BAC Information

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BAC

Clone NameB6Ng01-065L05
ChromosomeX (Build37)9 (Build37)
Map Location 117,063,464 - 117,063,69781,137,591 - 81,138,479
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC385417, Pabpc5
Downstream geneLOC236983, LOC674318, EG545741, LOC100039461, Pcdh11x, H2afb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065L05.bB6Ng01-065L05.g
ACCDH885097DH885098
length7171,084
definitionDH885097|Mus musculus domesticus DNA, BAC clone: B6Ng01-065L05, 5' end.DH885098|Mus musculus domesticus DNA, BAC clone: B6Ng01-065L05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(117,063,464 - 117,063,697)(81,137,591 - 81,138,479)
sequence
gaattctctgtggtactgaggagaaggaatgtacttttgtgtttggatga
aagtttctgtaggtgtctattaggtacatttggttcataacaactgttag
tttcattatttctctttttgctttctgatttgatgacctgtccattggtg
agagtggagtgttgaagtcccacattattactgtgtgacgtttgatattc
aatgtgtgatgtaagctttaatactgttttgggtttttgtattgcttttg
tttttgttgttttgtttgttttgttttgttttgttttgtcagaatgtggt
gccctttacatttgctgcattgatgtttagaattaagatgtcatcttagt
ggattttttatttgatgagtatgtagtgcccttccacatttcttttgatt
actttttttcagaatctattttattgcatattagaatggttacttcagct
tttgttttttgttcatttgcttggaaaacccattcccatccctttactct
gacatcgtttctatatttcttgctgaggtgtttttcttccatacagcaga
atgatgatggttcctgcttatatacccaatttgttattctgtgtcttttt
attgggggaattgagtcaatcattgttgaaagatatttatgaccaatgac
tgttagttcctgttattttttatgttgttggtggttctctctctctctct
ctctctctctctctctc
gaattctttgtttagctctgtgccccatttttaattgggttatttggttc
tatggagtctatcttcttgatatctttgtatatattgattattagccctc
tctctgatgtaggattggtaaaaatctttcccaatttgtaggttgccttt
gaaaactattctcaacaataaaagaacttctgggggaattatcattccag
acctcaagctgtactacagagcaatagtaattaatactgcatggtattgg
taagcgacaggcaggtggatcaatggaatagaaatgaagactcagaactg
aacccacactcctacagtcacttgatttttgagaaaggagctgaaactat
ccagtggaaaaaaagccttttcaacaaatggtgatgattcaacaggccat
caccatgcagaagaatgcgaatttatccattcttatctccttgtacaaag
ctcaagcccaagtggatcaagaaccttcacataaaaccagatacactaaa
actaataaaaagaaagtggggaagagcttccagcacaggggcacagagga
atatttcctgagcagaacaccaatagggtatgctctaagatcaagaatgg
acaaatggggcctcataaaattacaaagcttctgtaaggcaaaggacaca
atttgtcaataggacaaaatggtacctacccaacagattgggcaaaagta
cttctcaaagcatcactcacctaacttcttaaagaaacaaaaatgtttaa
atatctttatcaacaatgtaatttgcatggatacattttttggtaagatg
tcaaaaatgcttcttatgctgtttaagattctctaattatacatagaaat
agagatagagagccaaaatagccaacatatgcttattgaggcttattctc
ctactgtttttcatacgtgtacacgtttgatggaagatctaattgtttcc
actgactttgatatcctgtatgaaattccagaaatatattgtttaaaatc
aagtaaacttgtttttctggtgtgaattacattttgacttgtatatcaag
gcagggatttttactacagtttctggtcactgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_117063464_117063697
seq2: B6Ng01-065L05.b_292_763 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCAGTGGTGGCTCATGC  50
      ||||||||||||||||||||||||||||||||| ||       |  |   
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCA-------CCAACAA  43

seq1  CTT---TAATCCCAACACTTGGGAGGCAGT-GTCAGGCAGATTT-----C  91
      | |    |||  ||  |  |   || || | ||||   | || |     |
seq2  CATAAAAAATAACAGGAACTAACAGTCATTGGTCATAAATATCTTTCAAC  93

seq1  TAAGTTTGAGGCCAGCCTGGTCTACAA-ACTGAGTTCCAGGACAGCCA--  138
       | | ||||  | |  |    |  ||| |   ||   ||| | | | |  
seq2  AATGATTGACTCAATTC----CCCCAATAAAAAGACACAGAATAACAAAT  139

seq1  --GGGCTATAAAGAGAAACC------------CTGTCT--CAGAAAAAAA  172
        ||  |||||  || ||||            |||| |   ||||||| |
seq2  TGGGTATATAAGCAGGAACCATCATCATTCTGCTGTATGGAAGAAAAACA  189

seq1  -------AATAAACAAAAAAAC-----------AAA--------------  190
             || ||| | | ||||           |||              
seq2  CCTCAGCAAGAAATATAGAAACGATGTCAGAGTAAAGGGATGGGAATGGG  239

seq1  ------AAACAA--CAACAAAAAACAAAA--------AACAAAACAAAAC  224
            || |||   ||||||||||||||        ||| |  | ||  
seq2  TTTTCCAAGCAAATGAACAAAAAACAAAAGCTGAAGTAACCATTCTAATA  289

seq1  AACAACAAAA----------------------------------------  234
        ||| ||||                                        
seq2  TGCAATAAAATAGATTCTGAAAAAAAGTAATCAAAAGAAATGTGGAAGGG  339

seq1  --------------------------------------------------  234
                                                        
seq2  CACTACATACTCATCAAATAAAAAATCCACTAAGATGACATCTTAATTCT  389

seq1  --------------------------------------------------  234
                                                        
seq2  AAACATCAATGCAGCAAATGTAAAGGGCACCACATTCTGACAAAACAAAA  439

seq1  ---------------------------------  234
                                       
seq2  CAAAACAAAACAAACAAAACAACAAAAACAAAA  472

seq1: chr9_81137591_81138479
seq2: B6Ng01-065L05.g_274_1152

seq1  AAGCTGTACTACAGAGCAATAGTAATTAATACTGCATGGTATTGGTAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTACTACAGAGCAATAGTAATTAATACTGCATGGTATTGGTAAGC  50

seq1  GACAGGCAGGTGGATCAATGGAATAGAAATGAAGACTCAGAACTGAACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCAGGTGGATCAATGGAATAGAAATGAAGACTCAGAACTGAACCC  100

seq1  ACACTCCTACAGTCACTTGATTTTTGAGAAAGGAGCTGAAACTATCCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCTACAGTCACTTGATTTTTGAGAAAGGAGCTGAAACTATCCAGT  150

seq1  GGAAAAAAAGCCTTTTCAACAAATGGTGATGATTCAACAGGCCATCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAGCCTTTTCAACAAATGGTGATGATTCAACAGGCCATCACCA  200

seq1  TGCAGAAGAATGCGAATTTATCCATTCTTATCTCCTTGTACAAAGCTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAGAATGCGAATTTATCCATTCTTATCTCCTTGTACAAAGCTCAA  250

seq1  GCCCAAGTGGATCAAGAACCTTCACATAAAACCAGATACACTAAAACTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGTGGATCAAGAACCTTCACATAAAACCAGATACACTAAAACTAA  300

seq1  TAAAAAGAAAGTGGGGAAGAGCTTCCAGCACAGGGGCACAGAGGAATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAAAGTGGGGAAGAGCTTCCAGCACAGGGGCACAGAGGAATATT  350

seq1  TCCTGAGCAGAACACCAATAGGGTATGCTCTAAGATCAAGAATGGACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGCAGAACACCAATAGGGTATGCTCTAAGATCAAGAATGGACAAA  400

seq1  TGGGGCCTCATAAAATTACAAAGCTTCTGTAAGGCAAAGGACACAATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCTCATAAAATTACAAAGCTTCTGTAAGGCAAAGGACACAATTTG  450

seq1  TCAATAGGACAAAATGGTACCTACCCAACAGATTGGGCAAAAGTACTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGGACAAAATGGTACCTACCCAACAGATTGGGCAAAAGTACTTCT  500

seq1  CAAAGCATCACTCACCTAACTTCTTAAAGAAACAAAAATGTTTAAATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATCACTCACCTAACTTCTTAAAGAAACAAAAATGTTTAAATATC  550

seq1  TTTATCAACAATGTAATTTGCATGGATACA-TTTTTGGTAAGATGTCAAA  599
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTATCAACAATGTAATTTGCATGGATACATTTTTTGGTAAGATGTCAAA  600

seq1  AATGCTTCTTATGCTGTTTAAGATTCTCTAATTATACATAGAAATAGAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTCTTATGCTGTTTAAGATTCTCTAATTATACATAGAAATAGAGA  650

seq1  TAGAGAGCCAAAATAGCCAACATATGCTTATTGGAGGCTTATTCTCCTAC  699
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAGAGAGCCAAAATAGCCAACATATGCTTATT-GAGGCTTATTCTCCTAC  699

seq1  TGGTTTTTCATACGTGTACACGTTTGATGGAAGATCTAATTGTTTCCACT  749
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-GTTTTTCATACGTGTACACGTTTGATGGAAGATCTAATTGTTTCCACT  748

seq1  GACTTTTGATATCCTGGTAATGAAATTTCAAGAAATATA-TGTTTATAAT  798
      ||| ||||||||||||   |||||| ||| ||||||||| |||||| |||
seq2  GAC-TTTGATATCCTG--TATGAAA-TTCCAGAAATATATTGTTTAAAAT  794

seq1  CAAGTAAACTTGTATTTTCTTGTGTGAATTACATTTTGACTTGTATATCA  848
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  CAAGTAAACTTGT-TTTTCTGGTGTGAATTACATTTTGACTTGTATATCA  843

seq1  TAGTCAAGGGATTTTTACCTACAGTTTTCTGGGTCACTGTA  889
       || | ||||||||||| |||||| ||||| ||||||||||
seq2  -AGGC-AGGGATTTTTA-CTACAG-TTTCT-GGTCACTGTA  879