BAC Information

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BAC

Clone NameB6Ng01-074B16
ChromosomeX (Build37)
Map Location 64,262,556 - 64,424,983
singlet/doubletdoublet
Overlap geneEG666828
Upstream geneSlitrk2, LOC666824, LOC627734
Downstream geneGm1140, LOC666842, LOC619873, 4933436I01Rik, LOC100040194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074B16.bB6Ng01-074B16.g
ACCDH891044DH891045
length1,215640
definitionDH891044|Mus musculus domesticus DNA, BAC clone: B6Ng01-074B16, 5' end.DH891045|Mus musculus domesticus DNA, BAC clone: B6Ng01-074B16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,262,556 - 64,263,658)(64,424,340 - 64,424,983)
sequence
gaattctcagggtactggttggttcatattgttgtaccttctattggggt
gcaaaccccttcatctccttcagaacccagatgtccctcaacagaggaat
ggatacagaaaatgtggtacatttacacaatggagtactacacagctatt
aaaaataatgaactcattaaatttttaggcaaatgaactgaactaaaata
tatcatcctgagtgaggtaacccaatcacaaaagaacacacatggtatgc
attcactgataagttgatattagcccaaaagcttggaatacccaagattc
aattcacaggccacaacaagctcaagtaggaagactaaagtgtggatact
ttggtccttagaagggggaataaaaaacccatgggaagagatacagagac
aaagtatggagcagagactgaaagaaaaactatccagagactgccccacc
tggagatccatcccatatacagtcatcaaacccagactctagtgtggatt
ccaacaagtgcttgctgacagaagcctgatatagctgtctcctgagaggc
tctaccagagcctgacaagtacagaggtggatgctggcagccaactattg
aaataattctcttttttagtatagatgatagatttatagatagataatag
attaaaatagatatagaagataggtaatagttttctaggaagtattaagg
ttgtattcctaaggtattcttgtgattttactcattttgtttctagcttt
cttagatgtatgaatttccttttgatatgttgttaggagaagcctaccag
atatcataaaactcagtagaaatgggcacaattatatccagatattgcag
gatatctagctagaacagtgctaaacaggactctcttctcaagttgattc
tcctttgtattgcccatgggctttaaattggactactttagttacaggac
aagatactggcagctaaagaaataatcatatcaaccatactctcaactta
aagagcatggagagtccctcctatttatcccatctgtcccaccaaggcat
ccttaaattctccttagtactcaaatttttcagttggagaaagtagtcaa
ggaaaacatgttcattccatccaaagattcttcaaccgaatctcaatctt
tattaatgcttgaataataatctaactcctgcaacattacaatataactt
catttccaacttact
gaattcattatattctcctcctttgagtgttgaaataagggcccaatgtc
tatactcaaggtaaattgtcttcaattctgtattctttaactcttactct
ctaaaatataaaaccaagaaagaggaaatctaagattatattatttaaat
catctatttctctttctctgtctatccatctgtctatctctttccctccc
cctttctctctctctctccttctctctctctctctctctctctctctctc
tctctctctcacacacacacacacacacacacacacaaacatatacacat
gcgcgaaacacatgcaaacagacatgatatattctttctatttaaaattg
atcacacagacaaaaataaaaaataccaataaatcaatacctttcccaaa
cataacaaatatagggagagaagctctataggaaaatattcttaaatata
ttaataaattcacattgcatatcgatagaggtgaaataagcccacacaga
cctcaatgagtgtgtgtgtgtgtgtgtgtgtatatgcgtgcacacacaca
ttttcatgacgtgtgtatatatgtgtatatgtgtacattcactatttaaa
gacatatagaaaacttaagttgcgtgtgttccacaaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_64262556_64263658
seq2: B6Ng01-074B16.b_143_1251

seq1  AGAAAATGTGGTACATTTACACAATGGAGTACTACACAGCTATTAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGTGGTACATTTACACAATGGAGTACTACACAGCTATTAAAAAT  50

seq1  AATGAACTCATTAAATTTTTAGGCAAATGAACTGAACTAAAATATATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACTCATTAAATTTTTAGGCAAATGAACTGAACTAAAATATATCAT  100

seq1  CCTGAGTGAGGTAACCCAATCACAAAAGAACACACATGGTATGCATTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTGAGGTAACCCAATCACAAAAGAACACACATGGTATGCATTCAC  150

seq1  TGATAAGTTGATATTAGCCCAAAAGCTTGGAATACCCAAGATTCAATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGTTGATATTAGCCCAAAAGCTTGGAATACCCAAGATTCAATTCA  200

seq1  CAGGCCACAACAAGCTCAAGTAGGAAGACTAAAGTGTGGATACTTTGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCACAACAAGCTCAAGTAGGAAGACTAAAGTGTGGATACTTTGGTC  250

seq1  CTTAGAAGGGGGAATAAAAAACCCATGGGAAGAGATACAGAGACAAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAGGGGGAATAAAAAACCCATGGGAAGAGATACAGAGACAAAGTA  300

seq1  TGGAGCAGAGACTGAAAGAAAAACTATCCAGAGACTGCCCCACCTGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAGAGACTGAAAGAAAAACTATCCAGAGACTGCCCCACCTGGAGA  350

seq1  TCCATCCCATATACAGTCATCAAACCCAGACTCTAGTGTGGATTCCAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCCATATACAGTCATCAAACCCAGACTCTAGTGTGGATTCCAACA  400

seq1  AGTGCTTGCTGACAGAAGCCTGATATAGCTGTCTCCTGAGAGGCTCTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGCTGACAGAAGCCTGATATAGCTGTCTCCTGAGAGGCTCTACC  450

seq1  AGAGCCTGACAAGTACAGAGGTGGATGCTGGCAGCCAACTATTGAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTGACAAGTACAGAGGTGGATGCTGGCAGCCAACTATTGAAATAA  500

seq1  TTCTCTTTTTTAGTATAGATGATAGATTTATAGATAGATAATAGATTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTTTTAGTATAGATGATAGATTTATAGATAGATAATAGATTAAA  550

seq1  ATAGATATAGAAGATAGGTAATAGTTTTCTAGGAAGTATTAAGGTTGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATATAGAAGATAGGTAATAGTTTTCTAGGAAGTATTAAGGTTGTAT  600

seq1  TCCTAAGGTATTCTTGTGATTTTACTCATTTTGTTTCTAGCTTTCTTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGGTATTCTTGTGATTTTACTCATTTTGTTTCTAGCTTTCTTAGA  650

seq1  TGTATGAATTTCCTTTTGATATGTTGTTAGGAGAAGCCTACCAGATATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAATTTCCTTTTGATATGTTGTTAGGAGAAGCCTACCAGATATCA  700

seq1  TAAAACTCAGTAGAAATGGGCACAATTATATCCAGATATTGCAGGATATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTCAGTAGAAATGGGCACAATTATATCCAGATATTGCAGGATATC  750

seq1  TAGCTAGAACAGTGCTAAACAGGACTCTCTTCTCAAGTTGATTCTCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGAACAGTGCTAAACAGGACTCTCTTCTCAAGTTGATTCTCCTTT  800

seq1  GTATTGCCCATGGGCTTTAAATTGGACTACTTTAGTTACAGGACAAAGAT  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTATTGCCCATGGGCTTTAAATTGGACTACTTTAGTTACAGGAC-AAGAT  849

seq1  ACTGGCAGCTAAAGAAATAATCATATCAACCATACTCTCAACTTAAAAGA  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACTGGCAGCTAAAGAAATAATCATATCAACCATACTCTCAACTT-AAAGA  898

seq1  GCAT-GAGAGTCCCTCCTATTTATCCCATCTGT-CCACCAAGGCATCCT-  947
      |||| |||||||||||||||||||||||||||| ||||||||||||||| 
seq2  GCATGGAGAGTCCCTCCTATTTATCCCATCTGTCCCACCAAGGCATCCTT  948

seq1  -AAATCT-CATAGTACTCAA--TTTTCAG-TGGAG--AGTAGTCAAGGAA  990
       || ||| | ||||||||||  ||||||| |||||  |||||||||||||
seq2  AAATTCTCCTTAGTACTCAAATTTTTCAGTTGGAGAAAGTAGTCAAGGAA  998

seq1  ACATTGTTCA-TCCATCAAAATAT--CTCAAC--GATCTCAAATCTATAA  1035
      |   |||||| |||||| ||| ||   |||||   ||||| ||||| | |
seq2  AACATGTTCATTCCATCCAAAGATTCTTCAACCGAATCTC-AATCT-TTA  1046

seq1  TTAAATTGCTTGAATAAT-ATCATACTCCCCTGCAACATTTACATATAAC  1084
      ||||  |||||||||||| |||  |||  |||||||||||   |||||||
seq2  TTAA--TGCTTGAATAATAATCTAACT--CCTGCAACATTACAATATAAC  1092

seq1  ATTTCATTTCCAACTTACT  1103
        |||||||||||||||||
seq2  --TTCATTTCCAACTTACT  1109

seq1: chrX_64424340_64424983
seq2: B6Ng01-074B16.g_66_705 (reverse)

seq1  ATATTTGTGGAGACATA-GAAACTTTATGTATTTCTATATGTCCATACAT  49
      ||||||||||| ||| | | ||| ||| || ||||||||||||  || ||
seq2  ATATTTGTGGA-ACACACGCAAC-TTAAGT-TTTCTATATGTCTTTAAAT  47

seq1  AGTGAAATAAATCATGTTTTCATCAAATCTTACTATCTTTAAAATTGCTG  99
      ||||||   |  ||| |   |||  |  |  ||  || | |||||   ||
seq2  AGTGAATGTACACATATACACATATATACACAC-GTCATGAAAATGTGTG  96

seq1  TCTGTAAGGCTATAAAACCTCTTCATATTTTGTGGATTTTTGAGCTCACT  149
      | || | |  |||| |  | |  || |         |  ||||| ||  |
seq2  TGTGCACGCATATACACACAC-ACACACACACACACTCATTGAGGTCTGT  145

seq1  GTGAGCTTATTTCACCTCTATCATTATGCAATGTGAATTTACTAATTTCT  199
      ||| ||||||||||||||||||  ||||||||||||||||| |||| | |
seq2  GTGGGCTTATTTCACCTCTATCGATATGCAATGTGAATTTATTAATATAT  195

seq1  TAAAGAAATATTTCCTATTGAGCTGCAAACCCTATAATTGTTCTGTTTGG  249
      | |||||   |||||||| ||||| |   ||||||| ||||| |||||||
seq2  TTAAGAATATTTTCCTATAGAGCTTCTCTCCCTATATTTGTTATGTTTGG  245

seq1  GAATGGTTTTGATTCTTTGGAATATTTGACTTTTTGCCT-ACTTATCAAT  298
      ||| ||| ||||||  |||| || ||| | |||||| ||   | ||||||
seq2  GAAAGGTATTGATTTATTGGTATTTTTTA-TTTTTGTCTGTGTGATCAAT  294

seq1  TTTTGTTTGAATTCATAGATCATGACTTTTTTCATACTATGTGTGTGTGT  348
      |||   | |||   ||| |||||| || ||| |||    |  | |  |||
seq2  TTTAAATAGAAAGAATATATCATGTCTGTTTGCATGTGTTTCGCGCATGT  344

seq1  GTATGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGA  398
      |||| ||| |||||||||||||| | | | | | | ||||||||||||||
seq2  GTATATGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGA  394

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAAGGAGAGAGAGAGAGAAAGGGGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAAGGAGAGAGAGAGAGAAAGGGGGA  444

seq1  GGGAAAGAGATAGACAGATGGATAGACAGAGAAAGAGAAATAGATGATTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGAGATAGACAGATGGATAGACAGAGAAAGAGAAATAGATGATTT  494

seq1  AAATAATATAATCTTAGATTTCCTCTTTCTTGGTTTTATATTTTAGAGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATAATCTTAGATTTCCTCTTTCTTGGTTTTATATTTTAGAGAG  544

seq1  TAAGAGTTAAAGAATACAGAATTGAAGACAATTTACCTTGAGTATAGACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTTAAAGAATACAGAATTGAAGACAATTTACCTTGAGTATAGACA  594

seq1  TTGGGCCCTTATTTCAACACTCAAAGGAGGAGAATATAATGAATTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCCCTTATTTCAACACTCAAAGGAGGAGAATATAATGAATTC  640