BAC Information

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BAC

Clone NameB6Ng01-063A06
ChromosomeX (Build37)
Map Location 130,629,012 - 130,748,960
singlet/doubletdoublet
Overlap geneNox1, Xkrx, Arl13a
Upstream geneLOC665854, LOC100040794, Pcdh19, LOC100040831, Tnmd, Tspan6, Srpx2, Sytl4, LOC665889, Cstf2
Downstream gene4732479N06Rik, LOC100040849, Tmem35, Cenpi, Drp2, Taf7l, LOC669370, LOC674122, Timm8a1, Btk, Rpl36a, Gla, Hnrph2, LOC665936, LOC665941, Armcx1, LOC100040933, LOC100040520, Armcx6, Armcx3, Armcx2, LOC637800, LOC100040987, Nxf2, B930008K04Rik, EG621246, LOC100040635, Tceal6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063A06.bB6Ng01-063A06.g
ACCDH883239DH883240
length1,096893
definitionDH883239|Mus musculus domesticus DNA, BAC clone: B6Ng01-063A06, 5' end.DH883240|Mus musculus domesticus DNA, BAC clone: B6Ng01-063A06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,629,012 - 130,630,116)(130,748,302 - 130,748,960)
sequence
gaattcaccagacagggtatttcttctcttttatagcctctgaattgaca
agatacagattattctccagcagcctggactgtgcagcagtgtttgcagt
ggtgctcaggccagccgtgtagctacaaactgaacgaactgcttggtgca
tcccctgctagtgccctatgccctatgccccactcctatctccagataga
ttctcctgacccacttatgaagcaaaagacctcgggctataatggctcag
gccagaggaatagtgaaatgtgggaatgtaccttttgtgttttgagcttg
ttgtcggcacgctggaatttgtaccagatagatttcaagatggaagcaaa
gggagtgaccccaatccctgccccaaccagtacagccacttcatactgga
aaacatcctcactgactgtgccaaagggaccgtccacctcgatcctagca
aatgagaaaagacaactttcataacagacttgttttctcttttctgttac
tctacatcttgttttgagtctcaaggacctacctgggcattggtgagtgc
tgttgttcaaatgtccttatgagatttcgtgtccagtcccctgctgctcg
aatatgaacggagaaaaattcttcctctggagcagaagtcagagtgaagg
gatgccactccaggaaggaaatggaggggcaatttacaaatatatactgt
cctacttccatgctaaagcctcgcttcctcatctgcaattccaaaacatt
agatgggtgcatgacaacctgtgaatgaaacacagagatcattagaggca
aactccaaacatgaaaaggacagacatttaaatagatgaagaaagcccaa
gtgcatctaacttatagtacatggtcaagtcctctctagaggcactccct
aagctactacttagctccagacaaggttctgtgttgtcaggttcctgata
cttcagagaagcaaaaaaaaaaatctttagattattatattttagttatc
ttacaaatatggatccattgtgaaatatatatacatatcactgtgatata
tatatatgtatttacatatgtgtgcattatatatgtattataatac
gaattcaaaatccacaatgtattttctaccgaatgtgtatcgtttgcatc
accttaaagctgagaaatcatcaacttgaaccatttgaaagctggtacta
atcagcttccaaacgctgacaccattgcatacgctagcaagattttgctg
aaaggacccagatatggctgtctcttgtgagactatgccggggcctggca
aacacagaagtggatgctcacagtcagctattggatggatcacagggccc
tcaatggaggagctagagaaagtacccaaggagctgaagggatctgcaac
cctataggtggaacaacaatatgaactaaccaatacccccccaccccccg
agctcatgtctctagctgcatatgaatcagaagatggcctagttggccat
cagtggaaagagaggcccattggtcgtgcaaactttatatgcctcagtac
aggggaacgccagggccaagaagtgggagtgggtggggaaacgtgtgggg
gacttttgggatagcagtggaaatgtaaatgaaataaatacccaattaaa
aaaagaaatacaacctttaatatataaaaacaagaaaaaagaaaaaagaa
agctggtactgaattttgggcaaacaaaaccacacatagcagagtccctt
ccctgatgctgtgggtgtgcatttttcagcatttgtgttatatgtaaata
ttacagtttctagtgaaaatttaaaatgcagttttgaggagaaatgaagc
agagaaaagagacagggaaggccatccttctcacattgtcacctttataa
tgttgcttgctaaatataacctacttgtcaaatcctttcatacagttgta
agaagtgctagtggaggacttcttttcctcctcctcctcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_130629012_130630116
seq2: B6Ng01-063A06.b_47_1142

seq1  GAATTCACCAGACAGGGTATTTCTTCTCTTTTATAGCCTCTGAATTGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAGACAGGGTATTTCTTCTCTTTTATAGCCTCTGAATTGACA  50

seq1  AGATACAGATTATTCTCCAGCAGCCTGGACTGTGCAGCAGTGTTTGCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAGATTATTCTCCAGCAGCCTGGACTGTGCAGCAGTGTTTGCAGT  100

seq1  GGTGCTCAGGCCAGCCGTGTAGCTACAAACTGAACGAACTGCTTGGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCAGGCCAGCCGTGTAGCTACAAACTGAACGAACTGCTTGGTGCA  150

seq1  TCCCCTGCTAGTGCCCTATGCCCTATGCCCCACTCCTATCTCCAGATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGCTAGTGCCCTATGCCCTATGCCCCACTCCTATCTCCAGATAGA  200

seq1  TTCTCCTGACCCACTTATGAAGCAAAAGACCTCGGGCTATAATGGCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGACCCACTTATGAAGCAAAAGACCTCGGGCTATAATGGCTCAG  250

seq1  GCCAGAGGAATAGTGAAATGTGGGAATGTACCTTTTGTGTTTTGAGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGGAATAGTGAAATGTGGGAATGTACCTTTTGTGTTTTGAGCTTG  300

seq1  TTGTCGGCACGCTGGAATTTGTACCAGATAGATTTCAAGATGGAAGCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCGGCACGCTGGAATTTGTACCAGATAGATTTCAAGATGGAAGCAAA  350

seq1  GGGAGTGACCCCAATCCCTGCCCCAACCAGTACAGCCACTTCATACTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGACCCCAATCCCTGCCCCAACCAGTACAGCCACTTCATACTGGA  400

seq1  AAACATCCTCACTGACTGTGCCAAAGGGACCGTCCACCTCGATCCTAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCCTCACTGACTGTGCCAAAGGGACCGTCCACCTCGATCCTAGCA  450

seq1  AATGAGAAAAGACAACTTTCATAACAGACTTGTTTTCTCTTTTCTGTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAAAAGACAACTTTCATAACAGACTTGTTTTCTCTTTTCTGTTAC  500

seq1  TCTACATCTTGTTTTGAGTCTCAAGGACCTACCTGGGCATTGGTGAGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATCTTGTTTTGAGTCTCAAGGACCTACCTGGGCATTGGTGAGTGC  550

seq1  TGTTGTTCAAATGTCCTTATGAGATTTCGTGTCCAGTCCCCTGCTGCTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTCAAATGTCCTTATGAGATTTCGTGTCCAGTCCCCTGCTGCTCG  600

seq1  AATATGAACGGAGAAAAATTCTTCCTCTGGAGCAGAAGTCAGAGTGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAACGGAGAAAAATTCTTCCTCTGGAGCAGAAGTCAGAGTGAAGG  650

seq1  GATGCCACTCCAGGAAGGAAATGGAGGGGCAATTTACAAATATATACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCACTCCAGGAAGGAAATGGAGGGGCAATTTACAAATATATACTGT  700

seq1  CCTACTTCCATGCTAAAGCCTCGCTTCCTCATCTGCAATTCCAAAACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTCCATGCTAAAGCCTCGCTTCCTCATCTGCAATTCCAAAACATT  750

seq1  AGATGGGTGCATGACAACCTGTGAATGAAACACAGAGATCATTAGAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGTGCATGACAACCTGTGAATGAAACACAGAGATCATTAGAGGCA  800

seq1  AACTCCAAACATGAAAAGGACAGACATTTAAATAGATGAAGAAAGCCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAAACATGAAAAGGACAGACATTTAAATAGATGAAGAAAGCCCAA  850

seq1  GTGCATCTAACTTATAGTACATGGTCAAGTCCTCTCTAGAAGGCACTCCC  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTGCATCTAACTTATAGTACATGGTCAAGTCCTCTCTAG-AGGCACTCCC  899

seq1  TAAGCTACTACTTAGCTCCAGACAAGGTTCTGTGTTGTCAGGGTTCCTGA  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAAGCTACTACTTAGCTCCAGACAAGGTTCTGTGTTGTCA-GGTTCCTGA  948

seq1  TACTTCAAGAGAAGCAAAAAAAAAAAATCTTTAAGATTATTATATTTTAG  1000
      |||||| |||||||| |||||||||||||||| |||||||||||||||||
seq2  TACTTC-AGAGAAGC-AAAAAAAAAAATCTTT-AGATTATTATATTTTAG  995

seq1  TTATCTTACAAAATTATGGATTCCATTGTGAAATATATATACATATCACT  1050
      ||||||||||||  |||||| |||||||||||||||||||||||||||||
seq2  TTATCTTACAAA--TATGGA-TCCATTGTGAAATATATATACATATCACT  1042

seq1  GTGATATATATATATGTATTTACATATGTGTGCATTATATATGTATTATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATATATATATGTATTTACATATGTGTGCATTATATATGTATTATA  1092

seq1  TATAC  1105
       ||||
seq2  -ATAC  1096

seq1: chrX_130748302_130748960
seq2: B6Ng01-063A06.g_301_960 (reverse)

seq1  GGAGGAGGAGGAGGAGGAAAAGAAGTCCTCCACTAGCACTTCTTACAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGGAGGAGGAAAAGAAGTCCTCCACTAGCACTTCTTACAACT  50

seq1  GTATGAAAGGATTTGACAAGTAGGTTATATTTAGCAAGCAACATTATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAAGGATTTGACAAGTAGGTTATATTTAGCAAGCAACATTATAAA  100

seq1  GGTGACAATGTGAGAAGGATGGCCTTCCCTGTCTCTTTTCTCTGCTTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACAATGTGAGAAGGATGGCCTTCCCTGTCTCTTTTCTCTGCTTCAT  150

seq1  TTCTCCTC-AAACTGCATTTTAAATTTTCACTAGAAACTGTAATATTTAC  199
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCAAAACTGCATTTTAAATTTTCACTAGAAACTGTAATATTTAC  200

seq1  ATATAACACAAATGCTGAAAAATGCACACCCACAGCATCAGGGAAGGGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACACAAATGCTGAAAAATGCACACCCACAGCATCAGGGAAGGGAC  250

seq1  TCTGCTATGTGTGGTTTTGTTTGCCCAAAATTCAGTACCAGCTTTCTTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTATGTGTGGTTTTGTTTGCCCAAAATTCAGTACCAGCTTTCTTTT  300

seq1  TTCTTTTTTCTTGTTTTTATATATTAAAGGTTGTATTTCTTTTTTTAATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTCTTGTTTTTATATATTAAAGGTTGTATTTCTTTTTTTAATT  350

seq1  GGGTATTTATTTCATTTACATTTCCACTGCTATCCCAAAAGTCCCCCACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTTATTTCATTTACATTTCCACTGCTATCCCAAAAGTCCCCCACA  400

seq1  CGTTTCCCCACCCACTCCCACTTCTTGGCCCTGGCGTTCCCCTGTACTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCCCCACCCACTCCCACTTCTTGGCCCTGGCGTTCCCCTGTACTGA  450

seq1  GGCATATAAAGTTTGCACGACCAATGGGCCTCTCTTTCCACTGATGGCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATAAAGTTTGCACGACCAATGGGCCTCTCTTTCCACTGATGGCCA  500

seq1  ACTAGGCCATCTTCTGATTCATATGCAGCTAGAGACATGAGCTCGGGGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCCATCTTCTGATTCATATGCAGCTAGAGACATGAGCTCGGGGGG  550

seq1  TGGGGGGGTATTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGGTATTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAG  600

seq1  ATCCCTTCAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGAGGGCCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTCAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGAGGGCCCT  650

seq1  GTGATCCATC  659
      ||||||||||
seq2  GTGATCCATC  660