BAC Information

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BAC

Clone NameB6Ng01-066J22
ChromosomeX (Build37)
Map Location 101,654,894 - 101,656,050
singlet/doubletsinglet
Overlap genenone
Upstream geneTsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2, EG621381, EG668426, LOC668430, Rnf12, C77370, Vcp-ps, EG621542
Downstream geneUprt, Zdhhc15, Magee2, LOC622098, LOC676331, 5530601H04Rik, 2610029G23Rik, Magee1, LOC622159, LOC668454, E530001F21Rik, LOC622202, LOC100043213
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066J22.bB6Ng01-066J22.g
ACCDH885749DH885750
length1,0881,236
definitionDH885749|Mus musculus domesticus DNA, BAC clone: B6Ng01-066J22, 5' end.DH885750|Mus musculus domesticus DNA, BAC clone: B6Ng01-066J22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaattagctggtattttacaaatttgcaaggctttaacttcctgt
gcaacaatttccaaaattttttttatcgtgaactcctgtattcataataa
aattcttttatgctgatccatacattagccagcatgaactctttctcctc
tcattacccacaggtacaaaaatgtccctaaaatactccactcatttctg
aattagatctttttacatcatgcttatcatcagctaattttaaaacaaac
aaacaaaaatgtggtttttataggagagaatttcttaatgtaggcagagt
attatcaggtggatgctcaaactgaatatactcaaagtatattcaaagtg
tacatccacagaaatctcctactaaaattatgaatgtcatccttttcaat
gcagttttctttagaatatatatacgtgcaatgcaaagtatgccattcca
tgtagttatcactcactctccatggcatgttggtcttgctgccactagca
acaaaaccctcaagatgacttcagagaattattcagctattttttttttt
ttactaatcacgcatactcctcattcaagagtagaaatacatatggctca
gactactcagaatttctatttcagtgatcatgtgtggagcagagaacctg
aaataaggtgctgggaattgctggccttacatttcccatctcagaggcat
ttcttaccaccagtaagtaacccatcacataatcttcactgggggaagtc
accagaacattgcaaagaaaactaagatcaaggtatggtaggacacgtct
ttaattccagcactcagtaggcagaggcagtcagatctctgtgagtttga
gcccagtctatgctacatagtgagttccaggacaaccagggctacataga
aagaccctgtcttaaataaaatgaaaggaaagaacgcagcagcagcagca
gcagaaggagggatgagaagatgagagagagaggagagagagaggagaga
gaagagatgcactaggagctctggtagctgacttctcatgaggccacaca
cagagttatgcaactcaatgatcattattgtttttttt
gaattcaatacaggagtgaaattgtgtcatatttttctgggtctgttttg
attttacataatatcctccagattaagtactttgttgcaactggccaatt
ttccaatttgtttaacgctaaataatctccattacatgcatgcacaactg
tgcacacatatacacataccaatttctgtttccgtgtattcatctactaa
tacttcatatattcagtactgtaagcaatgcttcaatgaatatgggagtg
ccagcatctctatgacataccaaagtcatatccttatggtatataaccat
aaacaagattgctggatcatgacagtttcaattttgatgaaatcaaaaac
cctacacataacagctatgacaatttatgatcctatatacaatatacaat
ggttctctgttctctataacctcattcatttattatctgttattttcttg
aaaaaaagtctttttttcttttttcttttctttctttctgcttttgtttt
tttccagacagggtttctctgtacacagccctggctgtcctggagctcac
tctgtagaccaggctggccttgaactcagaaatcctcctgcatctgcctc
ccaagtgctgggattaaaggcatgtgccaccattaataagtatgatttca
gtgttgcttttatttgaacttccctggtgattagtgattttgagcacttt
ttcatataactgttggccattacattatttttttaaaacaatgtctattt
agatcctatgctcatttttaagtttaaaagttttgctactatattgtaag
agaactccttacagatttatactatttactatttattagatatataattt
gtaaataatttctctcaattcatagattcctttatcagatttttggttgt
tttactgcatacgtgcttttggtctatatcttttggtaatggtctattta
attttggttgtctaagcttgtgatgttacatgcaaaagtcgttgctgaag
ctaagtcaacgatattttcctcttgctttcctttaagagttagtagcttc
cctcctggaacttacaggccactctgacatagaaacgtagctaagtccaa
atcttactttgcttcaatcttcaatcagtccagtttagccagctcttagc
aaacggtcgcgctcattcatcaggtccgattcctagggtctccactttgt
cttacacacgccctctagtgttaggagactcctcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_101654894_101656050
seq2: B6Ng01-066J22.b_49_1136 (reverse)

seq1  AAAAAAAACCAAAATAATGAATACAATTTGAGTTTTGCATATACTCTTGT  50
      |||||||||   ||||||||  |    |||||  ||||||| ||||   |
seq2  AAAAAAAAC---AATAATGATCA----TTGAG--TTGCATA-ACTC---T  37

seq1  GTGTGTGGCCCTCCACTGGAGTATAGGTCAGCCTACCA-AGAGCCTACCT  99
      |||||||| ||||      |  | | ||||| |||||| ||  ||||   
seq2  GTGTGTGG-CCTC------ATGAGAAGTCAG-CTACCAGAGCTCCTA---  76

seq1  TATGTTTTGTCTATTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT  149
              ||  ||  ||||                      ||  ||||
seq2  --------GTGCATCTCTTC----------------------TCTCTCCT  96

seq1  TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTCCTTCCTTCCCTCCTTC  199
        ||  ||  | ||  ||  || |  |||||       | ||||||||| 
seq2  --CTCTCTCTCCTCTCTCTCTCAT--CTTCT-------CATCCCTCCTT-  134

seq1  CTGCTTGCCTGCCTGCCTGCCTGCCTTCTTTCCTTTCATTTTATTTAAGA  249
      |||||   ||| ||| ||| |||| |||||||||||||||||||||||||
seq2  CTGCT--GCTG-CTG-CTG-CTGCGTTCTTTCCTTTCATTTTATTTAAGA  179

seq1  CAGGGTCTTTCTATGTAGCCCTGGTTGTCCTGGAACTCACTATGTAGCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTTTCTATGTAGCCCTGGTTGTCCTGGAACTCACTATGTAGCAT  229

seq1  AGACTGGGCTCAAACTCACAGAGATCTGACTGCCTCTGCCTACTGAGTGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGGCTCAAACTCACAGAGATCTGACTGCCTCTGCCTACTGAGTGC  279

seq1  TGGAATTAAAGACGTGTCCTACCATACCTTGATCTTAGTTTTCTTTGCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTAAAGACGTGTCCTACCATACCTTGATCTTAGTTTTCTTTGCAA  329

seq1  TGTTCTGGTGACTT-CCCCAGTGAAGATTATGTGATGGGTTACTTACTGG  448
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTTCTGGTGACTTCCCCCAGTGAAGATTATGTGATGGGTTACTTACTGG  379

seq1  TGGTAAGAAATGCCTCTGAGATGGGAAATGTAAGGCCAGCAATTCCCAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGAAATGCCTCTGAGATGGGAAATGTAAGGCCAGCAATTCCCAGC  429

seq1  ACCTTATTTCAGGTTCTCTGCTCCACACATGATCACTGAAATAGAAATTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATTTCAGGTTCTCTGCTCCACACATGATCACTGAAATAGAAATTC  479

seq1  TGAGTAGTCTGAGCCATATGTATTTCTACTCTTGAATGAGGAGTATGCGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGTCTGAGCCATATGTATTTCTACTCTTGAATGAGGAGTATGCGT  529

seq1  GATTAGTAAAAAAAAAAAAATAGCTGAATAATTCTCTGAAGTCATCTTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGTAAAAAAAAAAAAATAGCTGAATAATTCTCTGAAGTCATCTTGA  579

seq1  GGGTTTTGTTGCTAGTGGCAGCAAGACCAACATGCCATGGAGAGTGAGTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTGTTGCTAGTGGCAGCAAGACCAACATGCCATGGAGAGTGAGTG  629

seq1  ATAACTACATGGAATGGCATACTTTGCATTGCACGTATATATATTCTAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTACATGGAATGGCATACTTTGCATTGCACGTATATATATTCTAAA  679

seq1  GAAAACTGCATTGAAAAGGATGACATTCATAATTTTAGTAGGAGATTTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTGCATTGAAAAGGATGACATTCATAATTTTAGTAGGAGATTTCT  729

seq1  GTGGATGTACACTTTGAATATACTTTGAGTATATTCAGTTTGAGCATCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGTACACTTTGAATATACTTTGAGTATATTCAGTTTGAGCATCCA  779

seq1  CCTGATAATACTCTGCCTACATTAAGAAATTCTCTCCTATAAAAACCACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATAATACTCTGCCTACATTAAGAAATTCTCTCCTATAAAAACCACA  829

seq1  TTTTTGTTTGTTTGTTTTAAAATTAGCTGATGATAAGCATGATGTAAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTGTTTGTTTTAAAATTAGCTGATGATAAGCATGATGTAAAAA  879

seq1  GATCTAATTCAGAAATGAGTGGAGTATTTTAGGGACATTTTTGTACCTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAATTCAGAAATGAGTGGAGTATTTTAGGGACATTTTTGTACCTGT  929

seq1  GGGTAATGAGAGGAGAAAGAGTTCATGCTGGCTAATGTATGGATCAGCAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATGAGAGGAGAAAGAGTTCATGCTGGCTAATGTATGGATCAGCAT  979

seq1  AAAAGAATTTTATTATGAATACAGGAGTTCACGATAAAAAAAATTTTGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATTTTATTATGAATACAGGAGTTCACGATAAAAAAAATTTTGGA  1029

seq1  AATTGTTGCACAGGAAGTTAAAGCCTTGCAAATTTGTAAAATACCAGCTA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTGCACAGGAAGTTAAAGCCTTGCAAATTTGTAAAATACCAGCTA  1079

seq1  ATTGAATTC  1157
      |||||||||
seq2  ATTGAATTC  1088