BAC Information

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BAC

Clone NameB6Ng01-068I02
ChromosomeX (Build37)
Map Location 20,029,358 - 20,211,517
singlet/doubletdoublet
Overlap genePhf16, Rgn, Ndufb11, Rbm10
Upstream geneBC049702, LOC675558, LOC668995, LOC385336, Chst7, Slc9a7, LOC668277, LOC100043954, EG668996, Rp2h, LOC668283
Downstream geneUbe1x, Pctk1, Usp11, LOC100043955, Araf, Syn1, Timp1, Cfp, Elk1, Uxt, A230072C01Rik, Zfp182, Spaca5, D930016N04Rik, Ssxa1, Gm1848, EG546268, EG629024, EG331392, Agtr2, EG668997
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068I02.bB6Ng01-068I02.g
ACCDH887075DH887076
length1,173929
definitionDH887075|Mus musculus domesticus DNA, BAC clone: B6Ng01-068I02, 5' end.DH887076|Mus musculus domesticus DNA, BAC clone: B6Ng01-068I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,210,331 - 20,211,517)(20,029,358 - 20,030,285)
sequence
gaattcaaggtcagccaaagtacaaaatcgagtttaaggttatatgagac
cctggtttttttttttttttgtttttttaaacaatacgtgtttatttaaa
aaggaaatatgctgctatggctatttaactcagtggcagaccacctatga
gaccctgggtttaatatctagtattggagaaaaaaaaataaagatgtaaa
aaagaacatggtcaagcaagaagaatcaggcccattagaagaatgcggta
agagtccactcatgaaaagtaatacattagagtctgttattgacaccact
cttagactatattattctgacactaactaaaacaattaagtaagtggaag
aaagaaaaaaaaaagcattaagaaccataaaggtgagtcccaggatgtcc
agggtaatacagagaagctatcttgaaaagctaaaaaacaaaatccaaac
aagcaaaacaaaaaaacctgtaaaggtaaaatcaccattatttgtggcca
atgagaataaccctgcaaagcctaaatgaatcatgttttttaaaaaaaag
ggaagaaagaatacaagtaataaattaggagctgtgggtatatagttcaa
tgacaacacattcaaggcctgcgctaacttcagtactcccaaaatactaa
cagcaatgctgatgattaaaaacaaaaaaacaaaacatcaggggctagag
agatgcctcagaggttaagagtactttttgctcttctagaggactcaagt
tcaattccctgtatccatgtcagtcagctcactcacaagtaactctagct
ccagcaggtgtgatgcacacttctggcttccagatgcacacatgtaagca
tacactcgtaaagacacacacaaataaatttaataaagattctgggctta
taaaattaatatacaaaatatatattttgcttacattcaatagccattgt
ttggaaaacaggaaggacactacttatgattacatctaaaaggtttaaat
atgggctaaagaggatgggtcagcagttaagaagcactgactattcttcc
caggaccctggtttgattcctattacccacaaaggtggtcacggacggcc
tgtacttcagcctcttgggaatcagtgtggcaccatgcaacatatcacaa
aaatggaaaggatgtaatatcta
gaattccaggccagcctggtctacaaagttggttccatgacagctagagc
tgttacacagagaaaccctgtctcaaacaacaacaacaacaacaacaaca
acccccctccaaataaaaacaaaaaggaaggaaagagatagagaatcaaa
ttatcaataaatgtcgatagagagaggtggcttagcagttttggaactac
tctactcccaacaaccatttggcttaaaactgtctgtaattccaactcca
gaggatccaacacctttcctagccttgggcctgcacatgcgcacgttcgc
atacacacacatacacacatgtatgcatgcttattttctctgtcaccaca
cacacacaagatatttttaaaaaatgaccaagtttggaaaataggcatga
ttctccttgtctgatgtatcagtcacctaatattccattcttcatgtaaa
aattaagcatgtcagttgtatagtattagtatgtaattgtctgtattagt
atgcagatttaaagatttcatgtattttatctttagtatatgatccacct
ttataatattttaaattaatgaattaatatttattaatgaattaatattt
tatatcaagttagactttggctgaggttctcactctagtactattccaac
actatatatatacttttgtcaaaataggttgggcatatttttatggaagt
gttttaaaaataaagtaagagaatcagtctaagaatatggatatgtttgg
gttacatagcaaaggaaaaataaggttgcttaagcaatctttttaaagta
aggacaataacttggatatttggtttgggctgaatgtaattacaggggtc
tttgcaaacggaaaaaatggaataaagatctagatctgattatagaaggt
tatttcgagaaatgtaacattgtttactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_20210331_20211517
seq2: B6Ng01-068I02.b_45_1217 (reverse)

seq1  TAGATATTAATAATTTATTTAAAGATTTCTTTTCATTTTTGTGTATATGT  50
      |||||||||                 | |||| |||||||||| ||||| 
seq2  TAGATATTA---------------CATCCTTTCCATTTTTGTG-ATATG-  33

seq1  TTGCATGTGTG-CACACTGATCCCAAAGGAGCTGAAGTTACAGGCTGT-C  98
      ||||||| ||| ||||||||| || |||  ||||||| ||||||| || |
seq2  TTGCATG-GTGCCACACTGATTCCCAAGAGGCTGAAG-TACAGGCCGTCC  81

seq1  GTGAACCACTTTGTGGGTAATAGGAATCAAACCAGGGTCCTGTGGAAGAA  148
      |||| |  |||||||||||||||||||||||||||||||||| |||||||
seq2  GTGACCACCTTTGTGGGTAATAGGAATCAAACCAGGGTCCTG-GGAAGAA  130

seq1  TAGTCAGTGC-TCTTAACTGCTGAACCAT-CTCTTTAGCCCAATATTT-A  195
      |||||||||| ||||||||||||| |||| ||||||||||| |||||| |
seq2  TAGTCAGTGCTTCTTAACTGCTGACCCATCCTCTTTAGCCC-ATATTTAA  179

seq1  ACCTTTTAGATGTAATCATAGGTAGTTGTCTTCCTGTTTTCCAAACAATG  245
      |||||||||||||||||||| |||||   |||||||||||||||||||||
seq2  ACCTTTTAGATGTAATCATAAGTAGTGTCCTTCCTGTTTTCCAAACAATG  229

seq1  GCTATTTGAATGTAAGCAAAATATATATTTTGTATATTAATTTTATA--G  293
      |||| ||||||||||||||||||||||||||||||||||||||||||   
seq2  GCTA-TTGAATGTAAGCAAAATATATATTTTGTATATTAATTTTATAAGC  278

seq1  CCAGAATCTTTATTAAATTTATTTGTGTGTGTCTTTACGAGTGTATGCTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATCTTTATTAAATTTATTTGTGTGTGTCTTTACGAGTGTATGCTT  328

seq1  ACATGTGTGCATCTGGAAGCCAGAAGTGTGCATCACACCTGCTGGAGCTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTGCATCTGGAAGCCAGAAGTGTGCATCACACCTGCTGGAGCTA  378

seq1  GAGTTACTTGTGAGTGAGCTGACTGACATGGATACAGGGAATTGAACTTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACTTGTGAGTGAGCTGACTGACATGGATACAGGGAATTGAACTTG  428

seq1  AGTCCTCTAGAAGAGCAAAAAGTACTCTTAACCTCTGAGGCATCTCTCTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCTAGAAGAGCAAAAAGTACTCTTAACCTCTGAGGCATCTCTCTA  478

seq1  GCCCCTGATGTTTTGTTTTTTTGTTTTTAATCATCAGCATTGCTGTTAGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGATGTTTTGTTTTTTTGTTTTTAATCATCAGCATTGCTGTTAGT  528

seq1  ATTTTGGGAGTACTGAAGTTAGCGCAGGCCTTGAATGTGTTGTCATTGAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGGAGTACTGAAGTTAGCGCAGGCCTTGAATGTGTTGTCATTGAA  578

seq1  CTATATACCCACAGCTCCTAATTTATTACTTGTATTCTTTCTTCCCTTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATACCCACAGCTCCTAATTTATTACTTGTATTCTTTCTTCCCTTTT  628

seq1  TTTTAAAAAACATGATTCATTTAGGCTTTGCAGGGTTATTCTCATTGGCC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAACATGATTCATTTAGGCTTTGCAGGGTTATTCTCATTGGCC  678

seq1  ACAAATAATGGTGATTTTACCTTTACAGGTTTTTTTGTTTTGCTTGTTTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAATGGTGATTTTACCTTTACAGGTTTTTTTGTTTTGCTTGTTTG  728

seq1  GATTTTGTTTTTTAGCTTTTCAAGATAGCTTCTCTGTATTACCCTGGACA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTTTTTTAGCTTTTCAAGATAGCTTCTCTGTATTACCCTGGACA  778

seq1  TCCTGGGACTCACCTTTATGGTTCTTAATGCTTTTTTTTTTCTTTCTTCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGACTCACCTTTATGGTTCTTAATGCTTTTTTTTTTCTTTCTTCC  828

seq1  ACTTACTTAATTGTTTTAGTTAGTGTCAGAATAATATAGTCTAAGAGTGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTTAATTGTTTTAGTTAGTGTCAGAATAATATAGTCTAAGAGTGG  878

seq1  TGTCAATAACAGACTCTAATGTATTACTTTTCATGAGTGGACTCTTACCG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATAACAGACTCTAATGTATTACTTTTCATGAGTGGACTCTTACCG  928

seq1  CATTCTTCTAATGGGCCTGATTCTTCTTGCTTGACCATGTTCTTTTTTAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCTAATGGGCCTGATTCTTCTTGCTTGACCATGTTCTTTTTTAC  978

seq1  ATCTTTATTTTTTTTTCTCCAATACTAGATATTAAACCCAGGGTCTCATA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATTTTTTTTTCTCCAATACTAGATATTAAACCCAGGGTCTCATA  1028

seq1  GGTGGTCTGCCACTGAGTTAAATAGCCATAGCAGCATATTTCCTTTTTAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCTGCCACTGAGTTAAATAGCCATAGCAGCATATTTCCTTTTTAA  1078

seq1  ATAAACACGTATTGTTTAAAAAAACAAAAAAAAAAAAAAACCAGGGTCTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACGTATTGTTTAAAAAAACAAAAAAAAAAAAAAACCAGGGTCTC  1128

seq1  ATATAACCTTAAACTC-ATTTTGTACTTTGGCTGACCTTGAATTC  1187
      |||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATATAACCTTAAACTCGATTTTGTACTTTGGCTGACCTTGAATTC  1173

seq1: chrX_20029358_20030285
seq2: B6Ng01-068I02.g_69_997

seq1  GAATTCCAGGCCAGCCTGGTCTACAAAGTTGGTTCCATGACAGCTAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGCCTGGTCTACAAAGTTGGTTCCATGACAGCTAGAGC  50

seq1  TGTTACACAGAGAAACCCTGTCTCAAACAACAACAACAACAACAACAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACACAGAGAAACCCTGTCTCAAACAACAACAACAACAACAACAACA  100

seq1  ACCCCCCTCCAAATAAAAACAAAAAGGAAGGAAAGAGATAGAGAATCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCTCCAAATAAAAACAAAAAGGAAGGAAAGAGATAGAGAATCAAA  150

seq1  TTATCAATAAATGTCGATAGAGAGAGGTGGCTTAGCAGTTTTGGAACTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAATAAATGTCGATAGAGAGAGGTGGCTTAGCAGTTTTGGAACTAC  200

seq1  TCTACTCCCAACAACCATTTGGCTTAAAACTGTCTGTAATTCCAACTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCCCAACAACCATTTGGCTTAAAACTGTCTGTAATTCCAACTCCA  250

seq1  GAGGATCCAACACCTTTCCTAGCCTTGGGCCTGCACATGCGCACGTTCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCCAACACCTTTCCTAGCCTTGGGCCTGCACATGCGCACGTTCGC  300

seq1  ATACACACACATACACACATGTATGCATGCTTATTTTCTCTGTCACCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACATACACACATGTATGCATGCTTATTTTCTCTGTCACCACA  350

seq1  CACACACAAGATATTTTTAAAAAATGACCAAGTTTGGAAAATAGGCATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAAGATATTTTTAAAAAATGACCAAGTTTGGAAAATAGGCATGA  400

seq1  TTCTCCTTGTCTGATGTATCAGTCACCTAATATTCCATTCTTCATGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTGTCTGATGTATCAGTCACCTAATATTCCATTCTTCATGTAAA  450

seq1  AATTAAGCATGTCAGTTGTATAGTATTAGTATGTAATTGTCTGTATTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGCATGTCAGTTGTATAGTATTAGTATGTAATTGTCTGTATTAGT  500

seq1  ATGCAGATTTAAAGATTTCATGTATTTTATCTTTAGTATATGATCCACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGATTTAAAGATTTCATGTATTTTATCTTTAGTATATGATCCACCT  550

seq1  TTATAATATTTTAAATTAATGAATTAATATTTATTAATGAATTAATATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATATTTTAAATTAATGAATTAATATTTATTAATGAATTAATATTT  600

seq1  TATATCAAGTTAGACTTTGGCTGAGGTTCTCACTCTAGTACTATTCCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAAGTTAGACTTTGGCTGAGGTTCTCACTCTAGTACTATTCCAAC  650

seq1  ACTATATATATACTTTTGTCAAAATAGGTTGGGCATATTTTTATGGAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATATATACTTTTGTCAAAATAGGTTGGGCATATTTTTATGGAAGT  700

seq1  GTTTTAAAAATAAAGTAAGAGAATCAGTCTAAGAATATGGATATGTTT-G  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTTTTAAAAATAAAGTAAGAGAATCAGTCTAAGAATATGGATATGTTTGG  750

seq1  GTTACATAGCAAAGGAAAAATTAAGGTTGC-TAAGCAATCATTATAAAGT  798
      |||||||||||||||||||| ||||||||| ||||||||| || ||||||
seq2  GTTACATAGCAAAGGAAAAA-TAAGGTTGCTTAAGCAATCTTTTTAAAGT  799

seq1  AAGGACAATAACTTGGATTATTTGG-TTGGGCTGAATGTAATTACAGGGG  847
      ||||||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  AAGGACAATAACTTGGA-TATTTGGTTTGGGCTGAATGTAATTACAGGGG  848

seq1  TCTTTGCAAATGG-AAAAATGGAATAGAGATCTAGATCTGATTATAG-AG  895
      |||||||||| || |||||||||||| |||||||||||||||||||| ||
seq2  TCTTTGCAAACGGAAAAAATGGAATAAAGATCTAGATCTGATTATAGAAG  898

seq1  GTTATTATCAGAGAAATGCAACATTGTTTACTC  928
      |||||| || |||||||| ||||||||||||||
seq2  GTTATT-TC-GAGAAATGTAACATTGTTTACTC  929