BAC Information

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BAC

Clone NameB6Ng01-070A01
ChromosomeX (Build37)
Map Location 160,120,119 - 160,121,277
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g, LOC100040610, EG637051, Grpr
Downstream gene1700045I19Rik, Ap1s2, Zrsr2, Car5b, Siah1b, Tmem27, Ace2, Bmx, Pir, Figf, Piga, Asb11, Asb9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070A01.bB6Ng01-070A01.g
ACCDH888140DH888141
length1,2261,144
definitionDH888140|Mus musculus domesticus DNA, BAC clone: B6Ng01-070A01, 5' end.DH888141|Mus musculus domesticus DNA, BAC clone: B6Ng01-070A01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtgcaacccccctgttcctgaaaacaaaaacaaaaacaaaaat
caaccaaccaaacaaaaacccagcaatctggtcctgagcatttttctatt
ctatttctttgggggttatacatctatttaacttgtttatctgatttaat
ttaactttaggaagtggtgcaactattgagaaaatttaggttttccaatt
ttgtggagtataggtttttgaatgatgtaatgattccttggattttcttg
gtgtatgtttttatgcccccccccccgcccctactcctgtttctgatttt
gttaatttggattattctctctgtgtgccttttagttaatttggatatgg
gtttgtctatcttgttgactttctcaaagaaccaactctttgttttgctc
attatttgtaatgttctctttgtttctagttgatttcagccctgaatttg
accatttcttgatgtctactcctcatgggtgtgtttgcttctttctgtcc
tagagctttcagatgtgctgttaagctgctagtgtgagaatattctaatt
tctttatgaagacagtgctatgaactttcctcttagcattgcttttattg
tgtcctttcagtgtgggtacttgtatattcatttccactgaattctagga
agtctttaatttctttatttttgccttgacacagtagtcattcagtaggg
agtcatttctttgagtttgcatgattcctgttttttcttttgttaaaatc
cagttttaatatgtgatggtctgataggatatagggggttaatttaattt
tcttttatctgttgggacttgctttgtgaccaagtatgtagtcagttttg
gagaatgttccatgaagttctgagaagtatattcttttgtgtttaggtga
aatgttctatagatatctgtcatgtccattatttctctgtttgctttttt
tctgatgacctgtccattgaccaaagtgtggaattagcggggactgttca
tgggtgatttagctttgctatgttttcttttccatgtggagtcttgcgat
ggaacataaattggaagtgctctgggggattttcttggaaacatggagct
ggtccaattcattgataattcgctggaaccatttgtagatagaagagacg
catgtgctggccattctggaaacctgacctttcaagaactcttgatggag
cttcttgaccaagaggacagtcttct
gaattctcacaacgtctatatggattattacttgccttcatttcaagtga
cagaaaccagaaaaataataatgcacacaccacaggcaagtaataggcta
ctccaataggtttctcaaggatatacaagacacagaaataaggggaatag
ggaaattttcagctcaagagaatgtatctatacagataagaaattttggc
caaatagctctaaagattgtcatgtaacttcaatgagaaatgtgtctggt
tattccaatggaatatggacaaataagagagagctacctataaaattaga
tttaggctactaaagtgctggacaggggataatttccataaacggtcgaa
gcctgtgccttaattcatatatctggtctcattttccctcctttgtttat
gattctgaaatgaactttaaactctgaataagaagataatcagaaacctc
acaaactaatggctatgcaatttcatttctcaaacacttagaccctgcca
tctctcaaacagctttaattaccacaaaaatagctcaaaatcatcgtggt
actttagcttcttaaaagtttccaggacccaagcaaaatgcctatccttc
ttaatacagcttgaaacaaacctctgcatcttctcagattaaaccaaagc
attcttgctcaattcccagtacatttgatgcttgtgcaataaaatttact
tggtaggtgattaataggaaacaagacactgtcttgtgtttgagttgaac
caagagcatgtattcatagactcatctgatatagtcatccactgttgggc
aacttgacagatatgtttgttcccttgtggaggactacaggtaacagagg
gttacataaaaacctgagtgcaagagagatagtaagaaccagaagatcag
aaagttctgtaagattgtgtctcctagaaatgacagggaagtgtcacccc
aaaaattcaatgacatggctgcctagatagacctgaacaatggtacaggc
atagacatgctgtcatggagagaactggtcagactgaaaaatatacattc
atcatactaaatgaatatatattatatatatataattggacgtaagataa
gagttcataattttgagagggacctggtagagaatggggagggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_160120119_160121277
seq2: B6Ng01-070A01.g_69_1212

seq1  GAATTCTCACAACGTCTATATGGATTATTACTTGCCTTCATTTCAAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACAACGTCTATATGGATTATTACTTGCCTTCATTTCAAGTGA  50

seq1  CAGAAACCAGAAAAATAATAATGCACACACCACAGGCAAGTAATAGGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCAGAAAAATAATAATGCACACACCACAGGCAAGTAATAGGCTA  100

seq1  CTCCAATAGGTTTCTCAAGGATATACAAGACACAGAAATAAGGGGAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATAGGTTTCTCAAGGATATACAAGACACAGAAATAAGGGGAATAG  150

seq1  GGAAATTTTCAGCTCAAGAGAATGTATCTATACAGATAAGAAATTTTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTTCAGCTCAAGAGAATGTATCTATACAGATAAGAAATTTTGGC  200

seq1  CAAATAGCTCTAAAGATTGTCATGTAACTTCAATGAGAAATGTGTCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGCTCTAAAGATTGTCATGTAACTTCAATGAGAAATGTGTCTGGT  250

seq1  TATTCCAATGGAATATGGACAAATAAGAGAGAGCTACCTATAAAATTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAATGGAATATGGACAAATAAGAGAGAGCTACCTATAAAATTAGA  300

seq1  TTTAGGCTACTAAAGTGCTGGACAGGGGATAATTTCCATAAACGGTCGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCTACTAAAGTGCTGGACAGGGGATAATTTCCATAAACGGTCGAA  350

seq1  GCCTGTGCCTTAATTCATATATCTGGTCTCATTTTCCCTCCTTTGTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGCCTTAATTCATATATCTGGTCTCATTTTCCCTCCTTTGTTTAT  400

seq1  GATTCTGAAATGAACTTTAAACTCTGAATAAGAAGATAATCAGAAACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGAAATGAACTTTAAACTCTGAATAAGAAGATAATCAGAAACCTC  450

seq1  ACAAACTAATGGCTATGCAATTTCATTTCTCAAACACTTAGACCCTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTAATGGCTATGCAATTTCATTTCTCAAACACTTAGACCCTGCCA  500

seq1  TCTCTCAAACAGCTTTAATTACCACAAAAATAGCTCAAAATCATCGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAAACAGCTTTAATTACCACAAAAATAGCTCAAAATCATCGTGGT  550

seq1  ACTTTAGCTTCTTAAAAGTTTCCAGGACCCAAGCAAAATGCCTATCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGCTTCTTAAAAGTTTCCAGGACCCAAGCAAAATGCCTATCCTTC  600

seq1  TTAATACAGCTTGAAACAAACCTCTGCATCTTCTCAGATTAAACCAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACAGCTTGAAACAAACCTCTGCATCTTCTCAGATTAAACCAAAGC  650

seq1  ATTCTTGCTCAATTCCCAGTACATTTGATGCTTGTGCAATAAAATTTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGCTCAATTCCCAGTACATTTGATGCTTGTGCAATAAAATTTACT  700

seq1  TGGTAGGTGATTAATAGGAAACAAGACACTGTCTTGTGTTTGAGTTGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGTGATTAATAGGAAACAAGACACTGTCTTGTGTTTGAGTTGAAC  750

seq1  CAAGAGCATGTATTCATAGACTCATCTGATATAGTCATCCACTGTTGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCATGTATTCATAGACTCATCTGATATAGTCATCCACTGTTGGGC  800

seq1  AACTTGACAGATATGTTTGTTCCCTTGTGGAGGACTACAGGTAACAGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGACAGATATGTTTGTTCCCTTGTGGAGGACTACAGGTAACAGAGG  850

seq1  GTTACATAAAAACCTGAGTGCAAGAGAGATAGTAAGAACCAGAAGATCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATAAAAACCTGAGTGCAAGAGAGATAGTAAGAACCAGAAGATCAG  900

seq1  AAAGTTCTGTAAGATTGTGTCTCCTAGAAATGACAGGGAAGTGTCACCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCTGTAAGATTGTGTCTCCTAGAAATGACAGGGAAGTGTCACCCC  950

seq1  AAAAAATTCAATGACATGGCTGCCTAGATAAGACCTGAACAATGGTACAG  1000
       |||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  -AAAAATTCAATGACATGGCTGCCTAGAT-AGACCTGAACAATGGTACAG  998

seq1  GCAATAGACATGCTGTCATGGAGAGATACTGGTCAGACCTGAAACATATA  1050
      || ||||||||||||||||||||||| |||||||||| |||||| |||||
seq2  GC-ATAGACATGCTGTCATGGAGAGA-ACTGGTCAGA-CTGAAAAATATA  1045

seq1  CATTCAATCAATACTAAATGGATATATATATATATATATATATATATATG  1100
      ||||| ||| |||||||||| ||||||||   |||||||||||| ||  |
seq2  CATTC-ATC-ATACTAAATGAATATATAT---TATATATATATA-ATTGG  1089

seq1  ACAGTTAAAGATAAGGAGGTCATAAATTTGAGAGGGACTGTGGTAGAGAA  1150
      || ||  ||||||| ||| |||||| ||||||||||||  ||||||||||
seq2  AC-GT--AAGATAA-GAGTTCATAATTTTGAGAGGGAC-CTGGTAGAGAA  1134

seq1  T-GGGAGGGT  1159
      | ||||||||
seq2  TGGGGAGGGT  1144