BAC Information

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BAC

Clone NameB6Ng01-063C03
ChromosomeX (Build37)
Map Location 151,612,079 - 151,766,097
singlet/doubletdoublet
Overlap geneLOC667369, Sat1, Acot9, LOC667383, Prdx4
Upstream geneLOC635580, EG625767, LOC270665, LOC100040076, 4930524N10Rik, EG434879, LOC667313, 4930542N07Rik, EG434881, LOC100040899, LOC667331, LOC100040925, LOC100040937, Magea6, Magea3, LOC626034, Magea8, Magea2, Magea5, Magea1, 1700042B14Rik, LOC245676, Amd-ps1
Downstream geneLOC667394, Ptchd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063C03.bB6Ng01-063C03.g
ACCDH883319DH883320
length8981,025
definitionDH883319|Mus musculus domesticus DNA, BAC clone: B6Ng01-063C03, 5' end.DH883320|Mus musculus domesticus DNA, BAC clone: B6Ng01-063C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,612,079 - 151,612,982)(151,765,067 - 151,766,097)
sequence
gaattccactttctgggtgttaaagttagcaagaacccttcttgcattcc
aaaagaatgcaacttgtattcctttgaggcagggattgtgaatgttttgt
ttgttttctttgtggcccctttgaccattattgcaacagacattagacat
gaagagtcactgaagacatttgccctatggactcacctagaaaaggcaat
ttggggactggagagatagttaagtgattaagagcccatattactctttc
agaggatctgatttcggttcctggtacccacatcaagcagtttaaagttc
aactatagggtgtttaacaccctgttctggcctctgcatgctctacaata
ccctccaacacacagcctttctctctctctctctctctctctctctctct
ctctctctctctccacacacacacacacacacacacacacacacacacac
aatttaaaaataacccaggcatggtatctcatgcccttaatctgtccgat
gaagaaacagaacaggcagatgaatgcatttctatgagtttgaagctagt
atggtttacatagtgggttccaatctttccaaggctacaaaactgatcag
cccaatcaattaaaagtaaaaggaaagaaaaagtgatttttcaaacttag
ggggaatgtttggtaacctgaaaatttttccttttgcttttctctttaaa
cacatatctattattgggctagatagctcagtggttaagagctggtattg
ctcttgtacagaatctgggttcagttcccaacatgcattgcaaatgaatc
atagttacctataactccaggggaactgacactaatctgaccgtgagtat
aatgatatggacacaactctattcataaccaaaaaatcttgtcttaaa
gaattctttggattttaaaatgcaatgttcagtttattaaacttataaat
acaaaacaggtgtttttgataaacacattaaaaattttaagtatatgtaa
caaagcccagttggttgtcgatctataattataagtaacaaataagtcct
gattattaatagatgaatattaaatctatattctcatttgttttaccatt
tttgtaatgattataaatccttctaggattaacagttagcatgccaacta
agaataaagttataccattccaaataatttagatgtgctcttctaagaga
atctggagctatattatcaactaggaatgttttatactagtactagccaa
ggtttctattaagtaccagaactggggctgcaacccccctgatcagtatt
tccggttttgtttagtttctgctgccatgttagtaccctcccatggggta
acagcccacaagtgttgtcattttaggttacagacacttaaatcagagga
ctgatggatctgaggtcatgactaagttctcactgcttcaaatggagttt
attttttggccttgcagagcagtgcaaggtcttctctgtcaagcacctta
gctgtcttccaaggttttgtctcgtgatccattctaagacttaagccata
tccttttattataatgagatccagtattatctataatttatgtgtgttaa
aaaacccgcaatctgtctgggcataatgatccctgtcttcagtcccagca
ctggggaagcagaggtgaatagatctctgggagttggaggttagcttgtt
ctcctaattatctctttaatctgtcaggtctacttctagaagttaacaga
gatgtatacaaaataagaatataggatacttccagcagtattcataaaag
aaaatgcaatagtttcctgcctatcagtagagatcagtaaaatatggtat
ttcatacatgttaccagtgaggaaaaggcacaaaaatagtacagtagcct
gtttttgtttgggagtgggtatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_151612079_151612982
seq2: B6Ng01-063C03.b_45_942

seq1  GAATTCCACTTTCTGGGTGTTAAAGTTAGCAAGAACCCTTCTTGCATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTTCTGGGTGTTAAAGTTAGCAAGAACCCTTCTTGCATTCC  50

seq1  AAAAGAATGCAACTTGTATTCCTTTGAGGCAGGGATTGTGAATGTTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATGCAACTTGTATTCCTTTGAGGCAGGGATTGTGAATGTTTTGT  100

seq1  TTGTTTTCTTTGTGGCCCCTTTGACCATTATTGCAACAGACATTAGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCTTTGTGGCCCCTTTGACCATTATTGCAACAGACATTAGACAT  150

seq1  GAAGAGTCACTGAAGACATTTGCCCTATGGACTCACCTAGAAAAGGCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTCACTGAAGACATTTGCCCTATGGACTCACCTAGAAAAGGCAAT  200

seq1  TTGGGGACTGGAGAGATAGTTAAGTGATTAAGAGCCCATATTACTCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGACTGGAGAGATAGTTAAGTGATTAAGAGCCCATATTACTCTTTC  250

seq1  AGAGGATCTGATTTCGGTTCCTGGTACCCACATCAAGCAGTTTAAAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATCTGATTTCGGTTCCTGGTACCCACATCAAGCAGTTTAAAGTTC  300

seq1  AACTATAGGGTGTTTAACACCCTGTTCTGGCCTCTGCATGCTCTACAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAGGGTGTTTAACACCCTGTTCTGGCCTCTGCATGCTCTACAATA  350

seq1  CCCTCCAACACACAGCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAACACACAGCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  400

seq1  CTCTCTCTCTCTCCACACACACACACACACACACACACACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCCACACACACACACACACACACACACACACACACACAC  450

seq1  AATTTAAAAATAACCCAGGCATGGTATCTCATGCCCTTAATCTGTCCGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAAATAACCCAGGCATGGTATCTCATGCCCTTAATCTGTCCGAT  500

seq1  GAAGAAACAGAACAGGCAGATGAATGCATTTCTATGAGTTTGAAGCTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAACAGAACAGGCAGATGAATGCATTTCTATGAGTTTGAAGCTAGT  550

seq1  ATGGTTTACATAGTGGGTTCCAATCTTTCCAAGGCTACAAAACTGATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTACATAGTGGGTTCCAATCTTTCCAAGGCTACAAAACTGATCAG  600

seq1  CCCAATCAATTAAAAGTAAAAGGAAAGAAAAAGTGATTTTTCAAAACTTA  650
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCCAATCAATTAAAAGTAAAAGGAAAGAAAAAGTGATTTTTC-AAACTTA  649

seq1  GGGGGAATGTTTGGTAACCTG-AAATTTTTCCTTTTGCTTTTCTCTTTAA  699
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGGGGAATGTTTGGTAACCTGAAAATTTTTCCTTTTGCTTTTCTCTTTAA  699

seq1  ACACATATCTAATTATTGGGCTAGATAGCTCAGTGGTTAAGAGCTGGTAT  749
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACACATATCT-ATTATTGGGCTAGATAGCTCAGTGGTTAAGAGCTGGTAT  748

seq1  TGCTCTTGTACAGAATCTGGGTTCAGTTCCCAACATGCATTGCAAATGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTGTACAGAATCTGGGTTCAGTTCCCAACATGCATTGCAAATGAA  798

seq1  TCATAGTTACCTATAACTCCAGGGGAACTGACACT-ATCTGACCTTGAGT  848
      ||||||||||||||||||||||||||||||||||| |||||||| |||||
seq2  TCATAGTTACCTATAACTCCAGGGGAACTGACACTAATCTGACCGTGAGT  848

seq1  ATCAATGTATATGTACACAAACACATATACATAACCAAAAAAATCTTTGT  898
      || |||| ||||| |||| ||| | ||| ||||||| |||||||| ||||
seq2  AT-AATG-ATATGGACAC-AACTC-TATTCATAACC-AAAAAATC-TTGT  892

seq1  CTTAAA  904
      ||||||
seq2  CTTAAA  898

seq1: chrX_151765067_151766097
seq2: B6Ng01-063C03.g_66_1090 (reverse)

seq1  CATATACCCACCCCCAAACAAAAACAGGCTACTGTACTATTTTTGTGCCT  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  CATATACCCACTCCCAAACAAAAACAGGCTACTGTACTATTTTTGTGCC-  49

seq1  TTTTCCTCACTGGGTAACATGTATGAAATACCATATTTTACTGATCTCTA  100
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCACT-GGTAACATGTATGAAATACCATATTTTACTGATCTCTA  98

seq1  CTGATAGGCAGGAAACCTATTGCATTTTTCTTTTATGAATACTGCTGGAA  150
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  CTGATAGGCAGGAAA-CTATTGCA-TTTTCTTTTATGAATACTGCTGGAA  146

seq1  GTATCCTATATTCTTATTTTTGTATACATCTCTGTTAACTTCTAGAAGTA  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTATCCTATATTCTTA-TTTTGTATACATCTCTGTTAACTTCTAGAAGTA  195

seq1  GACCTGACAGATTAAAGAGATAATTAGGAGAACAAGCTAACCTCCAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGACAGATTAAAGAGATAATTAGGAGAACAAGCTAACCTCCAACTC  245

seq1  CCAGAGATCTATTCACCTCTGCTTCCCCAGTGCTGGGACTGAAGACAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGATCTATTCACCTCTGCTTCCCCAGTGCTGGGACTGAAGACAGGG  295

seq1  ATCATTATGCCCAGACAGATTGCGGGTTTTTTAAACACACATAAATTATA  350
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATCATTATGCCCAGACAGATTGCGGGTTTTTT-AACACACATAAATTATA  344

seq1  GATAATACTGGATCTCATTATAATAAAAGGATATGGCTTAAGTCTTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATACTGGATCTCATTATAATAAAAGGATATGGCTTAAGTCTTAGAA  394

seq1  TGGATCACGAGACAAAACCTTGGAAGACAGCTAAGGTGCTTGACAGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCACGAGACAAAACCTTGGAAGACAGCTAAGGTGCTTGACAGAGAA  444

seq1  GACCTTGCACTGCTCTGCAAGGCCAAAAAATAAACTCCATTTGAAGCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGCACTGCTCTGCAAGGCCAAAAAATAAACTCCATTTGAAGCAGT  494

seq1  GAGAACTTAGTCATGACCTCAGATCCATCAGTCCTCTGATTTAAGTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTTAGTCATGACCTCAGATCCATCAGTCCTCTGATTTAAGTGTCT  544

seq1  GTAACCTAAAATGACAACACTTGTGGGCTGTTACCCCATGGGAGGGTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTAAAATGACAACACTTGTGGGCTGTTACCCCATGGGAGGGTACT  594

seq1  AACATGGCAGCAGAAACTAAACAAAACCGGAAATACTGATCAGGGGGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGCAGCAGAAACTAAACAAAACCGGAAATACTGATCAGGGGGGTT  644

seq1  GCAGCCCCAGTTCTGGTACTTAATAGAAACCTTGGCTAGTACTAGTATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCCAGTTCTGGTACTTAATAGAAACCTTGGCTAGTACTAGTATAA  694

seq1  AACATTCCTAGTTGATAATATAGCTCCAGATTCTCTTAGAAGAGCACATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCCTAGTTGATAATATAGCTCCAGATTCTCTTAGAAGAGCACATC  744

seq1  TAAATTATTTGGAATGGTATAACTTTATTCTTAGTTGGCATGCTAACTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATTTGGAATGGTATAACTTTATTCTTAGTTGGCATGCTAACTGT  794

seq1  TAATCCTAGAAGGATTTATAATCATTACAAAAATGGTAAAACAAATGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTAGAAGGATTTATAATCATTACAAAAATGGTAAAACAAATGAGA  844

seq1  ATATAGATTTAATATTCATCTATTAATAATCAGGACTTATTTGTTACTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGATTTAATATTCATCTATTAATAATCAGGACTTATTTGTTACTTA  894

seq1  TAATTATAGATCGACAACCAACTGGGCTTTGTTACATATACTTAAAATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATAGATCGACAACCAACTGGGCTTTGTTACATATACTTAAAATTT  944

seq1  TTAATGTGTTTATCAAAAACACCTGTTTTGTATTTATAAGTTTAATAAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTGTTTATCAAAAACACCTGTTTTGTATTTATAAGTTTAATAAAC  994

seq1  TGAACATTGCATTTTAAAATCCAAAGAATTC  1031
      |||||||||||||||||||||||||||||||
seq2  TGAACATTGCATTTTAAAATCCAAAGAATTC  1025