BAC Information

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BAC

Clone NameB6Ng01-066J04
ChromosomeX (Build37)
Map Location 144,324,117 - 144,544,096
singlet/doubletdoublet
Overlap geneEG624023, LOC666184, LOC100039511, LOC666812
Upstream geneEG245663, Htr2c, Il13ra2, V1rb10, Lrch2, LOC100039462, LOC666789, LOC434863, EG623995
Downstream geneLOC100039519, LOC434864, EG624096, LOC100039545, LOC666837, LOC100039553, LOC100034729, LOC666861, EG666864, LOC434866, EG666868, EG624260, LOC434865, EG624310, Ott
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066J04.bB6Ng01-066J04.g
ACCDH885716DH885717
length1,0861,088
definitionDH885716|Mus musculus domesticus DNA, BAC clone: B6Ng01-066J04, 5' end.DH885717|Mus musculus domesticus DNA, BAC clone: B6Ng01-066J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,324,117 - 144,325,215)(144,542,997 - 144,544,096)
sequence
gaattcagcatagcagcacactattggcttattcaaacatgagcagaaaa
attacatgtacgtgcagggtctcagagatctgtgacttattgactcagtt
tagatagacctgttatgtcctcatattcctctttatatttaaggttaagc
tgttcccaggaatggtttaactaaggggcatatccgggttggttttactt
tttttctcaccaccaggcagcctctaggctcacaaactactagcaatttc
tgagttctttgcatgacttacaggtcttaaaatttcatctttctttcaat
cctatttttttctcacctctgacaccatatagttaagaacattatttcaa
acaacaaggattgattcccagcacattgctcacaaccatgaattccagga
gaactgagccctcttctggattgcacaggcatcaggcacacacttgagtc
acaggaaacagggaggtaaaataaccaaaaagatgaactgagaaatcaaa
atgaaaagaaataaaacaaattgagattagtgtgaacagaattatttaga
gcccgttagtaatgatcaggatttccctagtatacaacagagaatacatt
taaggagctgggtgaaaagcatgtggcatgatgaagttcttccaggtttt
ccatcccagcggttgaactttgtgaaaatgcccctcgggagcagagtagc
aggcatgtgaagatagctgctttccccgcccctcacttgggattggaggc
atggtgtggcctggcataggcagaagtctggccaatgagcctctgcaaca
gtgcagaaagcacagtgattggaggacgcctttagggaagtgttgagagc
ctctgactggtcggggaagacacacctcagcaagtggatctctgtgcttt
gagtggctgggactcccacagggttttcaacctgatggcgaaccgtgagg
gaacccattctctttagtttgagagtagcagcgcgacccctctcctgctc
aggtctcactggtcagaaaggatgttgactggagacctctgcataacagg
cagctcaatgctcctgggagttgtggaggttccaga
gaattcagaatgtgagtcaaatcaatcccttcactccagaactggtgccc
aatttcataaaccctgtcaatggcaccaacagccagcatcttatggtagg
gttctggagcaattctcatacataagttcattttcctgctcattgtgata
ggtgatgaaaggcttggctgaagctcccccagggatgatgctcatcatgg
gagttccaaagtccagggatcccagctcatctaagaaacttcttatatct
gtgattatctttagagaagatgacaaatttctatctcacaaactccttca
gtatcaagcccaaatatctctgaagagaccttatttccttgtctttgaag
gccaaaatgaagctgaggcacatgtgcaagcagagggacagaagtgtgat
ctcctgggggatggtgctcagcttgtccttcttggttttccctggattac
cctcaactctaattatatctccctgatgcagtttttattgagatgcacac
attcttcctctgatttataattcctggagttggccatgacttgtaacttg
acctcctctcctcaaaggtcatagaagatgaattttccccagacactctc
ttggatgtgacctgccacttatgttgttagtcaggtgatccccaggctgc
aggtgactgtattcttgaatgaaccgagtgaatgagatgtccacatggta
cttgggtgggtatgagtcctctgtactgaacttcagctgctggactttgg
atcctgtaatattgatttgggtccagagtctcctcctcagcacccacacc
aatgtcagcagtggggtttggtggtgacagcacagtagtcttgttagctg
tttctcattgagctctttcacttggcctttctcttcaagtttcttctcag
ctttcaagtgcctctttcagctcattttttgcttattttaacttcaacat
ccacttttgactttactctctgcgtggtggcctattccccactctgtttc
tccttttgaaagcttttgatggctcctagcttgtgcagaaatgcatgtaa
aaactatgtgtgaaaaggttatttctatactgtatgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_144324117_144325215
seq2: B6Ng01-066J04.b_44_1129

seq1  GAATTCAGCATAGCAGCACACTATTGGCTTATTCAAACATGAGCAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATAGCAGCACACTATTGGCTTATTCAAACATGAGCAGAAAA  50

seq1  ATTACATGTACGTGCAGGGTCTCAGAGATCTGTGACTTATTGACTCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGTACGTGCAGGGTCTCAGAGATCTGTGACTTATTGACTCAGTT  100

seq1  TAGATAGACCTGTTATGTCCTCATATTCCTCTTTATATTTAAGGTTAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGACCTGTTATGTCCTCATATTCCTCTTTATATTTAAGGTTAAGC  150

seq1  TGTTCCCAGGAATGGTTTAACTAAGGGGCATATCCGGGTTGGTTTTACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCAGGAATGGTTTAACTAAGGGGCATATCCGGGTTGGTTTTACTT  200

seq1  TTTTTCTCACCACCAGGCAGCCTCTAGGCTCACAAACTACTAGCAATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCACCACCAGGCAGCCTCTAGGCTCACAAACTACTAGCAATTTC  250

seq1  TGAGTTCTTTGCATGACTTACAGGTCTTAAAATTTCATCTTTCTTTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTTTGCATGACTTACAGGTCTTAAAATTTCATCTTTCTTTCAAT  300

seq1  CCTATTTTTTTCTCACCTCTGACACCATATAGTTAAGAACATTATTTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTTTTTCTCACCTCTGACACCATATAGTTAAGAACATTATTTCAA  350

seq1  ACAACAAGGATTGATTCCCAGCACATTGCTCACAACCATGAATTCCAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAGGATTGATTCCCAGCACATTGCTCACAACCATGAATTCCAGGA  400

seq1  GAACTGAGCCCTCTTCTGGATTGCACAGGCATCAGGCACACACTTGAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAGCCCTCTTCTGGATTGCACAGGCATCAGGCACACACTTGAGTC  450

seq1  ACAGGAAACAGGGAGGTAAAATAACCAAAAAGATGAACTGAGAAATCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAACAGGGAGGTAAAATAACCAAAAAGATGAACTGAGAAATCAAA  500

seq1  ATGAAAAGAAATAAAACAAATTGAGATTAGTGTGAACAGAATTATTTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGAAATAAAACAAATTGAGATTAGTGTGAACAGAATTATTTAGA  550

seq1  GCCCGTTAGTAATGATCAGGATTTCCCTAGTATACAACAGAGAATACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTTAGTAATGATCAGGATTTCCCTAGTATACAACAGAGAATACATT  600

seq1  TAAGGAGCTGGGTGAAAAGCATGTGGCATGATGAAGTTCTTCCAGGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGCTGGGTGAAAAGCATGTGGCATGATGAAGTTCTTCCAGGTTTT  650

seq1  CCATCCCAGCGGTTGAACTTTGTGAAAATGCCCCTCGGGAGCAGAGTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCAGCGGTTGAACTTTGTGAAAATGCCCCTCGGGAGCAGAGTAGC  700

seq1  AGGCATGTGAAGATAGCTGCTTTCCCCGCCCCTCACTTGGGATTGGAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGTGAAGATAGCTGCTTTCCCCGCCCCTCACTTGGGATTGGAGGC  750

seq1  ATGGTGTGGCCTGGCATAGGCAGAAGTCTGGCCAATGAGCCTCTGCAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTGGCCTGGCATAGGCAGAAGTCTGGCCAATGAGCCTCTGCAACA  800

seq1  GTGCAGAAAGCACAGTGATTGGAGGACGCCTTTAGGGAAGTGTTGAGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAAAGCACAGTGATTGGAGGACGCCTTTAGGGAAGTGTTGAGAGC  850

seq1  CTCTGACTGGTCGGGGAAGACACACCTCAGCAAGTGGATCTCTGTGCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACTGGTCGGGGAAGACACACCTCAGCAAGTGGATCTCTGTGCTTT  900

seq1  GAGGTGGCTGGGACTCCCACAGGGTGTGTCAACCTGATGGCGAACCGTGA  950
      || |||||||||||||||||||||| | ||||||||||||||||||||| 
seq2  GA-GTGGCTGGGACTCCCACAGGGT-TTTCAACCTGATGGCGAACCGTG-  947

seq1  AGGTAACCAATTCTCTTTAGTTTGAGAGTAGCAGCGCGACCCCTCTCCCT  1000
      ||| |||| ||||||||||||||||||||||||||||||||||||| |||
seq2  AGGGAACCCATTCTCTTTAGTTTGAGAGTAGCAGCGCGACCCCTCT-CCT  996

seq1  GCTCAGGGTTCTCACTGGTCAGAAAAGGATGTTGACTGGGAGACCTCTGC  1050
      |||||||  ||||||||||||| |||||||||||||| ||||||||||||
seq2  GCTCAGG--TCTCACTGGTCAG-AAAGGATGTTGACT-GGAGACCTCTGC  1042

seq1  ATAAACCAGGCAGCTCAAAATGACATCT-GGAGTTGTGGAGGTTTCCAGA  1099
      ||||  ||||||||||  |||| |  || ||||||||||||| |||||||
seq2  ATAA--CAGGCAGCTC--AATG-CTCCTGGGAGTTGTGGAGG-TTCCAGA  1086

seq1: chrX_144542997_144544096
seq2: B6Ng01-066J04.g_69_1156 (reverse)

seq1  GGCATAACAGTAATAGGAAATAAACATTTTCACAACATAAGTTTTTACAT  50
      ||||| ||||| ||| ||||| ||| ||||||| |||| |||||||||||
seq2  GGCAT-ACAGT-ATA-GAAAT-AACCTTTTCAC-ACAT-AGTTTTTACAT  44

seq1  GCAATTATGGCAAAGACTAGGAGGCAATAAAAAGACTTTCAAAAGTGAGA  100
      ||| || | ||| |  |||||| || || ||||| |||||||||| ||||
seq2  GCATTTCT-GCACAAGCTAGGA-GCCATCAAAAG-CTTTCAAAAG-GAGA  90

seq1  ATACAGAGTGGGGGAAATGGCCACACTGCAGGAGAGTAAAGTC-AAAGTG  149
      | ||||||| ||||||  ||||||   ||| |||||||||||| ||||||
seq2  A-ACAGAGT-GGGGAATAGGCCACCACGCA-GAGAGTAAAGTCAAAAGTG  137

seq1  GATGTTGAGTTGAAATTAAGC-AAAAATGAGCTG-AAGAGGCACCTGAAA  197
      ||||||||  | ||| ||||| |||||||||||| ||||||||| |||||
seq2  GATGTTGAAGTTAAAATAAGCAAAAAATGAGCTGAAAGAGGCACTTGAAA  187

seq1  GCTGAGAAGAAACTGGAAGAGAAAGGCCAAGTGGAAAGAGCTCAATGAGA  247
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  GCTGAGAAGAAACTTGAAGAGAAAGGCCAAGT-GAAAGAGCTCAATGAGA  236

seq1  AACAGCTAAACAAGACTACTGCTGCTGTCACCACC-AACCCCACTGCTGA  296
      ||||||| ||||||||||||| ||||||||||||| ||||||||||||||
seq2  AACAGCT-AACAAGACTACTG-TGCTGTCACCACCAAACCCCACTGCTGA  284

seq1  CATTGGTGTGGGTGCTGAGGAGGAGACTCTGGACCCAAATCAATATTACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTGTGGGTGCTGAGGAGGAGACTCTGGACCCAAATCAATATTACA  334

seq1  GGATCCAAAGTCCAGCAGCTGAAGTTCAGTACAGAGGACTCATACCCACC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCAAAGTCCAGCAGCTGAAGTTCAGTACAGAGGACTCATACCCACC  384

seq1  CAAGTACCATGTGGACATCTCATTCACTCGGTTCATTCAAGAATACAGTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACCATGTGGACATCTCATTCACTCGGTTCATTCAAGAATACAGTC  434

seq1  ACCTGCAGCCTGGGGATCACCTGACTAACAACATAAGTGGCAGGTCACAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAGCCTGGGGATCACCTGACTAACAACATAAGTGGCAGGTCACAT  484

seq1  CCAAGAGAGTGTCTGGGGAAAATTCATCTTCTATGACCTTTGAGGAGAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGAGTGTCTGGGGAAAATTCATCTTCTATGACCTTTGAGGAGAGG  534

seq1  AGGTCAAGTTACAAGTCATGGCCAACTCCAGGAATTATAAATCAGAGGAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAGTTACAAGTCATGGCCAACTCCAGGAATTATAAATCAGAGGAA  584

seq1  GAATGTGTGCATCTCAATAAAAACTGCATCAGGGAGATATAATTAGAGTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGTGCATCTCAATAAAAACTGCATCAGGGAGATATAATTAGAGTT  634

seq1  GAGGGTAATCCAGGGAAAACCAAGAAGGACAAGCTGAGCACCATCCCCCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTAATCCAGGGAAAACCAAGAAGGACAAGCTGAGCACCATCCCCCA  684

seq1  GGAGATCACACTTCTGTCCCTCTGCTTGCACATGTGCCTCAGCTTCATTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCACACTTCTGTCCCTCTGCTTGCACATGTGCCTCAGCTTCATTT  734

seq1  TGGCCTTCAAAGACAAGGAAATAAGGTCTCTTCAGAGATATTTGGGCTTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTCAAAGACAAGGAAATAAGGTCTCTTCAGAGATATTTGGGCTTG  784

seq1  ATACTGAAGGAGTTTGTGAGATAGAAATTTGTCATCTTCTCTAAAGATAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAAGGAGTTTGTGAGATAGAAATTTGTCATCTTCTCTAAAGATAA  834

seq1  TCACAGATATAAGAAGTTTCTTAGATGAGCTGGGATCCCTGGACTTTGGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGATATAAGAAGTTTCTTAGATGAGCTGGGATCCCTGGACTTTGGA  884

seq1  ACTCCCATGATGAGCATCATCCCTGGGGGAGCTTCAGCCAAGCCTTTCAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCATGATGAGCATCATCCCTGGGGGAGCTTCAGCCAAGCCTTTCAT  934

seq1  CACCTATCACAATGAGCAGGAAAATGAACTTATGTATGAGAATTGCTCCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATCACAATGAGCAGGAAAATGAACTTATGTATGAGAATTGCTCCA  984

seq1  GAACCCTACCATAAGATGCTGGCTGTTGGTGCCATTGACAGGGTTTATGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTACCATAAGATGCTGGCTGTTGGTGCCATTGACAGGGTTTATGA  1034

seq1  AATTGGGCACCAGTTCTGGAGTGAAGGGATTGATTTGACTCACATTCTGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGCACCAGTTCTGGAGTGAAGGGATTGATTTGACTCACATTCTGA  1084

seq1  ATTC  1100
      ||||
seq2  ATTC  1088