BAC Information

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BAC

Clone NameB6Ng01-071I23
ChromosomeX (Build37)
Map Location 86,864,863 - 86,995,438
singlet/doubletdoublet
Overlap genenone
Upstream geneEG245506, LOC667911, LOC100041707, EG436213, LOC667919, LOC100041727, LOC667934, Pet2, EG629419
Downstream gene4932429P05Rik, LOC633246, Nanog-ps1, 4930415L06Rik, EG547215, Gm370, LOC194615, LOC629471
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071I23.bB6Ng01-071I23.g
ACCDH889225DH889226
length9201,214
definitionDH889225|Mus musculus domesticus DNA, BAC clone: B6Ng01-071I23, 5' end.DH889226|Mus musculus domesticus DNA, BAC clone: B6Ng01-071I23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,994,846 - 86,995,438)(86,864,863 - 86,866,124)
sequence
gaattcattttaggccaataatggttcctttatcttaattaggttaacac
gtgttgttttatgatttcagaaaaggctataggctacagtagttattgct
attgctgaagcagttttgtttctctttttccttgtttgaagaaatatatt
tctatttgtttcattagttatatatactcaaaactattatatcactattt
ttatctctgatattttctagggaatcaagaattatatgtaaacaaacacc
atgttctaggaaattttgtagtttcatatatatggattatatattatata
ttcatatatatgtgtgtgtgtgtatgtgaattataaagctataaaattcc
ctacaatacacacacacgcacatgtacatgcacatgtgcacacatttata
ttttcaatttttatctttgggattccccaaatgaaatgctatttcacaga
gaaaatgaatggatttagattacactaataacataaaccatagttcttta
ttttattgtatattttatttacatttcaaatgtaatccccttttccagtc
tgccccaccagaaaccccttatcccctccccctcttcctgcttctatgag
ggtgctctcccacccacccatcactctcccacctccctgcccttgcattc
ccctgcactgtggaatcaagatttcacaggaccaagggcatgtcctccca
ctgatgcctgataaggccatcatgtgtttggagccatgggtccctccatg
tttactccttggttggtagtttagtcactgggagctatggaatgtcttgt
tggttgatagtgtagttctccctttggggttgcaaaccccttcagatcct
tcagtcctttctctagttcctccattggagaaaccatgtgcagtccaatg
gctggctaagagcatgcacc
gaattctaagaacagatttgtgcacatgagtgcatatgctggatgagacc
acagatggcaacagatattctgaagccagagttagatgaggctatgggtt
tgagcacaggaatacaatgcctgttgaggccacaagcagacagtggacct
cctgaagctgaaattgaaggaggctctgtgcacttttttttttttttaaa
cagcctgcagttctttgggagagaagtgccacttttgactactgaaccat
ttttcctggctccggaagaacctttggagctagtttacaactggaatttg
gaagcatttcataaacatggtagataaaatatgtactactgtaagcacag
cttagaaatgtacataatactgacaggaatgaaggtttatcatccttgtt
tcactgagaaaaaaatataactgttttgttcatcacttgtgactttgaag
aaaatccagcttaaagtgacagatcatccttgtagtggtgtgcatgtctt
taataccagtaaccaaagggacagagagtcaagaagatctcgtaagttcg
agaccagctagtaccagcacagccaaggctacacaaagaatccctgtctt
gacaaaaacaaacaaaacaaagcaaaacaaaacaaaacaaaatgtgacag
gctagattatctgatagaagaaatgtcaaaactccacgatattgaggctt
ggtgtgaataaaactattaaaatgtaagtaagaaacatggcagggtttga
agtatttttccattttgctgagaaaaggagcagatttgaagacatcatct
aactaaggagcatgcttagaagtaataagaaagctgcatgaatctcaaga
tttggcagatacatagaagtaaaaatcagtttcaaagaattctttgagaa
gtgccttgcttgtccaagaacacctatgtagacggtctcgtgctggagaa
gtcatagtccacatgcttttggcatgtaaatgctagggcttgggagtctg
aagcatcagtgaaatgttcaaaggaaagccagagacaacttgaaagtact
tactgacaagaaaaatgctggcctatgcgagtgatccaagtcccaattga
aacctgaagttaaacccaggatccatgcagaggctagatgctgtaatcgt
ccagacacgtgccatggtacgcaggcatctcttaggtaatgatcatgtaa
tatcttctcaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_86994846_86995438
seq2: B6Ng01-071I23.b_44_636 (reverse)

seq1  AAGCAGGAAGAGGGGGAGGGGATAAGGGGTTTCTGGTGGGGCAGACTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGAAGAGGGGGAGGGGATAAGGGGTTTCTGGTGGGGCAGACTGGA  50

seq1  AAAGGGGATTACATTTGAAATGTAAATAAAATATACAATAAAATAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGATTACATTTGAAATGTAAATAAAATATACAATAAAATAAAGAA  100

seq1  CTATGGTTTATGTTATTAGTGTAATCTAAATCCATTCATTTTCTCTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTTTATGTTATTAGTGTAATCTAAATCCATTCATTTTCTCTGTGA  150

seq1  AATAGCATTTCATTTGGGGAATCCCAAAGATAAAAATTGAAAATATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCATTTCATTTGGGGAATCCCAAAGATAAAAATTGAAAATATAAAT  200

seq1  GTGTGCACATGTGCATGTACATGTGCGTGTGTGTGTATTGTAGGGAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCACATGTGCATGTACATGTGCGTGTGTGTGTATTGTAGGGAATTT  250

seq1  TATAGCTTTATAATTCACATACACACACACACATATATATGAATATATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTTTATAATTCACATACACACACACACATATATATGAATATATAA  300

seq1  TATATAATCCATATATATGAAACTACAAAATTTCCTAGAACATGGTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATCCATATATATGAAACTACAAAATTTCCTAGAACATGGTGTTT  350

seq1  GTTTACATATAATTCTTGATTCCCTAGAAAATATCAGAGATAAAAATAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACATATAATTCTTGATTCCCTAGAAAATATCAGAGATAAAAATAGT  400

seq1  GATATAATAGTTTTGAGTATATATAACTAATGAAACAAATAGAAATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAATAGTTTTGAGTATATATAACTAATGAAACAAATAGAAATATAT  450

seq1  TTCTTCAAACAAGGAAAAAGAGAAACAAAACTGCTTCAGCAATAGCAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAAACAAGGAAAAAGAGAAACAAAACTGCTTCAGCAATAGCAATA  500

seq1  ACTACTGTAGCCTATAGCCTTTTCTGAAATCATAAAACAACACGTGTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGTAGCCTATAGCCTTTTCTGAAATCATAAAACAACACGTGTTAA  550

seq1  CCTAATTAAGATAAAGGAACCATTATTGGCCTAAAATGAATTC  593
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTAAGATAAAGGAACCATTATTGGCCTAAAATGAATTC  593

seq1: chrX_86864863_86866124
seq2: B6Ng01-071I23.g_63_1276

seq1  GAATTCTAAGAACAGATTTGTGCACATGAGTGCATATGCTGGATGAGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGAACAGATTTGTGCACATGAGTGCATATGCTGGATGAGACC  50

seq1  ACAGATGGCAACAGATATTCTGAAGCCAGAGTTAGATGAGGCTATGGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGGCAACAGATATTCTGAAGCCAGAGTTAGATGAGGCTATGGGTT  100

seq1  TGAGCACAGGAATACAATGCCTGTTGAGGCCACAAGCAGACAGTGGACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACAGGAATACAATGCCTGTTGAGGCCACAAGCAGACAGTGGACCT  150

seq1  CCTGAAGCTGAAATTGAAGGAGGCTCTGTGCACTTTTTTTTTTTTTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGCTGAAATTGAAGGAGGCTCTGTGCACTTTTTTTTTTTTTTAAA  200

seq1  CAGCCTGCAGTTCTTTGGGAGAGAAGTGCCACTTTTGACTACTGAACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGCAGTTCTTTGGGAGAGAAGTGCCACTTTTGACTACTGAACCAT  250

seq1  TTTTCCTGGCTCCGGAAGAACCTTTGGAGCTAGTTTACAACTGGAATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGGCTCCGGAAGAACCTTTGGAGCTAGTTTACAACTGGAATTTG  300

seq1  GAAGCATTTCATAAACATGGTAGATAAAATATGTACTACTGTAAGCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATTTCATAAACATGGTAGATAAAATATGTACTACTGTAAGCACAG  350

seq1  CTTAGAAATGTACATAATACTGACAGGAATGAAGGTTTATCATCCTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAATGTACATAATACTGACAGGAATGAAGGTTTATCATCCTTGTT  400

seq1  TCACTGAGAAAAAAATATAACTGTTTTGTTCATCACTTGTGACTTTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAGAAAAAAATATAACTGTTTTGTTCATCACTTGTGACTTTGAAG  450

seq1  AAAATCCAGCTTAAAGTGACAGATCATCCTTGTAGTGGTGTGCATGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCAGCTTAAAGTGACAGATCATCCTTGTAGTGGTGTGCATGTCTT  500

seq1  TAATACCAGTAACCAAAGGGACAGAGAGTCAAGAAGATCTCGTAAGTTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCAGTAACCAAAGGGACAGAGAGTCAAGAAGATCTCGTAAGTTCG  550

seq1  AGACCAGCTAGTACCAGCACAGCCAAGGCTACACAAAGAATCCCTGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGCTAGTACCAGCACAGCCAAGGCTACACAAAGAATCCCTGTCTT  600

seq1  GACAAAAACAAACAAAACAAAGCAAAACAAAACAAAACAAAATGTGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAACAAACAAAACAAAGCAAAACAAAACAAAACAAAATGTGACAG  650

seq1  GCTAGATTATCTGATAGAAGAAATGTCAAAACTCCACGATATTGAGGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGATTATCTGATAGAAGAAATGTCAAAACTCCACGATATTGAGGCTT  700

seq1  GGTGTGAATAAAACTATTAAAATGTAAGTAAGAAACATGGCAGGGTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGAATAAAACTATTAAAATGTAAGTAAGAAACATGGCAGGGTTTGA  750

seq1  AGTATTTTTCCATTTTGCTGAGAAAAGGAGCAGATTTGAAGACATCATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTTCCATTTTGCTGAGAAAAGGAGCAGATTTGAAGACATCATCT  800

seq1  AACTAAGGAGCATGCTTAGAAGTAATAAGAAAGCTGCATGAATCTCAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGGAGCATGCTTAGAAGTAATAAGAAAGCTGCATGAATCTCAAGA  850

seq1  TTTGGCAGATACATAGAAGTAAAAATCAGTTTCAAAGAATTCTTTGAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCAGATACATAGAAGTAAAAATCAGTTTCAAAGAATTCTTTGAGAA  900

seq1  GTGCCTTGCTTGTCCAAGAACACCTATGTTAGACGGGTTCTCGTGCTGGA  950
      |||||||||||||||||||||||||||| |||||||  ||||||||||||
seq2  GTGCCTTGCTTGTCCAAGAACACCTATG-TAGACGG--TCTCGTGCTGGA  947

seq1  GAAAGTCATAGTCCACATGCTTTTGGCATGTAAAATGCTAGGGCTTGGGA  1000
      | ||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  G-AAGTCATAGTCCACATGCTTTTGGCATGT-AAATGCTAGGGCTTGGGA  995

seq1  GTCCTGAAGGCATCAAGTGAGATG-TCAAAGGAAAGCCAGGAGGACAACT  1049
      || ||||| ||||| ||||| ||| |||||||||||||||   |||||||
seq2  GT-CTGAA-GCATC-AGTGAAATGTTCAAAGGAAAGCCAG--AGACAACT  1040

seq1  TGAAAGTAACTACTGACAAG-AAAATGCTTGGGGCTATGCGAGTGAATCC  1098
      ||||||||  |||||||||| ||||||||  || ||||||||||| ||||
seq2  TGAAAGTACTTACTGACAAGAAAAATGCT--GGCCTATGCGAGTG-ATCC  1087

seq1  AAAGTCACAAATGGAACACTAGAAAGGTAAAAACACCAGGAAACCATTGA  1148
       ||||| ||| || ||| ||   ||| ||||    ||||| | ||||  |
seq2  -AAGTCCCAATTGAAAC-CT--GAAGTTAAA---CCCAGG-ATCCATGCA  1129

seq1  AAGAAGGCATAGATAGCATGTTAAATCAGTCCAAGACAGTGGCCATGTGG  1198
          |||| ||||| || |||  |||| |||| |||||   |||||   |
seq2  ---GAGGC-TAGAT-GC-TGT--AATC-GTCC-AGACACGTGCCAT---G  1166

seq1  GTTTCAACCAGCAAAGGCTATCTATAGTAGTATAATTGATTCAATTTGTA  1248
      ||    ||  ||  |||| |||| |  |||  ||| ||| |||   ||||
seq2  GT----AC--GC--AGGC-ATCTCT--TAG-GTAA-TGA-TCA---TGTA  1199

seq1  ATATCTTC-CAATGG  1262
      |||||||| ||||||
seq2  ATATCTTCTCAATGG  1214