BAC Information

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BAC

Clone NameB6Ng01-072N11
ChromosomeX (Build37)
Map Location 158,252,372 - 158,450,620
singlet/doubletdoublet
Overlap geneGm47, Nhs
Upstream geneGja6, Scml2, LOC414364, Prkaca-ps1, Rai2
Downstream geneReps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072N11.bB6Ng01-072N11.g
ACCDH890138DH890139
length1,1281,110
definitionDH890138|Mus musculus domesticus DNA, BAC clone: B6Ng01-072N11, 5' end.DH890139|Mus musculus domesticus DNA, BAC clone: B6Ng01-072N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,449,483 - 158,450,620)(158,252,372 - 158,253,464)
sequence
gaattcagttgaatgaacattataaacataaaggcaactgtttagaaaat
tatttccaacaatttccacaagctccagttttttgtttttgttttgattc
gtgaactaaataactacctagacacgattcattttgagagctttggagct
tgaggagaaaaaaaagcaaggggtgtttatctaccttgttggacctccca
gaacatacttagacagtgctcaatacttcaagtagccaagttttctgtct
aaaggctttatcctagtctgcaagcagagtaggctaaaagcatttgaagt
tagtgtttttaggaaccatttttacacactgaaggacctaagttagaata
tcagtaccttagattccttggtcctcaggtagaatggctttgtcttgtgt
tattgtcttactggattccctggtaggattgagcctcagatgcccatgct
ggaaactagttgcattgactcttcacaccaggattaactttgaagcaaat
tcctcctaagacaacattccagtgtaccttaaagaatcaataatgtgatt
catagaaatacaggataaaggttgagttaccattgtctttgatcttggga
aattctattgattccttgtgatctcccttttcctataaaagcaaggctca
tgatctctttctggtagaatattatgaatactatgggttggacagtgatt
tggtccatgggatttggtccaggccatatggcacttgtagatatacccac
tacaccagttgaagatgcccttccctcataatggtaatgactagaaaaat
ctccataccagagattattgattatctccaatatattcaagaggcaaccc
tccttgattgataattcctaacaaggtgcttgtgaggtccattctaatct
tgacatttcaagattagtttattgatcgagagcttcagatgtgggagcaa
cacttatttagttttaggacactgttgagtggtgactcttgattgtataa
tgtcagaagcaactactgacttgttttcttctttctaaacatacgggaaa
gtacattaacgtcatctctactttacttggtcaagttgcccttcattctt
tgcaggctctctgcatctaatatgaggt
gaattcttagctaaatgtccaaagttgataaaaatataaagactctaaat
atagtaagtatgaatcttcaaaatatagtcagaattcttccaaactactc
attaggtacactttttagataaaatgaatgatcactctatatatccaaaa
atttatctaaacacttgtaaaaaatatttagttgtctgaagctcattaga
tattttataaacttcattttctcttttaaatctgaatagaggaaaataaa
ttatatggctactgcttttttccccctgaaaagtggtagaacatgaaaag
tatactccagtaatatacagaaaacatatccaataagggtaactatatat
cctttaatttctcttctgtaaaaaatttcaccactttaattatgggagtt
attagtttcttatatttcctctttagttgctttaaaaatattcataaaga
taaagccaaatcaaaggtagctttttctgtttctttcatgaagcatgttt
ataaactataaaatgaaaacattttaaagacagaataaactaccagtctg
tatatgctaatattaatgttaaatgtatcttgaaacagactttgactata
atgttaaaattctagttataacatatgttataagaatcttcttcaaaaca
aaaactaatgagcatagggactcatctgtgcattaaggaagaatttatga
gaacatttaaagttatacaaacattttttttttactggccacagtttact
ttttctttaagcgttctaatgtagttttcgaacttcatggctactccaac
ctttacccccatatattttatcattgtatcactactgatcagcagcatag
ctttcccatcgatatcctatagaaagaagaattttgaaatgattaacagt
aatgttagacgaggagttgtttttttgtatataagaacatgtaaaactaa
atcatctccttacggttataaaatctttgaatatgtatctcctatataaa
actattcaaaatatcattgaatagcaataggataattttggagcttgtat
atcatataattttaggaaaaagcaatttaactattaatacttaacatgat
ataatttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_158449483_158450620
seq2: B6Ng01-072N11.b_43_1170 (reverse)

seq1  ACCTCATTATTAGATGCAGAGGAGCCCTGCCAAAAGAATGAAGGGCAAAC  50
      |||||| ||||||||||||| ||| |||||  |||||||||||||| |||
seq2  ACCTCA-TATTAGATGCAGA-GAG-CCTGC--AAAGAATGAAGGGC-AAC  44

seq1  TTGACCAAGTAAAGTAGAAGAATGACGTTAAATGTACTTTCCCCCTATGT  100
      ||||||||||||||||||   |||||||| |||||||||| ||| |||| 
seq2  TTGACCAAGTAAAGTAGA--GATGACGTT-AATGTACTTT-CCCGTATG-  89

seq1  TTTAGAAA-AAGGAAACAAGTCAGTAGTTGCTTCTGACATTATACAATCA  149
      |||||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAGAAGAAAACAAGTCAGTAGTTGCTTCTGACATTATACAATCA  139

seq1  AGAGTCACCACTCAACAGTGTCCCTAAAACTAAATAAGTGTTGCT-CCAC  198
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  AGAGTCACCACTCAACAGTGT-CCTAAAACTAAATAAGTGTTGCTCCCAC  188

seq1  ATCTGAAGCTCTCGATCAATAAACTAATCTTGAAATGTCAAGATTAGAAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAGCTCTCGATCAATAAACTAATCTTGAAATGTCAAGATTAGAAT  238

seq1  GGACCTCACAAGCACCTTGTTAGGAATTATCAATCAAGGAGGGTTGCCTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCACAAGCACCTTGTTAGGAATTATCAATCAAGGAGGGTTGCCTC  288

seq1  TTGAATATATTGGAGATAATCAATAATCTCTGGTATGGAGATTTTTCTAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATATATTGGAGATAATCAATAATCTCTGGTATGGAGATTTTTCTAG  338

seq1  TCATTACCATTATGAGGGAAGGGCATCTTCAACTGGTGTAGTGGGTATAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACCATTATGAGGGAAGGGCATCTTCAACTGGTGTAGTGGGTATAT  388

seq1  CTACAAGTGCCATATGGCCTGGACCAAATCCCATGGACCAAATCACTGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGTGCCATATGGCCTGGACCAAATCCCATGGACCAAATCACTGTC  438

seq1  CAACCCATAGTATTCATAATATTCTACCAGAAAGAGATCATGAGCCTTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCATAGTATTCATAATATTCTACCAGAAAGAGATCATGAGCCTTGC  488

seq1  TTTTATAGGAAAAGGGAGATCACAAGGAATCAATAGAATTTCCCAAGATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAGGAAAAGGGAGATCACAAGGAATCAATAGAATTTCCCAAGATC  538

seq1  AAAGACAATGGTAACTCAACCTTTATCCTGTATTTCTATGAATCACATTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAATGGTAACTCAACCTTTATCCTGTATTTCTATGAATCACATTA  588

seq1  TTGATTCTTTAAGGTACACTGGAATGTTGTCTTAGGAGGAATTTGCTTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCTTTAAGGTACACTGGAATGTTGTCTTAGGAGGAATTTGCTTCA  638

seq1  AAGTTAATCCTGGTGTGAAGAGTCAATGCAACTAGTTTCCAGCATGGGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAATCCTGGTGTGAAGAGTCAATGCAACTAGTTTCCAGCATGGGCA  688

seq1  TCTGAGGCTCAATCCTACCAGGGAATCCAGTAAGACAATAACACAAGACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGCTCAATCCTACCAGGGAATCCAGTAAGACAATAACACAAGACA  738

seq1  AAGCCATTCTACCTGAGGACCAAGGAATCTAAGGTACTGATATTCTAACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATTCTACCTGAGGACCAAGGAATCTAAGGTACTGATATTCTAACT  788

seq1  TAGGTCCTTCAGTGTGTAAAAATGGTTCCTAAAAACACTAACTTCAAATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCCTTCAGTGTGTAAAAATGGTTCCTAAAAACACTAACTTCAAATG  838

seq1  CTTTTAGCCTACTCTGCTTGCAGACTAGGATAAAGCCTTTAGACAGAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGCCTACTCTGCTTGCAGACTAGGATAAAGCCTTTAGACAGAAAA  888

seq1  CTTGGCTACTTGAAGTATTGAGCACTGTCTAAGTATGTTCTGGGAGGTCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTACTTGAAGTATTGAGCACTGTCTAAGTATGTTCTGGGAGGTCC  938

seq1  AACAAGGTAGATAAACACCCCTTGCTTTTTTTTCTCCTCAAGCTCCAAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGTAGATAAACACCCCTTGCTTTTTTTTCTCCTCAAGCTCCAAAG  988

seq1  CTCTCAAAATGAATCGTGTCTAGGTAGTTATTTAGTTCACGAATCAAAAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAAATGAATCGTGTCTAGGTAGTTATTTAGTTCACGAATCAAAAC  1038

seq1  AAAAACAAAAAACTGGAGCTTGTGGAAATTGTTGGAAATAATTTTCTAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAAACTGGAGCTTGTGGAAATTGTTGGAAATAATTTTCTAAA  1088

seq1  CAGTTGCCTTTATGTTTATAATGTTCATTCAACTGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCCTTTATGTTTATAATGTTCATTCAACTGAATTC  1128

seq1: chrX_158252372_158253464
seq2: B6Ng01-072N11.g_69_1178

seq1  GAATTCTTAGCTAAATGTCCAAAGTTGATAAAAATATAAAGACTCTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGCTAAATGTCCAAAGTTGATAAAAATATAAAGACTCTAAAT  50

seq1  ATAGTAAGTATGAATCTTCAAAATATAGTCAGAATTCTTCCAAACTACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAGTATGAATCTTCAAAATATAGTCAGAATTCTTCCAAACTACTC  100

seq1  ATTAGGTACACTTTTTAGATAAAATGAATGATCACTCTATATATCCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTACACTTTTTAGATAAAATGAATGATCACTCTATATATCCAAAA  150

seq1  ATTTATCTAAACACTTGTAAAAAATATTTAGTTGTCTGAAGCTCATTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCTAAACACTTGTAAAAAATATTTAGTTGTCTGAAGCTCATTAGA  200

seq1  TATTTTATAAACTTCATTTTCTCTTTTAAATCTGAATAGAGGAAAATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATAAACTTCATTTTCTCTTTTAAATCTGAATAGAGGAAAATAAA  250

seq1  TTATATGGCTACTGCTTTTTTCCCCCTGAAAAGTGGTAGAACATGAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGGCTACTGCTTTTTTCCCCCTGAAAAGTGGTAGAACATGAAAAG  300

seq1  TATACTCCAGTAATATACAGAAAACATATCCAATAAGGGTAACTATATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCCAGTAATATACAGAAAACATATCCAATAAGGGTAACTATATAT  350

seq1  CCTTTAATTTCTCTTCTGTAAAAAATTTCACCACTTTAATTATGGGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATTTCTCTTCTGTAAAAAATTTCACCACTTTAATTATGGGAGTT  400

seq1  ATTAGTTTCTTATATTTCCTCTTTAGTTGCTTTAAAAATATTCATAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTTCTTATATTTCCTCTTTAGTTGCTTTAAAAATATTCATAAAGA  450

seq1  TAAAGCCAAATCAAAGGTAGCTTTTTCTGTTTCTTTCATGAAGCATGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCAAATCAAAGGTAGCTTTTTCTGTTTCTTTCATGAAGCATGTTT  500

seq1  ATAAACTATAAAATGAAAACATTTTAAAGACAGAATAAACTACCAGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTATAAAATGAAAACATTTTAAAGACAGAATAAACTACCAGTCTG  550

seq1  TATATGCTAATATTAATGTTAAATGTATCTTGAAACAGACTTTGACTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCTAATATTAATGTTAAATGTATCTTGAAACAGACTTTGACTATA  600

seq1  ATGTTAAAATTCTAGTTATAACATATGTTATAAGAATCTTCTTCAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAAATTCTAGTTATAACATATGTTATAAGAATCTTCTTCAAAACA  650

seq1  AAAACTAATGAGCATAGGGACTCATCTGTGCATTAAGGAAGAATTTATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAATGAGCATAGGGACTCATCTGTGCATTAAGGAAGAATTTATGA  700

seq1  GAACATTTAAAGTTATACAAACATTTTTTTTTTACTGGCCACAGTTTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTAAAGTTATACAAACATTTTTTTTTTACTGGCCACAGTTTACT  750

seq1  TTTTCTTTAAGCGTTCTAATGTAGTTTTCGAACTTCATGGCTACTCCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTAAGCGTTCTAATGTAGTTTTCGAACTTCATGGCTACTCCAAC  800

seq1  CTTTACCCCCATATATTTTATCATTGTATCACTACTGATCAGCAGCATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCCCCATATATTTTATCATTGTATCACTACTGATCAGCAGCATAG  850

seq1  CTTTCCCATCGATATCCTATAGAAAGAAGAATTTTGAAATGATTAACAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCATCGATATCCTATAGAAAGAAGAATTTTGAAATGATTAACAGT  900

seq1  AATGTTAGACGAGGAGTTGTTTTTTTGTATATAAGAACATGTAAAACTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAGACGAGGAGTTGTTTTTTTGTATATAAGAACATGTAAAACTAA  950

seq1  ATCATCTCCTTACGGTTATAAAATCTTTGAATATGTATCTCCTATATAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTCCTTACGGTTATAAAATCTTTGAATATGTATCTCCTATATAAA  1000

seq1  ACTATCAAAAATATCATTGAATAGCAATA-GATAATTTTGGAGCTTGTAT  1049
      |||||  |||||||||||||||||||||| ||||||||||||||||||||
seq2  ACTATTCAAAATATCATTGAATAGCAATAGGATAATTTTGGAGCTTGTAT  1050

seq1  ATTCATATAAATTTTAAGAAAAAGCAAATTTAACT---------------  1084
      | |||||| ||||||| |||||||| |||||||||               
seq2  A-TCATAT-AATTTTAGGAAAAAGC-AATTTAACTATTAATACTTAACAT  1097

seq1  ----TAATTTAAA  1093
          |||||||||
seq2  GATATAATTTAAA  1110