BAC Information

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BAC

Clone NameB6Ng01-069J12
ChromosomeX (Build37)
Map Location 136,528,685 - 136,680,475
singlet/doubletdoublet
Overlap geneRbm41, Gm719, E230019M04Rik, LOC622213
Upstream geneNrk, Serpina7, 4930513O06Rik, 4933428M09Rik, Mum1l1, LOC675062, Trap1a, C330013F16Rik, EG666359, D330045A20Rik, Rnf128, LOC622432, Tbc1d8b, Ripply1, Cldn2, Morc4
Downstream geneLOC100041446, EG245643, LOC666424, Prps1, Tsc22d3, Mid2, LOC619612, Tex13, LOC632685, Vsig1, Psmd10, Atg4a, LOC100038961, Col4a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069J12.bB6Ng01-069J12.g
ACCDH887855DH887856
length1,1351,096
definitionDH887855|Mus musculus domesticus DNA, BAC clone: B6Ng01-069J12, 5' end.DH887856|Mus musculus domesticus DNA, BAC clone: B6Ng01-069J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,679,316 - 136,680,475)(136,528,685 - 136,529,777)
sequence
gaattcttccagaaattccatgtaaagacaacccattcgttctctgagtt
ctttaacaggctttggcatgcttcagcatagagtaaagtccttcataatg
cttacagtggagcaaaattcttaactcagataaaatacattctttcaaag
aagaactccgccatctccaaattctaccatcctctattaagccattgatg
cttcctgctagatcaaaagtcctggaagctccttcagcccaaagaaccct
ggattcaaagtcaaactgtctgggacatcaagtgttgattctccatctct
gaccttacagaaagaagcagaaactttgcacttaccagttttctacatcc
tttcaactcagtaatcatgggaacccatcaacccagtcctccagtttcta
gactgtcagagagtgagtggtaatgatagagatatctccctagtctgtta
gtttcctcacccccttttgattatctagggcaatctggcccattctacag
tgcttcttcttgccaccacaagattggcccttaattatgaaagcttttgc
ctggaaagctgtgtcagaggttaatgtgactattttttccttctccacag
attcactttactggaaacaaactccccagaatgctgcttagagagttatt
tatctttataattcgaaaaggccatgcacatgttctgcttgactccagct
gaatcttactattcttatttttcctctgatacctcccaccagtctcatca
gccaaaaagaccgagagagagagagagagagagagagagagagagagaga
gagagagagagagagagtaggtcaatagcatgcagccttggccttctaaa
ggacaaagctttttttcccctccaaaaatggtttatcactggatgctaga
agacaaggacatggatggctctccagggcctttccatctcgaatttgaat
gagcttggctgcaagcgatcatagcgatctttgctcatgctttcagctgc
ctatatgctctagatcacactgctgtaaacatgagtggaggcaactcttt
gtggaagatggtcacgtttccacccagctcttcagtctaactcggatctc
agtgtaggctgtgtgagctgagtctgtgaggctag
gaattcacagtgatggggccgcctgttaaaacaagtccaatgaaatccat
aggcaaagtctcttttccattttttgcctaggtgaagcaccagggcaaca
aaatggaattcccccatacatccaggactaaattaacaaatgttaactaa
gtacatgctatacattagatgctgtgttctgttctgagagttcacatttt
taaagaaaagaaacttgctaggcagtggtggtgcacgcctttaatcccag
cacttgggaggcagagtcaggcagatttcagtcaggtcagcctggtctac
agagtgagttccaggacaaccaaggctatacagagaaaccctgtctcgac
aaaaccaaaaagaaaaagaaaaaaaaaaaataaaagaaactggaggggct
agagagatggcatagcagttaagagctcttactgctcttacacaggacct
gggcaagttctcagcactcgcatggcaggccacaaccactggaaactcta
gttccaggagctctaaacccctctggcctctgtaggcactggcacacatg
gggtttacataaactaacgaattcctctccctccctctcgctccttctcc
acccccgcccccacatacaaacacataaaataaatcttctataaaaatct
caaaagagctgccacctatatgaagaattgtagaaaggatgcaactaaat
agcaaatgagcataaagaattataaatgccatgttaggggaaatgcaggg
tgctacagtaggacaaggtgaaagtagttaacccgggcttggtatgatat
acacttaaactttcctccagaaagacacaaaaacaaaatctgattgcatc
tgaagaggttcttctgagaaagtggctaggtgagaggcctgcgccatcaa
gcttcaagagggatagacaaccccgcaagtaaaggtctattagatctgtt
taccaaatcaatacccactcttccatggaaaacagaagtatcgagtgatg
tggaggaggcttcttggagctgcctctcactttctgttccagtttcctca
ggacatgttcttcattcttccacacagcttatttaccctggacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_136679316_136680475
seq2: B6Ng01-069J12.b_46_1180 (reverse)

seq1  CTAGCCTCACCAGACTCAAGCCTCAGCAACAGCCTTACACTGAGATTCTG  50
      ||||||||| ||||||||   ||||   |||||| |||||||||| || |
seq2  CTAGCCTCA-CAGACTCA--GCTCA--CACAGCC-TACACTGAGA-TCCG  43

seq1  AGTTAGACTGAAAGGAGCTGGGGTGGAAACGTGACCATCTTTCCAACAAA  100
      ||||||||||||  ||||| |||||||||||||||||||||  | |||||
seq2  AGTTAGACTGAA--GAGCT-GGGTGGAAACGTGACCATCTT--CCACAAA  88

seq1  GAGTTTGCCCTCCACCTCATGTTTTAACAGCAGTGTTGATCTAAGAAGCA  150
      |||||   |||||| |||||||||  ||||||||| |||||||   ||||
seq2  GAGTT--GCCTCCA-CTCATGTTT--ACAGCAGTG-TGATCTA--GAGCA  130

seq1  TATTAGGGCAGCTGAAAAGCATGGAGCAAAGATCGCTATTGATTCGCCTG  200
      |||   |||||||| ||||||| ||||||||||||||| ||| |||| ||
seq2  TAT--AGGCAGCTG-AAAGCAT-GAGCAAAGATCGCTA-TGA-TCGCTTG  174

seq1  CAGCCAAGCTCATTCAAATTCGAGATGGAAAGGCCCTGGAGAGCCATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAGCTCATTCAAATTCGAGATGGAAAGGCCCTGGAGAGCCATCCA  224

seq1  TGTCCTTGTCTTCTAGCATCCAGTGATAAACCATTTTTTGGAGGGGGAAA  300
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  TGTCCTTGTCTTCTAGCATCCAGTGATAAACCA-TTTTTGGAGGGGAAAA  273

seq1  AAAGCTTTGTCCTTTAGAAGGCCAAGGCTGCATGCTATTGACCTA--CTC  348
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  AAAGCTTTGTCCTTTAGAAGGCCAAGGCTGCATGCTATTGACCTACTCTC  323

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  373

seq1  GGTCTTTTTGGCTGATGAGACTGGTGGGAGGTATCAGAGGAAAAATAAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTTTGGCTGATGAGACTGGTGGGAGGTATCAGAGGAAAAATAAGA  423

seq1  ATAGTAAGATTCAGCTGGAGTCAAGCAGAACATGTGCATGGCCTTTTCGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAGATTCAGCTGGAGTCAAGCAGAACATGTGCATGGCCTTTTCGA  473

seq1  ATTATAAAGATAAATAACTCTCTAAGCAGCATTCTGGGGAGTTTGTTTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAAGATAAATAACTCTCTAAGCAGCATTCTGGGGAGTTTGTTTCC  523

seq1  AGTAAAGTGAATCTGTGGAGAAGGAAAAAATAGTCACATTAACCTCTGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGTGAATCTGTGGAGAAGGAAAAAATAGTCACATTAACCTCTGAC  573

seq1  ACAGCTTTCCAGGCAAAAGCTTTCATAATTAAGGGCCAATCTTGTGGTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTTCCAGGCAAAAGCTTTCATAATTAAGGGCCAATCTTGTGGTGG  623

seq1  CAAGAAGAAGCACTGTAGAATGGGCCAGATTGCCCTAGATAATCAAAAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGAAGCACTGTAGAATGGGCCAGATTGCCCTAGATAATCAAAAGG  673

seq1  GGGTGAGGAAACTAACAGACTAGGGAGATATCTCTATCATTACCACTCAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGGAAACTAACAGACTAGGGAGATATCTCTATCATTACCACTCAC  723

seq1  TCTCTGACAGTCTAGAAACTGGAGGACTGGGTTGATGGGTTCCCATGATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGACAGTCTAGAAACTGGAGGACTGGGTTGATGGGTTCCCATGATT  773

seq1  ACTGAGTTGAAAGGATGTAGAAAACTGGTAAGTGCAAAGTTTCTGCTTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTTGAAAGGATGTAGAAAACTGGTAAGTGCAAAGTTTCTGCTTCT  823

seq1  TTCTGTAAGGTCAGAGATGGAGAATCAACACTTGATGTCCCAGACAGTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAAGGTCAGAGATGGAGAATCAACACTTGATGTCCCAGACAGTTT  873

seq1  GACTTTGAATCCAGGGTTCTTTGGGCTGAAGGAGCTTCCAGGACTTTTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGAATCCAGGGTTCTTTGGGCTGAAGGAGCTTCCAGGACTTTTGA  923

seq1  TCTAGCAGGAAGCATCAATGGCTTAATAGAGGATGGTAGAATTTGGAGAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCAGGAAGCATCAATGGCTTAATAGAGGATGGTAGAATTTGGAGAT  973

seq1  GGCGGAGTTCTTCTTTGAAAGAATGTATTTTATCTGAGTTAAGAATTTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGAGTTCTTCTTTGAAAGAATGTATTTTATCTGAGTTAAGAATTTTG  1023

seq1  CTCCACTGTAAGCATTATGAAGGACTTTACTCTATGCTGAAGCATGCCAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTGTAAGCATTATGAAGGACTTTACTCTATGCTGAAGCATGCCAA  1073

seq1  AGCCTGTTAAAGAACTCAGAGAACGAATGGGTTGTCTTTACATGGAATTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTTAAAGAACTCAGAGAACGAATGGGTTGTCTTTACATGGAATTT  1123

seq1  CTGGAAGAATTC  1160
      ||||||||||||
seq2  CTGGAAGAATTC  1135

seq1: chrX_136528685_136529777
seq2: B6Ng01-069J12.g_67_1162

seq1  GAATTCACAGTGATGGGGCCGCCTGTTAAAACAAGTCCAATGAAATCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTGATGGGGCCGCCTGTTAAAACAAGTCCAATGAAATCCAT  50

seq1  AGGCAAAGTCTCTTTTCCATTTTTTGCCTAGGTGAAGCACCAGGGCAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAGTCTCTTTTCCATTTTTTGCCTAGGTGAAGCACCAGGGCAACA  100

seq1  AAATGGAATTCCCCCATACATCCAGGACTAAATTAACAAATGTTAACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAATTCCCCCATACATCCAGGACTAAATTAACAAATGTTAACTAA  150

seq1  GTACATGCTATACATTAGATGCTGTGTTCTGTTCTGAGAGTTCACATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGCTATACATTAGATGCTGTGTTCTGTTCTGAGAGTTCACATTTT  200

seq1  TAAAGAAAAGAAACTTGCTAGGCAGTGGTGGTGCACGCCTTTAATCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAAGAAACTTGCTAGGCAGTGGTGGTGCACGCCTTTAATCCCAG  250

seq1  CACTTGGGAGGCAGAGTCAGGCAGATTTCAGTCAGGTCAGCCTGGTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGGAGGCAGAGTCAGGCAGATTTCAGTCAGGTCAGCCTGGTCTAC  300

seq1  AGAGTGAGTTCCAGGACAACCAAGGCTATACAGAGAAACCCTGTCTCGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGTTCCAGGACAACCAAGGCTATACAGAGAAACCCTGTCTCGAC  350

seq1  AAAACCAAAAAGAAAAAGAAAAAAAAAAAATAAAAGAAACTGGAGGGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAAAGAAAAAGAAAAAAAAAAAATAAAAGAAACTGGAGGGGCT  400

seq1  AGAGAGATGGCATAGCAGTTAAGAGCTCTTACTGCTCTTACACAGGACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGATGGCATAGCAGTTAAGAGCTCTTACTGCTCTTACACAGGACCT  450

seq1  GGGCAAGTTCTCAGCACTCGCATGGCAGGCCACAACCACTGGAAACTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGTTCTCAGCACTCGCATGGCAGGCCACAACCACTGGAAACTCTA  500

seq1  GTTCCAGGAGCTCTAAACCCCTCTGGCCTCTGTAGGCACTGGCACACATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGAGCTCTAAACCCCTCTGGCCTCTGTAGGCACTGGCACACATG  550

seq1  GGGTTTACATAAACTAACGAATTCCTCTCCCTCCCTCTCGCTCCTTCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTACATAAACTAACGAATTCCTCTCCCTCCCTCTCGCTCCTTCTCC  600

seq1  ACCCCCGCCCCCACATACAAACACATAAAATAAATCTTCTATAAAAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCGCCCCCACATACAAACACATAAAATAAATCTTCTATAAAAATCT  650

seq1  CAAAAGAGCTGCCACCTATATGAAGAATTGTAGAAAGGATGCAACTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAGCTGCCACCTATATGAAGAATTGTAGAAAGGATGCAACTAAAT  700

seq1  AGCAAATGAGCATAAAGAATTATAAATGCCATGTTAGGGGAAATGCAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATGAGCATAAAGAATTATAAATGCCATGTTAGGGGAAATGCAGGG  750

seq1  TGCTACAGTAGGACAAGGTGAAAGTAGTTAACCCGGGCTTGGTATGATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAGTAGGACAAGGTGAAAGTAGTTAACCCGGGCTTGGTATGATAT  800

seq1  ACACTTAAAC-TTCCTCCAGAAAGACACAAAAACAAAATCTGATTGCATC  849
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAAACTTTCCTCCAGAAAGACACAAAAACAAAATCTGATTGCATC  850

seq1  TGAAGAGG-TCTTCTGAAGAAAGTGCCTAGGTGAGAGGCCTGCGCCATCA  898
      |||||||| ||||||| |||||||| ||||||||||||||||||||||||
seq2  TGAAGAGGTTCTTCTG-AGAAAGTGGCTAGGTGAGAGGCCTGCGCCATCA  899

seq1  AGCTTCAAGAGGGATAGACAA-CCCGCAGGTAAGGGTCTATTAGAATCTG  947
      ||||||||||||||||||||| |||||| |||| |||||||||| |||||
seq2  AGCTTCAAGAGGGATAGACAACCCCGCAAGTAAAGGTCTATTAG-ATCTG  948

seq1  TTTA-CAAATCAATACCCACTCTTCAATGG-AGACAGAGGTATCGAGTTG  995
      |||| |||||||||||||||||||| |||| | ||||| |||||||| ||
seq2  TTTACCAAATCAATACCCACTCTTCCATGGAAAACAGAAGTATCGAG-TG  997

seq1  ATGTTGAAGGAGGC-TCTT-GAGCTGCCTCTCACCTTCTGTTTCCAGTTC  1043
      ||| || ||||||| |||| |||||||||||||| ||||| |||||||| 
seq2  ATG-TGGAGGAGGCTTCTTGGAGCTGCCTCTCACTTTCTG-TTCCAGTTT  1045

seq1  CTCCAGGACATGTTCTTCATCCTT-CACACAGC-TATTTACCCTGGAACA  1091
      |  ||||||||||||||||| ||| |||||||| |||||||||||| |||
seq2  CCTCAGGACATGTTCTTCATTCTTCCACACAGCTTATTTACCCTGG-ACA  1094

seq1  GA  1093
      ||
seq2  GA  1096