BAC Information

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BAC

Clone NameB6Ng01-062D05
ChromosomeX (Build37)
Map Location 99,053,159 - 99,197,686
singlet/doubletdoublet
Overlap geneEG621083
Upstream geneTex11, LOC668271, LOC100042392, Slc7a3, Snx12, Mllt7, Gm614, Il2rg, Med12, Nlgn3, LOC100042407, Gjb1, Zmym3, Nono, Itgb1bp2, LOC620837, Taf1, Ogt, LOC620865, LOC668291, Cxcr3, LOC632454, LOC668302, EG212753, 8030474K03Rik, LOC668308, LOC100042465, H3f3a-ps1
Downstream geneRgag4, LOC100042480, LOC331476, Pin4, LOC670921, Ercc6l, LOC668318, Rps4x, LOC100043080, Cited1, Hdac8, Phka1, LOC668331, LOC100042516, EG668339, Dmrtc1b, EG668343, LOC100043105, EG668349, EG382233, Dmrtc1c, EG668360, LOC668357, 1700031F05Rik, EG668369, Dmrtc1a, 1700011M02Rik, 1700018G05Rik, EG331480
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062D05.bB6Ng01-062D05.g
ACCDH882670DH882671
length1,159937
definitionDH882670|Mus musculus domesticus DNA, BAC clone: B6Ng01-062D05, 5' end.DH882671|Mus musculus domesticus DNA, BAC clone: B6Ng01-062D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,196,503 - 99,197,686)(99,053,159 - 99,054,101)
sequence
gaattcagtttacagctatgcaaatagagtctaggaaggggaggcagctt
ggccaagatctctatataaccaccttggctggaaagaggatattcaaaag
agacacatgtgtccatccccttggctatcagattattgaaatgataaccc
caagaaattggaatgctatagaggggaaagatgaagtcccggtgtcagcc
agaggaagaacttgtctcctaggggggaaaaaatcacagcttttacaact
aatcagtctatcttgctggacagacagaaactaaaccattgtaagtcagt
aatgggtgggaccatatcttgatcaggactgactagttactgtgttggtt
agtttgtctacttctcacaaactagagtcccctagaaagagaaacttcac
gagagggaagtccctccatcagatttgtctgtggacaagtctggaggggg
catttttattattaatgattgatgtgggagagagttcagtagactggagg
aagtgccatgcttgggtaggtggtcctgggctggataagaaaacaggctg
aacaagccataaatagcaagtcagtaagtagcattcctctagggttcctg
tttcagctcctccccttcttagtgggatgtgtaagccaaatagacccttt
cctccctgaggttaggtttgtccagtgttttatcacagcaatagaaacct
aattaggagagttatgcacccctcctgccttacatttatacctaagtgtt
aggaccctgaagatggacttggatatgtgcagtagaccactgtattcgtt
cctcttcccagtgaggtcatacttaaatcctttccctatttttcaccatt
aatccatattctctctctctctctccctttgccctaccatcctctcctcc
ctcccttaaaaaaatccacaggagcttctgtgaagtgaaagttctcaagt
taatgaaagaagaggagctgtgtgccaggttgcaagactatgatagaaca
aatttatctggaaactgtgagaagaagagtgcacgaaaaggatgacttgt
gggtggaagacatgaccagaaactgttcaactgttgctggcagtacgtgc
catcgaaccacggagccttaagaaatctcgctaggatctagaagaggtga
gaccagcca
gaattccttccttcctcttttctagccttggcccatcctgtgatagtttc
tggtaggtggagatgaagtagaatgcaggtccccagcccattgggaggaa
tgattctactgctgtgtagatgaccgaaggatccagggaaggtgaaagag
acacagcagactcagtgcagagatgtgtccaggaggatgtgatgtctatg
tctgaaagacagtgtgcattattgtgacaggggaagaggacaatgtggac
ttctagttcaggaggttatctaagctagtatagggatgtaagagggagct
gatgtggggagaggattagctggagagattcaggagagaacacaaggccc
catcacagcagcagaggtggggtgagggaactccttacatcctgtttgtt
ggtcagggagttagagagtgttaggacggtaaaacaaaaaggtatggtta
aattgaagctgtacttttgaggcagatagggctgaggttacctggcagag
ccacagtatctccctccctatacccacccccagcccccaaagtctctagc
aggagggaccttaagaaaaagaaagaaaaaaagtctacctgcttatgtgt
ctctggcccttgagaccgaaatctattattcatgccagttttgctgtgag
ttgggggcgtttgactgcatcttgcgttacttttttttccctaaagaaca
cagattctttggcgtgatcagcatgttctctatggggaaaacaagaaaat
agttttcttcctttttattttgtggtgctgggaattgaactatatagggc
tacctcatgctagacaggcactccacactacatcctagtctaaacaaaag
catctctccctttggaaaacagattcaaaggaaggataggttttaaatcc
attcttttttcttctcttctttgagcagattcatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_99196503_99197686
seq2: B6Ng01-062D05.b_48_1206 (reverse)

seq1  TGGCTTGGTCTCACTCTCTTTCCTAGATCCCTAGCTGGGGTTTTCTTATA  50
      |||| ||||||||| |||||  |||||| ||||||  | | ||||||| |
seq2  TGGC-TGGTCTCAC-CTCTT--CTAGAT-CCTAGC--GAGATTTCTTA-A  42

seq1  GGCTCCGTGGTTCTGATGGCACGTACTGCCAGCAACAGTTGGAACACGTT  100
      ||||||||||||| |||||||||||||||||||||||||| |||||   |
seq2  GGCTCCGTGGTTC-GATGGCACGTACTGCCAGCAACAGTT-GAACA--GT  88

seq1  TTCTGCTCATGTCTTCCACCCACAAATTTCATTCCTTTTTCGTGCACTTC  150
      ||||| |||||||||||||||||||   ||||  | ||||||||||| ||
seq2  TTCTGGTCATGTCTTCCACCCACAA--GTCAT--CCTTTTCGTGCAC-TC  133

seq1  TTCTTTCTTCACAGTTTTCCAGATAAATTTGTTCTTATCATAGTCTTTGC  200
      |||||   |||||| ||||||||||||||||||| |||||||||| ||||
seq2  TTCTT--CTCACAG-TTTCCAGATAAATTTGTTC-TATCATAGTC-TTGC  178

seq1  AACCTTGGCACACAGCTCCTCTTTCTTTCATTAACTTGAGAACTTTCACT  250
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  AACC-TGGCACACAGCTCCTC-TTCTTTCATTAACTTGAGAACTTTCACT  226

seq1  TCACAGAAGCTCCTGTGGATTTTTTTTAAGGGAGGGAGGAGAGGATGGTA  300
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCACAGAAGCTCCTGTGGA-TTTTTTTAAGGGAGGGAGGAGAGGATGGTA  275

seq1  GGGCAAAGGGAGAGAGAGAGAGAGAATATGGATTAATGGTGAAAAATAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAGGGAGAGAGAGAGAGAGAATATGGATTAATGGTGAAAAATAGG  325

seq1  GAAAGGATTTAAGTATGACCTCACTGGGAAGAGGAACGAATACAGTGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGATTTAAGTATGACCTCACTGGGAAGAGGAACGAATACAGTGGTC  375

seq1  TACTGCACATATCCAAGTCCATCTTCAGGGTCCTAACACTTAGGTATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCACATATCCAAGTCCATCTTCAGGGTCCTAACACTTAGGTATAAA  425

seq1  TGTAAGGCAGGAGGGGTGCATAACTCTCCTAATTAGGTTTCTATTGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGCAGGAGGGGTGCATAACTCTCCTAATTAGGTTTCTATTGCTGT  475

seq1  GATAAAACACTGGACAAACCTAACCTCAGGGAGGAAAGGGTCTATTTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAACACTGGACAAACCTAACCTCAGGGAGGAAAGGGTCTATTTGGC  525

seq1  TTACACATCCCACTAAGAAGGGGAGGAGCTGAAACAGGAACCCTAGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACATCCCACTAAGAAGGGGAGGAGCTGAAACAGGAACCCTAGAGGA  575

seq1  ATGCTACTTACTGACTTGCTATTTATGGCTTGTTCAGCCTGTTTTCTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACTTACTGACTTGCTATTTATGGCTTGTTCAGCCTGTTTTCTTAT  625

seq1  CCAGCCCAGGACCACCTACCCAAGCATGGCACTTCCTCCAGTCTACTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCAGGACCACCTACCCAAGCATGGCACTTCCTCCAGTCTACTGAA  675

seq1  CTCTCTCCCACATCAATCATTAATAATAAAAATGCCCCCTCCAGACTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCCACATCAATCATTAATAATAAAAATGCCCCCTCCAGACTTGT  725

seq1  CCACAGACAAATCTGATGGAGGGACTTCCCTCTCGTGAAGTTTCTCTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGACAAATCTGATGGAGGGACTTCCCTCTCGTGAAGTTTCTCTTTC  775

seq1  TAGGGGACTCTAGTTTGTGAGAAGTAGACAAACTAACCAACACAGTAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGACTCTAGTTTGTGAGAAGTAGACAAACTAACCAACACAGTAACT  825

seq1  AGTCAGTCCTGATCAAGATATGGTCCCACCCATTACTGACTTACAATGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTCCTGATCAAGATATGGTCCCACCCATTACTGACTTACAATGGT  875

seq1  TTAGTTTCTGTCTGTCCAGCAAGATAGACTGATTAGTTGTAAAAGCTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTCTGTCTGTCCAGCAAGATAGACTGATTAGTTGTAAAAGCTGTG  925

seq1  ATTTTTTCCCCCCTAGGAGACAAGTTCTTCCTCTGGCTGACACCGGGACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCCCCCCTAGGAGACAAGTTCTTCCTCTGGCTGACACCGGGACT  975

seq1  TCATCTTTCCCCTCTATAGCATTCCAATTTCTTGGGGTTATCATTTCAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTCCCCTCTATAGCATTCCAATTTCTTGGGGTTATCATTTCAAT  1025

seq1  AATCTGATAGCCAAGGGGATGGACACATGTGTCTCTTTTGAATATCCTCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGATAGCCAAGGGGATGGACACATGTGTCTCTTTTGAATATCCTCT  1075

seq1  TTCCAGCCAAGGTGGTTATATAGAGATCTTGGCCAAGCTGCCTCCCCTTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCCAAGGTGGTTATATAGAGATCTTGGCCAAGCTGCCTCCCCTTC  1125

seq1  CTAGACTCTATTTGCATAGCTGTAAACTGAATTC  1184
      ||||||||||||||||||||||||||||||||||
seq2  CTAGACTCTATTTGCATAGCTGTAAACTGAATTC  1159

seq1: chrX_99053159_99054101
seq2: B6Ng01-062D05.g_68_1004

seq1  GAATTCCTTCCTTCCTCTTTTCTAGCCTTGGCCCATCCTGTGATAGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCTTCCTCTTTTCTAGCCTTGGCCCATCCTGTGATAGTTTC  50

seq1  TGGTAGGTGGAGATGAAGTAGAATGCAGGTCCCCAGCCCATTGGGAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGTGGAGATGAAGTAGAATGCAGGTCCCCAGCCCATTGGGAGGAA  100

seq1  TGATTCTACTGCTGTGTAGATGACCGAAGGATCCAGGGAAGGTGAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTACTGCTGTGTAGATGACCGAAGGATCCAGGGAAGGTGAAAGAG  150

seq1  ACACAGCAGACTCAGTGCAGAGATGTGTCCAGGAGGATGTGATGTCTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCAGACTCAGTGCAGAGATGTGTCCAGGAGGATGTGATGTCTATG  200

seq1  TCTGAAAGACAGTGTGCATTATTGTGACAGGGGAAGAGGACAATGTGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAGACAGTGTGCATTATTGTGACAGGGGAAGAGGACAATGTGGAC  250

seq1  TTCTAGTTCAGGAGGTTATCTAAGCTAGTATAGGGATGTAAGAGGGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTTCAGGAGGTTATCTAAGCTAGTATAGGGATGTAAGAGGGAGCT  300

seq1  GATGTGGGGAGAGGATTAGCTGGAGAGATTCAGGAGAGAACACAAGGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGGGAGAGGATTAGCTGGAGAGATTCAGGAGAGAACACAAGGCCC  350

seq1  CATCACAGCAGCAGAGGTGGGGTGAGGGAACTCCTTACATCCTGTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAGCAGCAGAGGTGGGGTGAGGGAACTCCTTACATCCTGTTTGTT  400

seq1  GGTCAGGGAGTTAGAGAGTGTTAGGACGGTAAAACAAAAAGGTATGGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGGAGTTAGAGAGTGTTAGGACGGTAAAACAAAAAGGTATGGTTA  450

seq1  AATTGAAGCTGTACTTTTGAGGCAGATAGGGCTGAGGTTACCTGGCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAGCTGTACTTTTGAGGCAGATAGGGCTGAGGTTACCTGGCAGAG  500

seq1  CCACAGTATCTCCCTCCCTATACCCACCCCCAGCCCCCAAAGTCTCTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTATCTCCCTCCCTATACCCACCCCCAGCCCCCAAAGTCTCTAGC  550

seq1  AGGAGGGACCTTAAGAAAAAGAAAGAAAAAAAGTCTACCTGCTTATGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGACCTTAAGAAAAAGAAAGAAAAAAAGTCTACCTGCTTATGTGT  600

seq1  CTCTGGCCCTTGAGACCGAAATCTATTATTCATGCCAGTTTTGCTGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCCCTTGAGACCGAAATCTATTATTCATGCCAGTTTTGCTGTGAG  650

seq1  TT-GGGGCGTTTGACTGCATCTTGCGTTACTTTTTTTTCCCTAAAGAACA  699
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGCGTTTGACTGCATCTTGCGTTACTTTTTTTTCCCTAAAGAACA  700

seq1  CAGATTCTTTGGCGTGATCAGCATGTTCTCTAT-GGGAAAACAAGAAAAA  748
      ||||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  CAGATTCTTTGGCGTGATCAGCATGTTCTCTATGGGGAAAACAAG-AAAA  749

seq1  TAGTTTTCTTCCCTTTTTATTTTGTGGTGCTGGGAATTGAACTTATATAG  798
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  TAGTTTTCTT-CCTTTTTATTTTGTGGTGCTGGGAATTGAAC-TATATAG  797

seq1  GGCCTACCTCATGCTAGACAGGCACTCCACACTACATCCTAGTCTAAACA  848
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG-CTACCTCATGCTAGACAGGCACTCCACACTACATCCTAGTCTAAACA  846

seq1  AAAGCATCTCTCCCTTTGGAAAACAGATTCAAAGGAAGGATAGGTTTTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  AAAGCATCTCTCCCTTTGGAAAACAGATTCAAAGGAAGGATAGGTTTT--  894

seq1  AGATCCATTCCTTTTTTTTTCTCTTCCTTTGAGCAGATTCATTTG  943
      | ||||||| ||||||| ||||||| |||||||||||||||||||
seq2  AAATCCATT-CTTTTTTCTTCTCTT-CTTTGAGCAGATTCATTTG  937