BAC Information

Click to search

BAC

Clone NameB6Ng01-073B15
ChromosomeX (Build37)
Map Location 101,168,255 - 101,319,666
singlet/doubletdoublet
Overlap geneRnf12, C77370
Upstream geneEG331480, EG668382, LOC668387, EG245545, LOC100042610, EG621205, Nap1l2, LOC668217, 4930519F16Rik, LOC100042615, Cdx4, LOC671052, Chic1, Tsx, Tsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2, EG621381, EG668426, LOC668430
Downstream geneVcp-ps, EG621542, Uprt, Zdhhc15, Magee2, LOC622098, LOC676331, 5530601H04Rik, 2610029G23Rik, Magee1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073B15.bB6Ng01-073B15.g
ACCDH890330DH890331
length1,1581,141
definitionDH890330|Mus musculus domesticus DNA, BAC clone: B6Ng01-073B15, 5' end.DH890331|Mus musculus domesticus DNA, BAC clone: B6Ng01-073B15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,318,504 - 101,319,666)(101,168,255 - 101,169,391)
sequence
gaattctttacttcattgactttatttttcatttactttacatttctata
atgatcttcatttcttgcttcctaccaagtttggtttagcttgttcttat
ttttctgaccttgaggtatatcataaaattatgaattctctttgaatttt
tagagtaggcactcatacttacaaacttccctatagcaactgcctttgca
gtatcacaaatgtcctgataaagtatagttttattttaatttgattctat
gaatattaaaatttcctccctcattttttccataaaaccaattgatcaaa
tgggcaaaggataaaagtggaaagtggtggatgtaaattaagagagagaa
taaaaaaattgactattagaagatgaaggagaaaaataaaaacacaaaat
aataaaagaaaattattacaaatacaaaaataaatgtatatatatgtgta
tatacatacacatgcacgtatgtaggtattatatgccattcagcaatact
agggggaaagggcacagtagcacactattataaaaccagaactgtaaagg
tagagctaagaggatcaccagtttgaggaccagtgtggcctacaacgtga
tttctaagccaacttgagctaccttgttaaaatgttccaaaaaatgtttt
agaaattaaaatgttatgtcctctgggtagtcatgtgaacaatagtggct
gttcattatgtctaccagttggcacttatatgtccatatgtctagaacaa
taagcttattggagaaagcaaatgcaggtgatggtcacctttccttttct
gttgtcagccaatctgacaatgtgagtgttttagtactgcatatattgtt
ttagtagtggaatacctttgttccatgcttgctagtatgaggtggtataa
accaaagttccctcagtcagaatttcctccaaatatattagttgaacata
ctttccacacccccagccagagcctgcctgaccctgagatcacatagata
atggggcaacaactatacaaggtagagtcatagagcaatctcatgttttt
tcttactcacactgtagtttcccggagtacaggtctacatatgggctttc
ccagccactgagcattttatctgtccccttcaccggcttatctaatggaa
catctccc
gaattcaaaagaccctctgcactaaaatgtcattaagtacaggtatgtat
gtctgggaaaatggtaatattgagctgtatgttccaatgacacaaaattc
taccgccttcttggtaaggtcacaaaacagaataaaagaccagctcaatt
tctttttacgtccatgacgtactgttctatagtccccctacatattcgaa
aaactctccatatatttctgcagcatatttcttattccaacttcaagcaa
actagcaaggccttgctaaatagaacagtgtttgctaaggcagtggcttc
catcagaagtttgttgctttagttattttgggaacaaggagaataattaa
ataattaaatctgacttaattcattccccacttcttccctaactctccat
ccatctgctttaattttgcattggctaagagatttcagcactgagaaggg
acatccacctgtggggaaagccataatgatgagttacatctcaggttcca
gaacctgaggtacctgcttaaacattttgaaagaaaaggaaattctgaat
gcaagcagtggtctcaatatcaggtaaaggagtcctgtcttggctgtagc
atgtgaaaaatggtaataaagccaagtcacaattgtttgagtggtggaaa
ataacattttaaaggtaaagatgtgttgcagacgttaggaaaccatgatc
ttcaactaactaaaagccagaattttcaccactgtagtataaaataatca
gcaaaaaatgttgatagcctttaagacatatatgatgaaaggaattatga
tatatttccagttaaactagtaacagggaaaaagagcatagtgctcagtg
gcagagtacttgtctcacgtgtgatgccctggtttgctactgtgagctga
gggaggagacaaggcctacacatccctgggatccttccacataaccagag
agggtctttattctatcacctcattcctcaagcttaatattcataacata
gatcatacacttgtatatattaggtagcttcagacattttaaaacagtac
ttccttcgaagaataccaataccagttcactgtagaaaaaattcccacct
actccttaagcaccttagcttctttaaccctacctctgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_101318504_101319666
seq2: B6Ng01-073B15.b_45_1202 (reverse)

seq1  GGGAGATGTTCCCCTTTTAGATAAG-CAGTGCAGTGGTCAGATAAAAATG  49
      ||||||||||||    ||||||||| | ||| || || ||||| ||||||
seq2  GGGAGATGTTCC---ATTAGATAAGCCGGTGAAGGGGACAGAT-AAAATG  46

seq1  CTCAGTGGCTGAGAAAGCACATATGTAGACTGGTACT-CGGGAAACTACA  98
      ||||||||||| |||||| |||||||||||  ||||| ||||||||||||
seq2  CTCAGTGGCTGGGAAAGCCCATATGTAGACCTGTACTCCGGGAAACTACA  96

seq1  GTTGTGAGTAAG-AAAAACATGAGATTTGCTCTATGACTCTACCTTGTAT  147
      | |||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  G-TGTGAGTAAGAAAAAACATGAGA-TTGCTCTATGACTCTACCTTGTAT  144

seq1  AGTTTGTTGCCCCATTATCTATGTGGATCTCAGGGTCAGGCAGGCTCTGG  197
      || ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AG-TTGTTGCCCCATTATCTATGT-GATCTCAGGGTCAGGCAGGCTCTGG  192

seq1  CTGGGGGTGTGGAAAGTATGTTCAACTAATATATTTGGAGGAAATTCTGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGTGTGGAAAGTATGTTCAACTAATATATTTGGAGGAAATTCTGA  242

seq1  CTGAGGGAACTTTGGTTTATACCACCTCATACTAGCAAGCATGGAACAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGAACTTTGGTTTATACCACCTCATACTAGCAAGCATGGAACAAA  292

seq1  GGTATTCCACTACTAAAACAATATATGCAGTACTAAAACACTCACATTGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCCACTACTAAAACAATATATGCAGTACTAAAACACTCACATTGT  342

seq1  CAGATTGGCTGACAACAGAAAAGGAAAGGTGACCATCACCTGCATTTGCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGGCTGACAACAGAAAAGGAAAGGTGACCATCACCTGCATTTGCT  392

seq1  TTCTCCAATAAGCTTATTGTTCTAGACATATGGACATATAAGTGCCAACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAATAAGCTTATTGTTCTAGACATATGGACATATAAGTGCCAACT  442

seq1  GGTAGACATAATGAACAGCCACTATTGTTCACATGACTACCCAGAGGACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACATAATGAACAGCCACTATTGTTCACATGACTACCCAGAGGACA  492

seq1  TAACATTTTAATTTCTAAAACATTTTTTGGAACATTTTAACAAGGTAGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTTAATTTCTAAAACATTTTTTGGAACATTTTAACAAGGTAGCT  542

seq1  CAAGTTGGCTTAGAAATCACGTTGTAGGCCACACTGGTCCTCAAACTGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGGCTTAGAAATCACGTTGTAGGCCACACTGGTCCTCAAACTGGT  592

seq1  GATCCTCTTAGCTCTACCTTTACAGTTCTGGTTTTATAATAGTGTGCTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCTTAGCTCTACCTTTACAGTTCTGGTTTTATAATAGTGTGCTAC  642

seq1  TGTGCCCTTTCCCCCTAGTATTGCTGAATGGCATATAATACCTACATACG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCTTTCCCCCTAGTATTGCTGAATGGCATATAATACCTACATACG  692

seq1  TGCATGTGTATGTATATACACATATATATACATTTATTTTTGTATTTGTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGTATGTATATACACATATATATACATTTATTTTTGTATTTGTA  742

seq1  ATAATTTTCTTTTATTATTTTGTGTTTTTATTTTTCTCCTTCATCTTCTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTCTTTTATTATTTTGTGTTTTTATTTTTCTCCTTCATCTTCTA  792

seq1  ATAGTCAATTTTTTTATTCTCTCTCTTAATTTACATCCACCACTTTCCAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCAATTTTTTTATTCTCTCTCTTAATTTACATCCACCACTTTCCAC  842

seq1  TTTTATCCTTTGCCCATTTGATCAATTGGTTTTATGGAAAAAATGAGGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCCTTTGCCCATTTGATCAATTGGTTTTATGGAAAAAATGAGGGA  892

seq1  GGAAATTTTAATATTCATAGAATCAAATTAAAATAAAACTATACTTTATC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTTAATATTCATAGAATCAAATTAAAATAAAACTATACTTTATC  942

seq1  AGGACATTTGTGATACTGCAAAGGCAGTTGCTATAGGGAAGTTTGTAAGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATTTGTGATACTGCAAAGGCAGTTGCTATAGGGAAGTTTGTAAGT  992

seq1  ATGAGTGCCTACTCTAAAAATTCAAAGAGAATTCATAATTTTATGATATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGCCTACTCTAAAAATTCAAAGAGAATTCATAATTTTATGATATA  1042

seq1  CCTCAAGGTCAGAAAAATAAGAACAAGCTAAACCAAACTTGGTAGGAAGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGGTCAGAAAAATAAGAACAAGCTAAACCAAACTTGGTAGGAAGC  1092

seq1  AAGAAATGAAGATCATTATAGAAATGTAAAGTAAATGAAAAATAAAGTCA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGAAGATCATTATAGAAATGTAAAGTAAATGAAAAATAAAGTCA  1142

seq1  ATGAAGTAAAGAATTC  1163
      ||||||||||||||||
seq2  ATGAAGTAAAGAATTC  1158

seq1: chrX_101168255_101169391
seq2: B6Ng01-073B15.g_70_1210

seq1  GAATTCAAAAGACCCTCTGCACTAAAATGTCATTAAGTACAGGTATGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGACCCTCTGCACTAAAATGTCATTAAGTACAGGTATGTAT  50

seq1  GTCTGGGAAAATGGTAATATTGAGCTGTATGTTCCAATGACACAAAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGAAAATGGTAATATTGAGCTGTATGTTCCAATGACACAAAATTC  100

seq1  TACCGCCTTCTTGGTAAGGTCACAAAACAGAATAAAAGACCAGCTCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGCCTTCTTGGTAAGGTCACAAAACAGAATAAAAGACCAGCTCAATT  150

seq1  TCTTTTTACGTCCATGACGTACTGTTCTATAGTCCCCCTACATATTCGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTACGTCCATGACGTACTGTTCTATAGTCCCCCTACATATTCGAA  200

seq1  AAACTCTCCATATATTTCTGCAGCATATTTCTTATTCCAACTTCAAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTCCATATATTTCTGCAGCATATTTCTTATTCCAACTTCAAGCAA  250

seq1  ACTAGCAAGGCCTTGCTAAATAGAACAGTGTTTGCTAAGGCAGTGGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCAAGGCCTTGCTAAATAGAACAGTGTTTGCTAAGGCAGTGGCTTC  300

seq1  CATCAGAAGTTTGTTGCTTTAGTTATTTTGGGAACAAGGAGAATAATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAAGTTTGTTGCTTTAGTTATTTTGGGAACAAGGAGAATAATTAA  350

seq1  ATAATTAAATCTGACTTAATTCATTCCCCACTTCTTCCCTAACTCTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAAATCTGACTTAATTCATTCCCCACTTCTTCCCTAACTCTCCAT  400

seq1  CCATCTGCTTTAATTTTGCATTGGCTAAGAGATTTCAGCACTGAGAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGCTTTAATTTTGCATTGGCTAAGAGATTTCAGCACTGAGAAGGG  450

seq1  ACATCCACCTGTGGGGAAAGCCATAATGATGAGTTACATCTCAGGTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCACCTGTGGGGAAAGCCATAATGATGAGTTACATCTCAGGTTCCA  500

seq1  GAACCTGAGGTACCTGCTTAAACATTTTGAAAGAAAAGGAAATTCTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGAGGTACCTGCTTAAACATTTTGAAAGAAAAGGAAATTCTGAAT  550

seq1  GCAAGCAGTGGTCTCAATATCAGGTAAAGGAGTCCTGTCTTGGCTGTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAGTGGTCTCAATATCAGGTAAAGGAGTCCTGTCTTGGCTGTAGC  600

seq1  ATGTGAAAAATGGTAATAAAGCCAAGTCACAATTGTTTGAGTGGTGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAAAATGGTAATAAAGCCAAGTCACAATTGTTTGAGTGGTGGAAA  650

seq1  ATAACATTTTAAAGGTAAAGATGTGTTGCAGACGTTAGGAAACCATGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTTTAAAGGTAAAGATGTGTTGCAGACGTTAGGAAACCATGATC  700

seq1  TTCAACTAACTAAAAGCCAGAATTTTCACCACTGTAGTATAAAATAATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTAACTAAAAGCCAGAATTTTCACCACTGTAGTATAAAATAATCA  750

seq1  GCAAAAAATGTTGATAGCCTTTAAGACATATATGATGAAAGGAATTATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAAATGTTGATAGCCTTTAAGACATATATGATGAAAGGAATTATGA  800

seq1  TATATTTCCAGTTAAACTAGTAACAGGGAAAAAGAGCATAGTGCTCAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCCAGTTAAACTAGTAACAGGGAAAAAGAGCATAGTGCTCAGTG  850

seq1  GCAGAGTACTTGTCTCACGTGTGATGCCCTGGTTTGCTACTGTGAGCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTACTTGTCTCACGTGTGATGCCCTGGTTTGCTACTGTGAGCTGA  900

seq1  GGGAGGAGACAAGGCCTACACATCCTTGGAATCCTTCCACATAACCAGAG  950
      ||||||||||||||||||||||||| ||| ||||||||||||||||||||
seq2  GGGAGGAGACAAGGCCTACACATCCCTGGGATCCTTCCACATAACCAGAG  950

seq1  AGGGTCTTTATTCTATCACCTCATT-CTCAAGGCTTAATATTCATAACAT  999
      ||||||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  AGGGTCTTTATTCTATCACCTCATTCCTCAA-GCTTAATATTCATAACAT  999

seq1  AGATCATACACTTGTATATA-TAAGTAGCTTCAGACATTTTAAAACAGTA  1048
      |||||||||||||||||||| || ||||||||||||||||||||||||||
seq2  AGATCATACACTTGTATATATTAGGTAGCTTCAGACATTTTAAAACAGTA  1049

seq1  CTTTCCTCAAAAGATTACCAATACAAGTCAACTGTAGAAAAAAAT-CCAA  1097
      | |||||   |||| ||||||||| |||  ||||||||||||| | ||| 
seq2  C-TTCCTTCGAAGAATACCAATACCAGTTCACTGTAGAAAAAATTCCCAC  1098

seq1  CTACTCTTAAAGCA-CTTAGCTCTTTTA--CCTACCTCTGATT  1137
      |||||| | ||||| |||||||  ||||  |||||||||||||
seq2  CTACTCCTTAAGCACCTTAGCTTCTTTAACCCTACCTCTGATT  1141