BAC Information

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BAC

Clone NameB6Ng01-068D04
ChromosomeX (Build37)
Map Location 130,470,351 - 130,589,326
singlet/doubletdoublet
Overlap geneSytl4, LOC665889
Upstream geneLOC665850, LOC665854, LOC100040794, Pcdh19, LOC100040831, Tnmd, Tspan6, Srpx2
Downstream geneCstf2, Nox1, Xkrx, Arl13a, 4732479N06Rik, LOC100040849, Tmem35, Cenpi, Drp2, Taf7l, LOC669370, LOC674122, Timm8a1, Btk, Rpl36a, Gla, Hnrph2, LOC665936, LOC665941, Armcx1, LOC100040933, LOC100040520, Armcx6, Armcx3, Armcx2, LOC637800, LOC100040987, Nxf2, B930008K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068D04.bB6Ng01-068D04.g
ACCDH886858DH886859
length1,1411,199
definitionDH886858|Mus musculus domesticus DNA, BAC clone: B6Ng01-068D04, 5' end.DH886859|Mus musculus domesticus DNA, BAC clone: B6Ng01-068D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,470,351 - 130,471,517)(130,588,115 - 130,589,326)
sequence
gaattcaaaatccaatactgtcacatgacaaggagctcatgtctcttcag
ctgcaagaagagaaggtttcctacttcataaggtgttggaaagagtcagg
caatattatagcaatccttgtgtacaagacacattttgtgtttgcagata
tgcttttgcacagagaccaagcatcacttgagctagaaactggagacctt
atctcaaatacgagttgtctaggaaaaaaatctcaacctcccagagaaac
tgaataacctagaaagaagtgctggtgacatgaagcgtatccatccacac
ctgtatctctgtcttctccctccagcaaagaacagtctacaaagccaaag
gccagcttcttctattggtacccaagggggaaaagagcagcgctactttg
agattccaacactataagacaaggaatctgggctcaggcagcagtgtggg
aaaagacagattttcttcctgtatagtgaggtccattcgtttctctactt
ctgatcttcaagttgtgagtgacagtgacgacaccaagtcaggacatcag
agaaaaaagcatctgcagaactctcaaatgtaaacactcgggtgagaaag
ctttattgaaacacacatgcatattaaagtagaatatcaaagaacaagtc
tgagcctgggctctcaggtatgtttccattacaggatcaatccatattga
agggaatctttgaaaaacattctatgcagtttacacccataatcttaatc
actttagctgcctgcaatccagtgaccttacaggaatgtcaacttgcagc
tggatgtcactgacaggcatttcttctctgctccagacaccttccacata
cacctttctatagacagactgcttatgaatgaaaagttcagttcggaaga
atgagtagcaggaaatgaaagcccactagaacctcttttaagtctcacac
acactactcccatgttacacccaggtcagtttaggaacaaccaagacagg
actgaaagtatatgggtgaaagtagatgctggggaattcatccacatttc
atgcatggtactagtacccaactgggggagcacggtgtcattagacggtc
ttgctgcgatgaaacgaggtatacgactagttcatgtagca
gaattcttgctccttagttgttgaaactgtttggataggtttaggaggta
tggacttacaggaggaaatatgccactggggataagctttgaggtttcaa
aattctcatgcttcctgcttgttgcctgctgtctctacaccaccatcatg
gcttctaaacctttggaactgttagcccgcataaactctcccttctataa
cttgccttggtcatgatgttgccttggtcatgatgttttagcacagcaat
acaaaagtaactaatataggtacttgtaagtaaggtttttggaattaaaa
tgttgtaagaagggggaattcatgtggaggtcagagagagagcaggtgtg
agtggaagcaacagaaggagtcatggctgccaaagtgtttgagtccattg
gaaagttcggcctggggttagcagttgcaggaggcatggtgaactctgct
ttgtataatgtggatgctgggcacagagctgtcatctttgaccaattcca
tggcatacaggtcactgtgataggggaagtgactcacttcttcatccctt
gggtaccaaagccaattatctttgactgtcactctcgaccacagaaggta
cctgttgtcgttgggagcagacttgcagatcgtcaacatcacactgcgca
tcctcttctggctggtggccaggcaccttcctcatatctacaccaacatt
ggcgaggactatgatgagcaggtgctgccgtctatcaccacagagatcct
caagtcggtggtgggtcgattcgatgctggagagttggtgacctagagag
ctggtctccagacaggtgagcgatggcctcacagagcgagcagcaacatc
ctgggtgatgtgtcccctctgacacatctgaccttcaggaaagagttcac
aggagaaagtagaagccaaacaagtggctcagcagaaagcagagagagcc
agatttgtggttgaaaagctgagcgcccagaaggcagccatcatctctgc
tggagggtgactccaggcagctgagttgatcactaacttgcttgtcacag
caggtgctggctgattgggctgtgaagttgggagctgctgaggacttgca
tcagccttccctcctcctatcctctactgccaggggactcgtgctccttc
cagcttcccagttgagcacttgggccacggctccattatctaattcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_130470351_130471517
seq2: B6Ng01-068D04.b_45_1185

seq1  GAATTCAAAATCCAATACTGTCACATGACAAGGAGCTCATGTCTCTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATCCAATACTGTCACATGACAAGGAGCTCATGTCTCTTCAG  50

seq1  CTGCAAGAAGAGAAGGTTTCCTACTTCATAAGGTGTTGGAAAGAGTCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGAAGAGAAGGTTTCCTACTTCATAAGGTGTTGGAAAGAGTCAGG  100

seq1  CAATATTATAGCAATCCTTGTGTACAAGACACATTTTGTGTTTGCAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTATAGCAATCCTTGTGTACAAGACACATTTTGTGTTTGCAGATA  150

seq1  TGCTTTTGCACAGAGACCAAGCATCACTTGAGCTAGAAACTGGAGACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTGCACAGAGACCAAGCATCACTTGAGCTAGAAACTGGAGACCTT  200

seq1  ATCTCAAATACGAGTTGTCTAGGAAAAAAATCTCAACCTCCCAGAGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAATACGAGTTGTCTAGGAAAAAAATCTCAACCTCCCAGAGAAAC  250

seq1  TGAATAACCTAGAAAGAAGTGCTGGTGACATGAAGCGTATCCATCCACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAACCTAGAAAGAAGTGCTGGTGACATGAAGCGTATCCATCCACAC  300

seq1  CTGTATCTCTGTCTTCTCCCTCCAGCAAAGAACAGTCTACAAAGCCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCTCTGTCTTCTCCCTCCAGCAAAGAACAGTCTACAAAGCCAAAG  350

seq1  GCCAGCTTCTTCTATTGGTACCCAAGGGGGAAAAGAGCAGCGCTACTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTTCTTCTATTGGTACCCAAGGGGGAAAAGAGCAGCGCTACTTTG  400

seq1  AGATTCCAACACTATAAGACAAGGAATCTGGGCTCAGGCAGCAGTGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCAACACTATAAGACAAGGAATCTGGGCTCAGGCAGCAGTGTGGG  450

seq1  AAAAGACAGATTTTCTTCCTGTATAGTGAGGTCCATTCGTTTCTCTACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAGATTTTCTTCCTGTATAGTGAGGTCCATTCGTTTCTCTACTT  500

seq1  CTGATCTTCAAGTTGTGAGTGACAGTGACGACACCAAGTCAGGACATCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTTCAAGTTGTGAGTGACAGTGACGACACCAAGTCAGGACATCAG  550

seq1  AGAAAAAAGCATCTGCAGAACTCTCAAATGTAAACACTCGGGTGAGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAGCATCTGCAGAACTCTCAAATGTAAACACTCGGGTGAGAAAG  600

seq1  CTTTATTGAAACACACATGCATATTAAAGTAGAATATCAAAGAACAAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTGAAACACACATGCATATTAAAGTAGAATATCAAAGAACAAGTC  650

seq1  TGAGCCTGGGCTCTCAGGTATGTTTCCATTACAGGATCAATCCATATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTGGGCTCTCAGGTATGTTTCCATTACAGGATCAATCCATATTGA  700

seq1  AGGGAATCTTTGAAAAACATTCTATGCAGTTTACACCCATAATCTTAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATCTTTGAAAAACATTCTATGCAGTTTACACCCATAATCTTAATC  750

seq1  ACTTTAGCTGCCTGCAATCCAGTGACCTTACAGGAATGTCAACTTGCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGCTGCCTGCAATCCAGTGACCTTACAGGAATGTCAACTTGCAGC  800

seq1  TGGATGTCACTGACAGGCATTTCTTCTCTGCTCCAGACACCTTCCACATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTCACTGACAGGCATTTCTTCTCTGCTCCAGACACCTTCCACATA  850

seq1  CACCTTTCTATAGACAGACTGCTTATGAATGAAAAGTTCAGTTCGGAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTCTATAGACAGACTGCTTATGAATGAAAAGTTCAGTTCGGAAGA  900

seq1  ATGAGTAGCAGGAAATGAAAGCCCACTAGAACCTCTTTTAAGTCTCAACA  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATGAGTAGCAGGAAATGAAAGCCCACTAGAACCTCTTTTAAGTCTC-ACA  949

seq1  CACACTACTCCCATGTTACACCCAGGTCAAGTTTAGGAAACAACCAAAGA  1000
      |||||||||||||||||||||||||||| |||||||| ||||||| ||||
seq2  CACACTACTCCCATGTTACACCCAGGTC-AGTTTAGG-AACAACC-AAGA  996

seq1  CAGGAACTGAAAGTATATTGGGTGAAAAGTTAGAATGGCTGGGGAATTCC  1050
      |||| |||||||||||| |||||||||   ||||   ||||||||||| |
seq2  CAGG-ACTGAAAGTATA-TGGGTGAAA--GTAGA--TGCTGGGGAATT-C  1039

seq1  ATCCACATTTTCATGGCATGGTACTAGTACCCAACCTGGGGGAGCACGGT  1100
      ||||||| |||||| ||||||||||||||||||| |||||||||||||||
seq2  ATCCACA-TTTCAT-GCATGGTACTAGTACCCAA-CTGGGGGAGCACGGT  1086

seq1  GTCATTTTAGACGGTCTTTGGCCCTTGCAGATGAAACAGAGGTATACAGA  1150
      ||||  ||||||||||||  ||   ||| |||||||| ||||||||| ||
seq2  GTCA--TTAGACGGTCTT--GC---TGC-GATGAAAC-GAGGTATAC-GA  1126

seq1  CTATGTTCTATGTAGCA  1167
      ||| |||| ||||||||
seq2  CTA-GTTC-ATGTAGCA  1141

seq1: chrX_130588115_130589326
seq2: B6Ng01-068D04.g_68_1266 (reverse)

seq1  AAGGAATTTAGAATGATGGAGGCCGTGGCCCAGCTGGCTTCACTGGGGAA  50
      |||||| |||| || ||||| |||||||||||  | |||  ||| |||||
seq2  AAGGAA-TTAG-ATAATGGA-GCCGTGGCCCAAGT-GCTCAACT-GGGAA  45

seq1  GCTGG-AGGAGCACAGAGTGCCCCGCTGGCAGGTAGGAGATGAGA-GAGG  98
      ||||| |||||||| ||||   || |||||| ||||  |||  || ||||
seq2  GCTGGAAGGAGCAC-GAGT---CCCCTGGCA-GTAGAGGATAGGAGGAGG  90

seq1  GAGAGCTGGTATGCAATGTCCTCAGCAGCTTCCAGCTTTCACAGCCCAAT  148
      ||  ||||  |||||| ||||||||||||| ||| | |||||||||||||
seq2  GAAGGCTG--ATGCAA-GTCCTCAGCAGCTCCCAAC-TTCACAGCCCAAT  136

seq1  CAGGCCAGCACCTGCTGTGACCAGCAAGTTAGTGATCAACTCAGCTGCCT  198
      || |||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  CA-GCCAGCACCTGCTGTGACAAGCAAGTTAGTGATCAACTCAGCTGCC-  184

seq1  TGGAGTCACCCT-CAGCAGAGATGATGGCTGCCTTCTGGTGCGCTCAGCC  247
      |||||||||||| |||||||||||||||||||||||||| |||||||| |
seq2  TGGAGTCACCCTCCAGCAGAGATGATGGCTGCCTTCTGG-GCGCTCAG-C  232

seq1  TTTTCCACCACAAATCTGGCTCTCTCTGCTTTCTGCTGAGCCACTTGTTT  297
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACCACAAATCTGGCTCTCTCTGCTTTCTGCTGAGCCACTTGTTT  282

seq1  GGCTTCTACTTTCT-CTGTGAACTCTTTCCTGAAGGTCAGATGTGTCAG-  345
      |||||||||||||| |||||||||||||||||||||||||||||||||| 
seq2  GGCTTCTACTTTCTCCTGTGAACTCTTTCCTGAAGGTCAGATGTGTCAGA  332

seq1  GGGGACACATCACCCAGGATGTTGCTGCTCGCTCTGTGAGGCCATCGCTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACACATCACCCAGGATGTTGCTGCTCGCTCTGTGAGGCCATCGCTC  382

seq1  ACCTGTCTGGAGACCAGCTCTCTAGGTCACCAACTCTCCAGCATCGAATC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCTGGAGACCAGCTCTCTAGGTCACCAACTCTCCAGCATCGAATC  432

seq1  GACCCACCACCGACTTGAGGATCTCTGTGGTGATAGACGGCAGCACCTGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACCACCGACTTGAGGATCTCTGTGGTGATAGACGGCAGCACCTGC  482

seq1  TCATCATAGTCCTCGCCAATGTTGGTGTAGATATGAGGAAGGTGCCTGGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATAGTCCTCGCCAATGTTGGTGTAGATATGAGGAAGGTGCCTGGC  532

seq1  CACCAGCCAGAAGAGGATGCGCAGTGTGATGTTGACGATCTGCAAGTCTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCCAGAAGAGGATGCGCAGTGTGATGTTGACGATCTGCAAGTCTG  582

seq1  CTCCCAACGACAACAGGTACCTTCTGTGGTCGAGAGTGACAGTCAAAGAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAACGACAACAGGTACCTTCTGTGGTCGAGAGTGACAGTCAAAGAT  632

seq1  AATTGGCTTTGGTACCCAAGGGATGAAGAAGTGAGTCACTTCCCCTATCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCTTTGGTACCCAAGGGATGAAGAAGTGAGTCACTTCCCCTATCA  682

seq1  CAGTGACCTGTATGCCATGGAATTGGTCAAAGATGACAGCTCTGTGCCCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACCTGTATGCCATGGAATTGGTCAAAGATGACAGCTCTGTGCCCA  732

seq1  GCATCCACATTATACAAAGCAGAGTTCACCATGCCTCCTGCAACTGCTAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCACATTATACAAAGCAGAGTTCACCATGCCTCCTGCAACTGCTAA  782

seq1  CCCCAGGCCGAACTTTCCAATGGACTCAAACACTTTGGCAGCCATGACTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGCCGAACTTTCCAATGGACTCAAACACTTTGGCAGCCATGACTC  832

seq1  CTTCTGTTGCTTCCACTCACACCTGCTCTCTCTCTGACCTCCACATGAAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTGCTTCCACTCACACCTGCTCTCTCTCTGACCTCCACATGAAT  882

seq1  TCCCCCTTCTTACAACATTTTAATTCCAAAAACCTTACTTACAAGTACCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTTCTTACAACATTTTAATTCCAAAAACCTTACTTACAAGTACCT  932

seq1  ATATTAGTTACTTTTGTATTGCTGTGCTAAAACATCATGACCAAGGCAAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGTTACTTTTGTATTGCTGTGCTAAAACATCATGACCAAGGCAAC  982

seq1  ATCATGACCAAGGCAAGTTATAGAAGGGAGAGTTTATGCGGGCTAACAGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGACCAAGGCAAGTTATAGAAGGGAGAGTTTATGCGGGCTAACAGT  1032

seq1  TCCAAAGGTTTAGAAGCCATGATGGTGGTGTAGAGACAGCAGGCAACAAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGGTTTAGAAGCCATGATGGTGGTGTAGAGACAGCAGGCAACAAG  1082

seq1  CAGGAAGCATGAGAATTTTGAAACCTCAAAGCTTATCCCCAGTGGCATAT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGCATGAGAATTTTGAAACCTCAAAGCTTATCCCCAGTGGCATAT  1132

seq1  TTCCTCCTGTAAGTCCATACCTCCTAAACCTATCCAAACAGTTTCAACAA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTGTAAGTCCATACCTCCTAAACCTATCCAAACAGTTTCAACAA  1182

seq1  CTAAGGAGCAAGAATTC  1212
      |||||||||||||||||
seq2  CTAAGGAGCAAGAATTC  1199