtattaaccttgttttagcttctgtagctccatttattgcta
acttttcttgctaattgaagtttgtcaaccagggtatgggttttcttcat
taaaacaaacaaacaaacgaacaaacaaaaaaccagagatcagtgaagct
catgactacactatttggacaagatctttgtgaagtctgtcagctagcaa
ataaaaactttctattggctttaaaagtcgatgtgttctctgaaggagtt
ctctaaaatcaaactattttcagcctctctacaggtactgtgatgatttg
tgtgggtagttcatttgacaggatctggaatcacccaggagacaagtctc
cagaaatacctatgaggactatctaatagattactgagatgacagacaca
tcctaaaggaagacatcaaatccctgggtgtgtcctaaactacataaaaa
agcatatgctaaatgagagtgccatccactattgtcttcttcctggatgt
agatgaagatgactgctgatcagtcctgctctgtt
gaattctctttattcttctttgaatgcaactttcatagttaagacaatta
ctgtactcttctcatggaaaaatatttttaacaatactaattaaatgtct
tttatttctcagagctttattcagattatctatgcactgtcaagctgatt
ttggtagattggtagtttttctgagtatttttacttcatctgtatttatg
ttcttggatttcctaggagaagagttatgcacattgtaagctgcaatatg
ggtgctgagaattgaattcaagtcttcttaatgaatacccagtaccacct
ttccagatcattatttctaattttttataatcatttctaatttttaatat
ttactgctctcctggttgtttgttgcttttttttttttcatcacctaaaa
caagctagagttatctggatagaggaaagccaattgagaatatacctcta
tcagatgccaaatcagtagggcattttcttgactaatgtgggagaactca
gcctactgtgggtggtgccacatgaaggcaggtggtcgtgggttgtataa
gcaagcagcctactcaagcgatggggaacaacccagtaagcagcactctt
atgtgtcctgggttccagtttcttccttcggctctccttctgacttcctt
tgcagaaagactgtaaactgcatggagaaataaccccttccttacacaag
tcactttttgccatggtccttatcactgcaacagaaaccaagctaagaca
gctaccaaataataagttccaagagggaaagaaaaaataattcctattat
tttatgacctagttgccattgtttcaaagagtgatatagcacatatttct
cattattttcatgtgaatcaaattattgtattcccagtcatataaaggat
agcatattcaattatttgcaatgctttgaaagtataacaacgtaaaaaca
gaattctaggcctttaggctcaggctcggaatgtggcctttgtaaaggta
tgctatcataaaacaatagcgacatcctcatcactcgcttctggatcaaa
gatgctcattcaagaagtcaccagacctgcatgcaatgtgctattgtagg
gctcttagagctgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_127802230_127803378
seq2: B6Ng01-061H12.b_44_1178 (reverse)

seq1  AACAGGAGCAGGAACTTGAAACAGCCAGTCATCTTCTATCTACATCCAGG  50
      |||| ||||||| |||   | ||| ||||||||||| |||||||||||||
seq2  AACA-GAGCAGG-ACT--GATCAG-CAGTCATCTTC-ATCTACATCCAGG  44

seq1  AAGAAGACAATAGTGGATGGCACTCTTCATTTAGCATATGCTTTTTTATG  100
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAGAAGACAATAGTGGATGGCACTC-TCATTTAGCATATGCTTTTTTATG  93

seq1  TAGTTTAGGACACAACCCAGGGATTTTGATGTCTTCCTTTAGGATGTGTC  150
      ||||||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  TAGTTTAGGACAC-ACCCAGGGA-TTTGATGTCTTCCTTTAGGATGTGTC  141

seq1  TTGTCATCTCAGTTAATCTAATTAAGATAGTCCCTCATAGGTATTTCTGG  200
       ||||||||||| |||||||  | ||||||| ||||||||||||||||||
seq2  -TGTCATCTCAG-TAATCTA--TTAGATAGT-CCTCATAGGTATTTCTGG  186

seq1  AGACTTGTCTCCTGGGTGATTCCAGATCCTGTCAAATGAACTACCCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGTCTCCTGGGTGATTCCAGATCCTGTCAAATGAACTACCCACAC  236

seq1  AAATCATCACAGTACCTGTAGAGAGGCTGAAAATAGTTTGATTTTAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAATCATCACAGTACCTGTAGAGAGGCTGAAAATAGTTTGATTTTAGAGA  286

seq1  ACTCCTTCAGAGAACACATCGACTTTTAAAGCCAATAGAAAGTTTTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTCAGAGAACACATCGACTTTTAAAGCCAATAGAAAGTTTTTATT  336

seq1  TGCTAGCTGACAGACTTCACAAAGATCTTGTCCAAATAGTGTAGTCATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCTGACAGACTTCACAAAGATCTTGTCCAAATAGTGTAGTCATGA  386

seq1  GCTTCACTGATCTCTGGTTTTTTGTTTGTTCGTTTGTTTGTTTGTTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACTGATCTCTGGTTTTTTGTTTGTTCGTTTGTTTGTTTGTTTTAA  436

seq1  TGAAGAAAACCCATACCCTGGTTGACAAACTTCAATTAGCAAGAAAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAACCCATACCCTGGTTGACAAACTTCAATTAGCAAGAAAAGTT  486

seq1  AGCAATAAATGGAGCTACAGAAGCTAAAACAAGGTTAATACATTTAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAAATGGAGCTACAGAAGCTAAAACAAGGTTAATACATTTAGGAA  536

seq1  CATTCCCCAAAGTATGGATGGTGATGGATTAGGTCTTTGTTCTTTCTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCCAAAGTATGGATGGTGATGGATTAGGTCTTTGTTCTTTCTTCA  586

seq1  TTTTTCCAGGTGTTAGGGCCTACTTGCAGTGTTCTTAGACAGAATGATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCAGGTGTTAGGGCCTACTTGCAGTGTTCTTAGACAGAATGATGC  636

seq1  TTTGGTGCCTCTAACATATAGTGTTAAGTTCTGGGAGCCTGTTATAAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGCCTCTAACATATAGTGTTAAGTTCTGGGAGCCTGTTATAAGAT  686

seq1  GATTACTAGCATTTTGAGTTTAACAATAATATTTGTAAGCCAACAAGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTAGCATTTTGAGTTTAACAATAATATTTGTAAGCCAACAAGACC  736

seq1  AATTGATATTCTTCTAGAGTTTCAATTTCTCAATAAGCTAAAAATATTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATATTCTTCTAGAGTTTCAATTTCTCAATAAGCTAAAAATATTCA  786

seq1  CTGATATAATTGTTTCTGCTCCACAGTTTCTAAAATTTATAGTCTATACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATAATTGTTTCTGCTCCACAGTTTCTAAAATTTATAGTCTATACC  836

seq1  TTGCTAATCAATATAGATTTAATTTTCAAAACAGGTATGGTACTCACCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAATCAATATAGATTTAATTTTCAAAACAGGTATGGTACTCACCCA  886

seq1  TTCAGGATCACTGTCTCTATGTATTTTTAAATTTTTTATCAGGCCATTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGATCACTGTCTCTATGTATTTTTAAATTTTTTATCAGGCCATTTG  936

seq1  TGATGATTCTCTCTTTTTGAGGTTTATATTGTTATATAAGTTCTAAAAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATTCTCTCTTTTTGAGGTTTATATTGTTATATAAGTTCTAAAAGA  986

seq1  GTGGGGTGACATTTTACTCTCCTCCAAACCTTTTACCTACCTCTTTTGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTGACATTTTACTCTCCTCCAAACCTTTTACCTACCTCTTTTGTG  1036

seq1  TTTCATATTTGTCTGGGGAGAAAATTTGCATAAATGAAATTTACCTGCAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATTTGTCTGGGGAGAAAATTTGCATAAATGAAATTTACCTGCAG  1086

seq1  AAATACATATTAACTATCTAAGATATAAATGTAAGGACAAGGTGAATTC  1149
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATATTAACTATCTAAGATATAAATGTAAGGACAAGGTGAATTC  1135

seq1: chrX_127666300_127667433
seq2: B6Ng01-061H12.g_68_1183

seq1  GAATTCTCTTTATTCTTCTTTGAATGCAACTTTCATAGTTAAGACAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTATTCTTCTTTGAATGCAACTTTCATAGTTAAGACAATTA  50

seq1  CTGTACTCTTCTCATGGAAAAATATTTTTAACAATACTAATTAAATGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTCTTCTCATGGAAAAATATTTTTAACAATACTAATTAAATGTCT  100

seq1  TTTATTTCTCAGAGCTTTATTCAGATTATCTATGCACTGTCAAGCTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTCAGAGCTTTATTCAGATTATCTATGCACTGTCAAGCTGATT  150

seq1  TTGGTAGATTGGTAGTTTTTCTGAGTATTTTTACTTCATCTGTATTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGATTGGTAGTTTTTCTGAGTATTTTTACTTCATCTGTATTTATG  200

seq1  TTCTTGGATTTCCTAGGAGAAGAGTTATGCACATTGTAAGCTGCAATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGATTTCCTAGGAGAAGAGTTATGCACATTGTAAGCTGCAATATG  250

seq1  GGTGCTGAGAATTGAATTCAAGTCTTCTTAATGAATACCCAGTACCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGAGAATTGAATTCAAGTCTTCTTAATGAATACCCAGTACCACCT  300

seq1  TTCCAGATCATTATTTCTAATTTTTTATAATCATTTCTAATTTTTAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGATCATTATTTCTAATTTTTTATAATCATTTCTAATTTTTAATAT  350

seq1  TTACTGCTCTCCTGGTTGTTTGTTGCTTTTTTTTTTTTCATCACCTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTCTCCTGGTTGTTTGTTGCTTTTTTTTTTTTCATCACCTAAAA  400

seq1  CAAGCTAGAGTTATCTGGATAGAGGAAAGCCAATTGAGAATATACCTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTAGAGTTATCTGGATAGAGGAAAGCCAATTGAGAATATACCTCTA  450

seq1  TCAGATGCCAAATCAGTAGGGCATTTTCTTGACTAATGTGGGAGAACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGCCAAATCAGTAGGGCATTTTCTTGACTAATGTGGGAGAACTCA  500

seq1  GCCTACTGTGGGTGGTGCCACATGAAGGCAGGTGGTCGTGGGTTGTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACTGTGGGTGGTGCCACATGAAGGCAGGTGGTCGTGGGTTGTATAA  550

seq1  GCAAGCAGCCTACTCAAGCGATGGGGAACAACCCAGTAAGCAGCACTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAGCCTACTCAAGCGATGGGGAACAACCCAGTAAGCAGCACTCTT  600

seq1  ATGTGTCCTGGGTTCCAGTTTCTTCCTTCGGCTCTCCTTCTGACTTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCCTGGGTTCCAGTTTCTTCCTTCGGCTCTCCTTCTGACTTCCTT  650

seq1  TGCAGAAAGACTGTAAACTGCATGGAGAAATAACCCCTTCCTTACACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAAGACTGTAAACTGCATGGAGAAATAACCCCTTCCTTACACAAG  700

seq1  TCACTTTTTGCCATGGTCCTTATCACTGCAACAGAAACCAAGCTAAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTTTGCCATGGTCCTTATCACTGCAACAGAAACCAAGCTAAGACA  750

seq1  GCTACCAAATAATAAGTTCCAAGAGGGAAAGAAAAAATAATTCCTATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCAAATAATAAGTTCCAAGAGGGAAAGAAAAAATAATTCCTATTAT  800

seq1  TTTATGACCTAGTTGCCATTGTTTCAAAGAGTGATATAGCACATATTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGACCTAGTTGCCATTGTTTCAAAGAGTGATATAGCACATATTTCT  850

seq1  CATTATTTTCATGTGAATCAAATTATTGTATTCCCAGTCATATAAAGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTTCATGTGAATCAAATTATTGTATTCCCAGTCATATAAAGGAT  900

seq1  AGCATATTCAATTATTTGCAATGCTTTGAAAGTATAACAACGTAAAAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATTCAATTATTTGCAATGCTTTGAAAGTATAACAACGTAAAAACA  950

seq1  GAATTCTAGGCCTTTAGGCCCAGGCTCGGGAATGTGGCCTTTGTAAAGGT  1000
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  GAATTCTAGGCCTTTAGGCTCAGGCTC-GGAATGTGGCCTTTGTAAAGGT  999

seq1  ATGCTAATCATAAAACAAATAGCGACATTCCTCCATCCACCCGCTTCCTG  1050
      ||||| |||||||||| |||||||||| |||| ||| ||| ||||||   
seq2  ATGCT-ATCATAAAAC-AATAGCGACA-TCCT-CAT-CACTCGCTTC--T  1042

seq1  GGTTCAAAGAGTGCTCATTCAAAGAAAGTCACCCAGAACCTGCAATGCAA  1100
      || ||||||| |||||||||||   |||||| |||| |||||| |||| |
seq2  GGATCAAAGA-TGCTCATTCAA--GAAGTCA-CCAG-ACCTGC-ATGC-A  1085

seq1  ATGTGCTATTGTTAGGGGCTCTTAGAAGCTGTCT  1134
      ||||||||||||   |||||||||| ||||||||
seq2  ATGTGCTATTGT--AGGGCTCTTAG-AGCTGTCT  1116