BAC Information

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BAC

Clone NameB6Ng01-071N16
ChromosomeX (Build37)
Map Location 16,972,902 - 16,974,134
singlet/doubletsinglet
Overlap genenone
Upstream geneCypt6, LOC100038939, LOC668993, Maoa, Maob, Ndph, LOC100043063, Efhc2
Downstream geneFundc1, EG278181, EG668994, EG436196, EG331391, Dusp21, LOC100043951, Utx, LOC100043952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071N16.bB6Ng01-071N16.g
ACCDH889431DH889432
length1,2371,213
definitionDH889431|Mus musculus domesticus DNA, BAC clone: B6Ng01-071N16, 5' end.DH889432|Mus musculus domesticus DNA, BAC clone: B6Ng01-071N16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactggataacaataaattcaaagtatcataggttttgttggcag
caatttgtcaagtactttcacttttccttggtagctggctattgacaaat
acaagttcttttatacttgtattgattactaatattaatttttatatcac
attatacataacaccgtaatcatatttgtcaattttctatctacatgtct
gtatttctagttagccatctatattttggttacaaaatggttacggctga
agcagggttcagggagttcaagggcacttcaacagagggagatacagagc
tcataggaatgaagaaaatccctgcagtgttcaggtattaatgaattaag
ttggagaaatgttagaggcacagaacaatgaagttgagctgcagaggctg
caaggtcaccgagttgagctgggtgttagggcagagttgagctccagaga
gaagttgtgagcttgtggaagtgaaagtcatggattctaaatgcctgaat
gcagcaccatggcaggacaagttgcaagactgatccagaatgttgactag
gtcgatggaaatcagtttgcatgaactatatcaacagtgggaatctaagt
taaactgatgcccccccaccccttcccctacaaccaggtacagtttggtc
ctttgatgtacacattggctggtcagatgacatggtggtgggagctgtca
ccagtgcagtgttagatacccccttcttaatggggtcttgcactcttggt
tagtctattgtgtttcagaactttgggggcctggcattctgatgtgactt
tcgtatacccatatgttctgatctattctgataagtttatctattttggt
agtaccttctgttctttttcattgttcttaaaataaattatttatttatt
tatttattatttatttatttattatttatttaatgtgactgttgagtgac
tgcatggtgcctatatacaacctgtgtgtctggtgtctacagaggaaaga
agaggaatatcagattccctggaactgggagttacaaacagttgtagctg
ctgtgtgggtactggaaattggaccaacgttcctagaagagcagcccaat
gttactttaagccacacctggagcccctctcccagcccccagggtcggta
ctacttactttagtccaaggttacaagtctgtgccttgagtgcgtcgctg
gccagaattgtgtcggtgcacaagtggaagtttgaat
gaattctgtactaaaaccataagctctggtttggttttggtagggagact
tttaaacattacttctgtaggactgtttaaattgcctctctgatattgat
ttaatttttgtcagtggtaggcatcacaaaaattatccatttcttttaga
ctttccaatttgatggaatatgggcttttaaagtatgtccttatgattct
ctagacttcctccatgtctgttgttttgtcccccttttatttctaatttt
gttaatttgcatacttgcactgcattgtagttaatttaaataaggctttg
tctatcatattaattttttcgaagaaccaactctttgtttcattgaatct
ttgtaaatattattattttgtttctatttaatttattgtggtcctgagtt
tgattatttcttgccatctacttctcttgggtttgattacttcttttgtt
ctagatttttcaggtgtgttgtgaggtggctagtattagatatctttttt
ttctttctttctttctttctttctttctttctttctttcttcctttcttt
ctttctttctttcttttttttttaagtgtgtgcttagtgctatggacttt
tgtcttattcattgtgtcccataagtttggatatgctgggtgttcatttt
ttattgaattctaggaaaattttagttttttcttaacttctatcttgatc
tatatttcattcagtccaagagttgtttggtttccatgaatttttaagct
ttctgatgtttttcatgttgttaatatccgtctttaaactgtgatggtct
gataggatgcagggaattacttgaattttcttgtatctgttgaggcttgc
tttgtgaccaagtatgtagacaattttggaggtagttccaggaagtgcag
agaagaagtatattcttttgtgcttgttctataaatatctgttagtccat
ttgctttgtaatatctgttagcttcatattctctgtatttgtctggatga
ctcatccattggtggagagtaggtattgagtctccattatcatgtggagg
gttgattttgatttagctgtagagtttactcttacaactttgagtgctct
gcatcggatgatgttaaaataagaattgaatcgtgggaattcctagagag
ttgattcacagtcctgaaacctgagccattggctagggtaaagtatatta
taccatggctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_16972902_16974134
seq2: B6Ng01-071N16.b_42_1279

seq1  GGAATTCACTGGATAACAATAAATTCAAAGTATCATAGGTTTTGTTGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCACTGGATAACAATAAATTCAAAGTATCATAGGTTTTGTTGGCA  50

seq1  GCAATTTGTCAAGTACTTTCACTTTTCCTTGGTAGCTGGCTATTGACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTGTCAAGTACTTTCACTTTTCCTTGGTAGCTGGCTATTGACAAA  100

seq1  TACAAGTTCTTTTATACTTGTATTGATTACTAATATTAATTTTTATATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTTCTTTTATACTTGTATTGATTACTAATATTAATTTTTATATCA  150

seq1  CATTATACATAACACCGTAATCATATTTGTCAATTTTCTATCTACATGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATACATAACACCGTAATCATATTTGTCAATTTTCTATCTACATGTC  200

seq1  TGTATTTCTAGTTAGCCATCTATATTTTGGTTACAAAATGGTTACGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCTAGTTAGCCATCTATATTTTGGTTACAAAATGGTTACGGCTG  250

seq1  AAGCAGGGTTCAGGGAGTTCAAGGGCACTTCAACAGAGGGAGATACAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGGTTCAGGGAGTTCAAGGGCACTTCAACAGAGGGAGATACAGAG  300

seq1  CTCATAGGAATGAAGAAAATCCCTGCAGTGTTCAGGTATTAATGAATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGGAATGAAGAAAATCCCTGCAGTGTTCAGGTATTAATGAATTAA  350

seq1  GTTGGAGAAATGTTAGAGGCACAGAACAATGAAGTTGAGCTGCAGAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGAAATGTTAGAGGCACAGAACAATGAAGTTGAGCTGCAGAGGCT  400

seq1  GCAAGGTCACCGAGTTGAGCTGGGTGTTAGGGCAGAGTTGAGCTCCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTCACCGAGTTGAGCTGGGTGTTAGGGCAGAGTTGAGCTCCAGAG  450

seq1  AGAAGTTGTGAGCTTGTGGAAGTGAAAGTCATGGATTCTAAATGCCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGTGAGCTTGTGGAAGTGAAAGTCATGGATTCTAAATGCCTGAA  500

seq1  TGCAGCACCATGGCAGGACAAGTTGCAAGACTGATCCAGAATGTTGACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCACCATGGCAGGACAAGTTGCAAGACTGATCCAGAATGTTGACTA  550

seq1  GGTCGATGGAAATCAGTTTGCATGAACTATATCAACAGTGGGAATCTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGATGGAAATCAGTTTGCATGAACTATATCAACAGTGGGAATCTAAG  600

seq1  TTAAACTGATGCCCCCCCACCCCTTCCCCTACAACCAGGTACAGTTTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTGATGCCCCCCCACCCCTTCCCCTACAACCAGGTACAGTTTGGT  650

seq1  CCTTTGATGTACACATTGGCTGGTCAGATGACATGGTGGTGGGAGCTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGATGTACACATTGGCTGGTCAGATGACATGGTGGTGGGAGCTGTC  700

seq1  ACCAGTGCAGTGTTAGATACCCCCTTCTTAATGGGGTCTTGCACTCTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGCAGTGTTAGATACCCCCTTCTTAATGGGGTCTTGCACTCTTGG  750

seq1  TTAGTCTATTGTGTTTCAGAACTTTGGGGGCCTGGCATTCTGATGTGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTATTGTGTTTCAGAACTTTGGGGGCCTGGCATTCTGATGTGACT  800

seq1  TTCGTATACCCATATGTTCTGATCTATTCTGATAAGTTTATCTATTTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTATACCCATATGTTCTGATCTATTCTGATAAGTTTATCTATTTTGG  850

seq1  TAGTACCTTCTGTTCTTTTTCATTGTTCTTAAAATAAATTATTTATTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACCTTCTGTTCTTTTTCATTGTTCTTAAAATAAATTATTTATTTAT  900

seq1  TTATTTATTTATTTATTTATTTATTTATTTATTTAATGTGACTGTTTGAG  950
      ||||||| ||||||||||||||| |||||||||||||||||||| |||||
seq2  TTATTTA-TTATTTATTTATTTA-TTATTTATTTAATGTGACTG-TTGAG  947

seq1  TGACTGCATGGTGCCTATATACAACCTGTGTGTCTGGTGTCTACAGAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCATGGTGCCTATATACAACCTGTGTGTCTGGTGTCTACAGAGGA  997

seq1  CAGAAGA-GAATATCAGATTCCCTGGAACT-GGAGTTACAAACAGTTGTT  1048
       |||||| |||||||||||||||||||||| ||||||||||||||||| |
seq2  AAGAAGAGGAATATCAGATTCCCTGGAACTGGGAGTTACAAACAGTTG-T  1046

seq1  AGCTGCTGTGTGGGTACTGAAAATTGGACCAACGTTCTTTAGAAGAGCAG  1098
      ||||||||||||||||||| |||||||||||||||||  |||||||||||
seq2  AGCTGCTGTGTGGGTACTGGAAATTGGACCAACGTTC-CTAGAAGAGCAG  1095

seq1  -CCAATG-TAC-TTAAG-CACAC--TGAG-CACTCT-CCAGCCCC--AGG  1138
       |||||| ||| ||||| |||||   ||| | |||| ||||||||   ||
seq2  CCCAATGTTACTTTAAGCCACACCTGGAGCCCCTCTCCCAGCCCCCAGGG  1145

seq1  TC-GTACTACTTACTTATAGGTACAAGG-TACCAGTCTGTGCCTTATGGA  1186
      || ||||||||||||| || || ||||| ||| ||||||||||||  |  
seq2  TCGGTACTACTTACTT-TA-GTCCAAGGTTACAAGTCTGTGCCTTGAGTG  1193

seq1  TGCTGCTGGGCAAGTAATGTTGTTTGTGTGCACAA--TGAAGTTTGAAT  1233
       |  ||||| ||   ||  |||| |  ||||||||   |||||||||||
seq2  CGTCGCTGGCCA--GAA--TTGTGTCGGTGCACAAGTGGAAGTTTGAAT  1238