MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-063L24
Chromosome	X (Build37)
Map Location	16,372,754 - 16,373,962
singlet/doublet	singlet
Overlap gene	Maob
Upstream gene	LOC100043949, LOC100043950, Cypt6, LOC100038939, LOC668993, Maoa
Downstream gene	Ndph, LOC100043063, Efhc2, Fundc1, EG278181, EG668994
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100043949 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043949
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC100043950 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043950
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	Cypt6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66742 MGI:3616444
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100038939 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038939
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC668993 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668993
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 22 Proteins pseudo : _no_value

name	Maoa (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17161 MGI:96915
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Maob (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109731 MGI:96916
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ndph (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17986 MGI:102570
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043063 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043063
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Efhc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74405 MGI:1921655
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fundc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72018 MGI:1919268
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG278181 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:278181 MGI:3643718
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 12 Proteins

name	EG668994 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668994 MGI:3645165
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 15 Proteins pseudo : _no_value

name	Cypt6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114842378 GeneID:66742 MGI:3616444
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cysteine-rich perinuclear theca 6 transcript_id : NM_025738.2

name	LOC100038939 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270941 GeneID:100038939
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hypothetical protein LOC100038939, transcript variant 1 transcript_id : XM_001471577.1

name	LOC100038939 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270939 GeneID:100038939
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hypothetical protein LOC100038939, transcript variant 2 transcript_id : XM_001471579.1

name	Maoa (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84579838 GeneID:17161 MGI:96915
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : monoamine oxidase A transcript_id : NM_173740.2

name	Maob (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27370153 GeneID:109731 MGI:96916
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : monoamine oxidase B transcript_id : NM_172778.1

name	Ndph (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:61098076 GeneID:17986 MGI:102570
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Norrie disease homolog transcript_id : NM_010883.2

name	LOC100043063 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270999 GeneID:100043063
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : hypothetical protein LOC100043063 transcript_id : XM_001477606.1

name	Efhc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348726 GeneID:74405 MGI:1921655
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : EF-hand domain (C-terminal) containing 2 transcript_id : NM_028916.2

name	Fundc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381937 GeneID:72018 MGI:1919268
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FUN14 domain containing 1 transcript_id : NM_028058.2

name	EG278181 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271052 GeneID:278181 MGI:3643718
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 12 Proteins product : predicted gene, EG278181 transcript_id : XM_205276.2

name	Cypt6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114842379 GeneID:66742 MGI:3616444
definition	GO_component : GO:0001669 - acrosome [Evidence IDA] codon_start : 1 note : basic protein CKT1R3; cysteine-rich postacrosomal PT protein; cysteine-rich perinuclear theca protein 5; cysteine-rich perinuclear theca protein 1; cysteine-rich perinuclear theca protein 6; cysteine-rich postacrosomal perinuclear theca protein; cysteine-rich perinuclear theca 1 product : cysteine-rich perinuclear theca 5 protein_id : NP_080014.2

name	LOC100038939 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270942 GeneID:100038939
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001471627.1

name	LOC100038939 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270940 GeneID:100038939
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001471629.1

name	Maoa (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84579839 CCDS:CCDS30033.1 GeneID:17161 MGI:96915
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence TAS] [Evidence IDA] GO_function : GO:0008131 - amine oxidase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006584 - catecholamine metabolism [Evidence IEA]; GO:0042420 - dopamine catabolism [Evidence IDA]; GO:0006118 - electron transport [Evidence IEA]; GO:0042135 - neurotransmitter catabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : monoamine oxidase A protein_id : NP_776101.2

name	Maob (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370154 GeneID:109731 MGI:96916
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IDA] codon_start : 1 exception : mismatches in translation product : amine oxidase (flavin-containing) protein_id : NP_766366.1

name	Ndph (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754808 CCDS:CCDS30034.1 GeneID:17986 MGI:102570
definition	GO_process : GO:0001890 - placenta development [Evidence IMP] codon_start : 1 product : Norrie disease homolog protein_id : NP_035013.1

name	LOC100043063 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271000 GeneID:100043063
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477656.1

name	Efhc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037365 GeneID:74405 MGI:1921655
definition	codon_start : 1 exception : mismatches in translation product : EF-hand domain (C-terminal) containing 2 protein_id : NP_083192.1

name	Fundc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312526 CCDS:CCDS30035.1 GeneID:72018 MGI:1919268
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : FUN14 domain containing 1 protein_id : NP_082334.1

name	EG278181 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149271053 GeneID:278181 MGI:3643718
definition	codon_start : 1 product : similar to KIAA0026 protein_id : XP_205276.2

name	LOC100043949 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043949
definition	number : 3 pseudo : _no_value

name	LOC100043949 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043949
definition	number : 2 pseudo : _no_value

name	LOC100043949 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043949
definition	number : 1 pseudo : _no_value

name	LOC100043950 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043950
definition	number : 1 pseudo : _no_value

name	LOC668993 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149270998 GeneID:668993
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 22 Proteins product : similar to casein kinase II alpha subunit pseudo : _no_value transcript_id : XR_033273.1

name	EG668994 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:94407022 GeneID:668994 MGI:3645165
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 15 Proteins product : predicted gene, EG668994 pseudo : _no_value transcript_id : XR_002283.1

clone name	MSMg01-303F07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349N24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-437C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-234F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325D21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-546G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513H05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-425J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-086N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332L07
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-524M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-188G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-170K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-093E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-212A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272E08
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-326J21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-151H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-272E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474A05
singlet/doublet	doublet
plural/unique	plural

clone name	B6Ng01-170G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018H24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151B14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-334N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304K16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257C11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123A02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153N12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-177B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-198A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306G24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147J05
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-063L24.b	B6Ng01-063L24.g
ACC	DH883746	DH883747
length	1,185	1,130
definition	DH883746\|Mus musculus domesticus DNA, BAC clone: B6Ng01-063L24, 5' end.	DH883747\|Mus musculus domesticus DNA, BAC clone: B6Ng01-063L24, 3' end.
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	gaattcctttgaaaggggcttgtaggcttaagatttgtttgagaggaaat ttaaaatgtctttaaaataaaaagcactggtaaattttaagtttccagtg aatagatgtgtgctttaagatgtttcagtgcctttttatagaaaaatgaa caaaacgtactgactcttagattttaaaccagtcttcacactaatttact ttaatatacaaaattatggcacttttccccaacatttttaaaaagaaggt acataaataccttaatggcattgacaaatgatatttgcaggcaaatttaa agttatagtttatttaaacttgctgttaaaaataatcacagcttcatgtg atgaacaagcccaatgcatgtgcagaaggtgataacaatggtgtctgtgt ggcatttctaagggacacatatggtatttgtgtacataagaaaaacaata ttaattttattcctgaaaaatataattttttctagatagtggcatttttt taatagtttataaatgaattgtagaaagtaagaaagacaaaggatggaaa cacagattgggaagacctaattacctcacaaaattgttgagctgaatatt agttcctctttctttggtgtctgaagcctatggccctttgcaatacagga ctgtgtggagtgggctgtataaacggctatttagcaaatgttattttcta aagtagttcccacagtcaaaaaaaaaaaaaaggacctccagcttcatttt ctatatattcactgggcactggaaaaaaatcacttcttgtcacctgcctc tatccccatgatagcggttttctgcttcctcttgtaaattctagataccc cttcaatctgctttgccaacttgctttctcctcttacttttcctaattgc tttgctattagaatttcctgattgggcatcaggatcaacttcagggcagt tttcaagccagagcttgctttttgctatatcctaggtctgacccaggtct caatggcaagccaatctcctgtttgttgtgcactgaagtagaattctggc tctctatgtctggtattgctggtggattctatttcttctgcacctctcta agcaacccaataggcacgatggcttgtatcccaatgggacggtcattgag tgactgactgggagcactgaacacacagtgcacta	gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt gagtttgtttttataatggattacattgatggattttcgtatattaaacc atccctgcatccctggaataaaacctacttggtcaggatggatgattgct ttaatctgtttttggattcggttagcgagaattttattgaggatttttgc atcgatattcataagagaaattggtctgaagttctctatctttgttgggt ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg gtcctgggctttttttggctgggagactgttaataactgcttctatttct ttaggtgatatgggactgttgagatggtcaacttgatcctgattcaactt tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat taggattttgtccctgtgccctttagtgagtctagctaaggtttatctat cttgttgattttctcaagaaccaactcctcgtttggttaattctttgaat agttcttcttgtttccacttggttgatttcacccctgagtttgattattt cctgccgtctactctctgggtgaatttgcttccttttttttctagagctt tagatgtgtgtcagctgctagtatgtgctcttctccgtttcttctgagca ctcagaagctatgagttccctcttagaatgcttcattggtcccataagtt ggttgtgagccttcattcattaatcaagtcttaatccttcttatcctctg acaggtcttggaaagagggtgtagtcacggagttgtcagttcaccggaag gttattgaagatactctaagccatgcgcta
quality values	Open. Hide. 47 28 22 36 61 61 61 61 61 61 61 43 47 53 61 61 61 47 43 61 61 61 61 61 55 11 12 12 10 12 9 8 14 12 17 22 35 49 61 55 30 55 55 55 61 61 61 61 61 49 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 28 33 24 21 19 26 26 22 41 55 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 59 61 61 59 61 59 61 61 61 61 61 61 61 61 61 61 61 59 61 59 61 61 59 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 55 59 61 61 59 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 55 59 61 61 61 61 61 61 55 55 59 61 61 61 59 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 47 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 37 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 47 47 61 61 61 61 61 57 46 57 57 57 57 57 53 57 57 53 53 57 53 53 57 53 57 57 57 57 53 53 57 57 57 57 57 53 57 53 46 53 57 53 57 53 47 57 57 57 57 53 57 34 47 53 47 47 47 57 57 57 57 57 57 53 52 36 57 53 53 57 53 52 47 46 53 53 52 53 52 53 57 57 52 45 53 57 52 53 50 57 33 53 53 50 57 53 52 50 52 43 52 41 53 53 50 43 46 45 46 46 41 53 40 57 53 57 43 47 57 50 53 53 53 53 53 34 52 46 47 50 37 39 52 25 33 38 52 53 50 47 47 21 50 53 33 50 53 33 57 31 27 46 53 42 53 52 53 57 40 24 36 47 57 53 42 42 53 37 36 37 46 39 53 47 53 57 40 47 41 52 57 41 32 36 47 37 53 53 33 37 30 44 37 37 34 34 46 40 36 30 57 57 37 29 32 30 41 40 20 22 25 20 25 33 34 33 29 12 57 57 57 57 51 51 51 51 51 51 51 51 37 25 38 30 16 30 30 29 30 27 32 41 35 31 31 25 34 51 51 27 30 28 32 29 29 27 29 29 38 34 27 35 29 29 51 47 27 28 34 32 31 21 35 51 39 36 46 51 29 28 29 28 29 25 29 29 28 29 39 18 18 21 29 31 26 29 23 27 29 27 28 30 35 23 39 36 28 19 27 28 29 19 28 18 33 29 39 29 51 51 32 28 26 28 28 29 28 29 28 17 26 19 33 41 21 25 51 38 29 28 26 17 29 23 43 20 20 32 36 32 22 16 15 25 20 26 27 29 28 33 25 28 46 29 19 16 22 25 24 22 30 29 29 30 38 41 14 6 7 8 5 20 17 9 29 20 21 29 51 51 28 21 18 16 19 31 15 22 29 20 27 51 23 11 19 17 17 6 30 32 8 33 36 28 51 27 23 19 27 33 34 18 15 33 51 28 26 19 26 23 20 29 14 36 11 18 19 21 31 21 28 17 23 21 35 8 28 12 10 24 44 44 22 25 19 20 27 20 8 22 7 29 14 31 6 11 17 13 28 44 44 44 20 7 16 10 14 4 4 17 13 12 24 19 10 26 6 7 15 16 29 8 4 4 4 9 19 11 12 17 12 13 19 26 17 21 8 13 31 20 7 21 6 13 25 9 7 7 29 10 12 10 37 12 10 5 5 7 5 4 7 11 13 24 22 15 21 13 12 16 4 6 8 9 9 5 4 6 13 6 7 6 8 4 2 2 5 14 8 5 3 8 15 4 10 7 15 7 12 5 11 9 10 3 5 11 7 11 3 1 4 13 20 6 8 6 6 8 3 6 10 15 9 10 6 4 5 4 2 4 5 6 17 2 2 3 5 2 4 3 3 3 3 5 3 2 2 3 10 3 5 4 4 1 6 17 4 12 7 17 23 7 3 5 7 19 9 6 4 5 5 4 6 16 10 13 13 3 3 3 11 8 3 3 5 6 16 16 4 5 12 13 7 3 2 3 4 2 2 3 7 4 4 6 4 8 3 3 1 8 8 6 6 4 4	Open. Hide. 61 47 43 38 61 55 55 47 55 61 61 61 61 61 61 61 40 15 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 59 61 61 61 61 61 61 61 61 61 61 61 59 61 61 55 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 52 61 55 55 55 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 53 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 53 61 53 61 61 61 61 61 61 53 61 61 61 61 61 61 61 61 53 61 61 61 61 61 61 61 61 61 61 61 61 61 61 53 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 52 61 61 57 53 53 42 51 53 57 57 57 53 47 57 53 53 53 57 57 57 57 57 57 53 53 52 52 57 53 46 57 57 47 53 37 42 53 57 53 42 53 57 57 57 53 53 52 57 57 53 57 57 57 45 47 33 57 53 43 53 50 57 53 57 57 57 38 53 47 57 43 57 52 28 53 50 33 57 53 57 57 53 41 52 50 38 38 53 53 57 47 52 53 50 50 57 52 45 47 46 42 50 57 57 50 45 41 57 47 45 43 27 28 53 57 39 41 38 45 39 47 30 47 53 42 57 41 46 36 46 28 50 53 41 41 47 52 37 57 36 53 36 50 40 53 47 37 50 52 28 53 57 37 46 34 42 26 52 52 9 57 31 30 37 42 53 52 32 53 46 24 52 24 57 57 32 53 53 40 29 57 33 37 31 38 32 28 8 30 40 44 40 36 57 24 41 43 22 41 37 41 53 37 41 33 29 57 44 35 57 57 32 33 28 53 57 44 40 32 30 44 17 57 57 30 41 15 40 46 29 35 33 22 14 12 29 13 46 46 45 44 29 30 36 20 24 41 30 34 25 26 15 30 31 32 29 25 29 29 29 27 29 25 29 35 33 33 36 30 6 12 13 28 46 31 28 28 29 28 24 29 29 28 25 45 15 21 24 29 31 51 51 29 29 29 29 26 17 16 31 27 15 24 27 34 38 33 28 32 18 30 20 24 39 25 25 30 13 22 29 21 21 34 29 23 39 29 29 39 19 25 29 21 26 23 29 22 20 29 23 19 41 28 46 29 28 28 20 30 27 23 19 30 17 26 28 29 27 41 26 29 27 33 41 36 25 21 28 33 15 28 36 25 15 29 9 25 35 23 51 32 16 27 28 35 22 32 24 28 35 26 24 23 19 24 18 16 20 6 28 22 17 28 25 24 26 38 18 14 25 27 32 18 24 30 51 51 51 51 51 51 18 19 17 20 8 28 20 25 29 51 31 18 13 28 17 28 13 9 30 10 11 9 28 17 31 34 28 19 28 31 22 9 8 8 19 11 10 9 16 5 5 4 5 15 28 29 9 16 31 12 28 16 18 9 6 8 8 5 6 7 6 6 16 10 9 22 17 7 18 21 18 8 9 21 7 29 10 8 20 7 8 18 13 30 17 15 29 29 6 28 19 28 20 16 13 11 4 4 5 8 10 20 22 10 5 4 5 19 9 6 9 3 2 2 7 18 8 3 5 10 15 23 11 12 4 16 9 5 8 25 7 10 13 3 4 13 16 7 3 5 11 17 9 5 20 4 4 19 4 4 8 11 9 27 13 10 12 19 11 12 10 16 15 8 5 5 5 4 15 7 7 11 19 15 7 10 8 17 4 5 4 4 3 3 6 3 5 4 3 4 5 4 3 3 4 5 7 10 8 18 12 10 8 11 4 9 4 15 8 4 1 4 9 7 8 17 4 10 12 7 14 4 6 4 4 6 14 4 3 4 11 12 3 3 10 3 6 3 3 1

Alignment Information

BAC End 1

BAC End 2

seq1: chrX_16372754_16373962
seq2: B6Ng01-063L24.b_44_1228 (reverse)

seq1  TAGTGCACTGTGTGTCTAGTGCATCCAGTCATGTCAATCATAAATTGACA  50
      |||||||||||||||  |||||  ||||||| |||| ||    | |||| 
seq2  TAGTGCACTGTGTGTTCAGTGCTCCCAGTCA-GTCACTC----AATGAC-  44

seq1  GCTGCCCATGGGGGTATCAGGCCCATCTGTGGCCTATTTTGAGTATGGCT  100
       |  ||||| ||| ||  ||  ||||| || |||||||    |  | |||
seq2  -CGTCCCATTGGGATACAAG--CCATC-GT-GCCTATT----GGGTTGCT  85

seq1  ATGAGAGGTTGCAGAAGGAATAGAAATCCAACAGGCAAATACCAGACATA  150
        |||||| |||||||| ||||| |||||| |||   |||||||||||||
seq2  TAGAGAGG-TGCAGAAGAAATAG-AATCCACCAG--CAATACCAGACATA  131

seq1  GAGAGCAAGAATCTCTACTTCAGTGCAC-ACAAACAGGAGATGGGCTTTG  199
      |||||| ||||| ||||||||||||||| ||||||||||||| ||| |||
seq2  GAGAGCCAGAAT-TCTACTTCAGTGCACAACAAACAGGAGATTGGC-TTG  179

seq1  CCATTGAGACCTGTGTCAGACCTAGGATATTAGCAAAAAAGCAAGGCTCT  249
      ||||||||||||| ||||||||||||||| |||| ||||||||| |||| 
seq2  CCATTGAGACCTGGGTCAGACCTAGGATA-TAGC-AAAAAGCAA-GCTC-  225

seq1  TGGCTTGAAAACTGGCCTGAAGTTGATTCCTGATGCCCAATCAGGAAATT  299
      |||||||||||||| ||||||||||| |||||||||||||||||||||||
seq2  TGGCTTGAAAACTGCCCTGAAGTTGA-TCCTGATGCCCAATCAGGAAATT  274

seq1  CTAATAGCAAAGCAATTAGGAAAAGTAAGAGGAGAAAGCAAGTTGGCAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGCAAAGCAATTAGGAAAAGTAAGAGGAGAAAGCAAGTTGGCAAA  324

seq1  GCAGATTGAAGGGGTATCTAGAATTTACAAGAGGAAGCAGAAAACCGCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTGAAGGGGTATCTAGAATTTACAAGAGGAAGCAGAAAACCGCTA  374

seq1  TCATGGGGATAGAGGCAGGTGACAAGAAGTGATTTTTTTCCAGTGCCCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGGATAGAGGCAGGTGACAAGAAGTGATTTTTTTCCAGTGCCCAG  424

seq1  TGAATATATAGAAAATGAAGCTGGAGGTCC-TTTTTTTTTTTTTGACTGT  498
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGAATATATAGAAAATGAAGCTGGAGGTCCTTTTTTTTTTTTTTGACTGT  474

seq1  GGGAACTACTTTAGAAAATAACATTTGCTAAATAGCCGTTTATACAGCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTACTTTAGAAAATAACATTTGCTAAATAGCCGTTTATACAGCCC  524

seq1  ACTCCACACAGTCCTGTATTGCAAAGGGCCATAGGCTTCAGACACCAAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACACAGTCCTGTATTGCAAAGGGCCATAGGCTTCAGACACCAAAG  574

seq1  AAAGAGGAACTAATATTCAGCTCAACAATTTTGTGAGGTAATTAGGTCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGAACTAATATTCAGCTCAACAATTTTGTGAGGTAATTAGGTCTT  624

seq1  CCCAATCTGTGTTTCCATCCTTTGTCTTTCTTACTTTCTACAATTCATTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATCTGTGTTTCCATCCTTTGTCTTTCTTACTTTCTACAATTCATTT  674

seq1  ATAAACTATTAAAAAAATGCCACTATCTAGAAAAAATTATATTTTTCAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTATTAAAAAAATGCCACTATCTAGAAAAAATTATATTTTTCAGG  724

seq1  AATAAAATTAATATTGTTTTTCTTATGTACACAAATACCATATGTGTCCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATTAATATTGTTTTTCTTATGTACACAAATACCATATGTGTCCC  774

seq1  TTAGAAATGCCACACAGACACCATTGTTATCACCTTCTGCACATGCATTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATGCCACACAGACACCATTGTTATCACCTTCTGCACATGCATTG  824

seq1  GGCTTGTTCATCACATGAAGCTGTGATTATTTTTAACAGCAAGTTTAAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTTCATCACATGAAGCTGTGATTATTTTTAACAGCAAGTTTAAAT  874

seq1  AAACTATAACTTTAAATTTGCCTGCAAATATCATTTGTCAATGCCATTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATAACTTTAAATTTGCCTGCAAATATCATTTGTCAATGCCATTAA  924

seq1  GGTATTTATGTACCTTCTTTTTAAAAATGTTGGGGAAAAGTGCCATAATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTATGTACCTTCTTTTTAAAAATGTTGGGGAAAAGTGCCATAATT  974

seq1  TTGTATATTAAAGTAAATTAGTGTGAAGACTGGTTTAAAATCTAAGAGTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATTAAAGTAAATTAGTGTGAAGACTGGTTTAAAATCTAAGAGTC  1024

seq1  AGTACGTTTTGTTCATTTTTCTATAAAAAGGCACTGAAACATCTTAAAGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACGTTTTGTTCATTTTTCTATAAAAAGGCACTGAAACATCTTAAAGC  1074

seq1  ACACATCTATTCACTGGAAACTTAAAATTTACCAGTGCTTTTTATTTTAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCTATTCACTGGAAACTTAAAATTTACCAGTGCTTTTTATTTTAA  1124

seq1  AGACATTTTAAATTTCCTCTCAAACAAATCTTAAGCCTACAAGCCCCTTT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTTAAATTTCCTCTCAAACAAATCTTAAGCCTACAAGCCCCTTT  1174

seq1  CAAAGGAATTC  1209
      |||||||||||
seq2  CAAAGGAATTC  1185

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information