BAC Information

Click to search

BAC

Clone NameB6Ng01-074N11
ChromosomeX (Build37)
Map Location 72,998,496 - 73,129,373
singlet/doubletdoublet
Overlap genePls3
Upstream geneOlfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437, EG667446, LOC669291, Gab3, Dkc1, Mpp1, EG547412, 4930428E23Rik, EG667190, F8, LOC572559, LOC667218, Fundc2, Mtcp1, Brcc3, LOC667496, Vbp1, Rab39b, EG635243
Downstream geneLOC635275, EG635295, LOC667537, LOC385472, LOC100041147, EG238829, Magea7, 4930428D18Rik, EG544974, 4930468A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074N11.bB6Ng01-074N11.g
ACCDH891578DH891579
length7301,199
definitionDH891578|Mus musculus domesticus DNA, BAC clone: B6Ng01-074N11, 5' end.DH891579|Mus musculus domesticus DNA, BAC clone: B6Ng01-074N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,998,496 - 73,004,101)(73,128,169 - 73,129,373)
sequence
gaattccagaaccatttctatacttgagagaaatccctggctatggcaga
gaaggtcaggtctcttttgaccctttatcctgcctcatctccctggatgt
tcaggaagggaaggtagtagggagaagtcctaagtaggctgctgcctgct
tggatgtcaatcatcacagcaagcaggctttcaaggacccaggaggatgg
taccctggcagccttggctgtttaggacacccttggaaatacagcatagc
ctggctgtttctaagctgtttctcctcagtttcaccagaggccaggacac
tggctaggctcctggcccacatggggctcacggtgaggttgcttgcacag
gatcatggtggagcctccaggaccactgaagggttctagggatgagggtg
ttttcccgaggggcctgggaccctgctctgaacccgcagcacagctcaaa
gagagagtctgttctaaaagagaggaagggaaacccaagatgacccgaaa
cataggaagggaatgaggaggaattgaggcctgcagggagggagctaact
ggatgaaagaaatctatctggccacaaaagctacctgagatactgagaca
gagcagagaagcatgataacctgcatctctctctctctctgtctctctct
ctctctctctctctctctctctgtctctcacacacacacactcacacaca
cacacacaaaaacacagtctgtctctctct
gaattccatgcctggaaattatgttgagaggagagaaccaagtcctggta
aactaaattccataggtagtcattgtgcctatgaactggtatgcacactt
gctctcctaagtaaacatacagaaataatcaatcacacgtatttttctag
cagatttttggatgggttgttttggtggccataggggttagttggtgaag
agaaggcaattttcattctactgatgtaatttggcttcttaatgcaaccc
agaacctggactgagttaacaatgtaataataataacaacagcaacaact
attattattgttgttattattaactattattattattattattattatta
aataaaacaattctaagcatagtggcacatgtctttaatcccagcatgca
agaggcaaagacagagagatctctgagttctaggtcaatcagggctatgt
agtcagaccctgtttttgttttattttgttaagaaaaaaaggggggagtt
taaaacataaagaaataaagatgaaagcaaaatgcagcatgtgactttat
tacatagaccttgtgagataattattaatgctatatcaaaaacatcacaa
aaattgtctagatagataaaagcaaaatagtctgtaacttggtgttaaat
gactataagacaagagagcctttttgtttctaccttaaggatacccaata
tagtccccacccaacactggaaatctgtaggagattgattcttgaactcc
aatgtgtgctaaagttccttatattggaatgcatttgcacctaacctatg
tgaatccaatactatactttagtacatgactttgaatggctattacggtg
ttaataccggcgaaatttagaaatttagaaatttctatttaggaaaacaa
tgttgacaagggaaaaagtgtttatgtgatcagtaaaagatagaataaaa
aatatttttttggtcacagttgactggatttggcacataggaggaggccc
actacccatggtaatttatcttttcataggataagtagatcgatcttttt
acccatggatgtttatcagtggtcctttattggggcaatccttagctttg
gttttgcagataggcggaccaggagccctaaggaaaggctcaattcccag
aacacctcaaacctttgtttctcaaagaggactttttcttttggcttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_72998496_73004101
seq2: B6Ng01-074N11.b_47_776

seq1  GAATTCCAGAACCATTTCTATACTTGAGAGAAATCCCTGGCTATGGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACCATTTCTATACTTGAGAGAAATCCCTGGCTATGGCAGA  50

seq1  GAAGGTCAGGTCTCTTTTGACCCTTTATCCTGCCTCATCTCCCTGGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCAGGTCTCTTTTGACCCTTTATCCTGCCTCATCTCCCTGGATGT  100

seq1  TCAGGAAGGGAAGGTAGTAGGGAGAAGTCCTAAGTAGGCTGCTGCCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGGGAAGGTAGTAGGGAGAAGTCCTAAGTAGGCTGCTGCCTGCT  150

seq1  TGGATGTCAATCATCACAGCAAGCAGGCTTTCAAGGACCCAGGAGGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTCAATCATCACAGCAAGCAGGCTTTCAAGGACCCAGGAGGATGG  200

seq1  TACCCTGGCAGCCTTGGCTGTTTAGGACACCCTTGGAAATACAGCATAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGGCAGCCTTGGCTGTTTAGGACACCCTTGGAAATACAGCATAGC  250

seq1  CTGGCTGTTTCTAAGCTGTTTCTCCTCAGTTTCACCAGAGGCCAGGACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTTTCTAAGCTGTTTCTCCTCAGTTTCACCAGAGGCCAGGACAC  300

seq1  TGGCTAGGCTCCTGGCCCACATGGGGCTCACGGTGAGGTTGCTTGCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGGCTCCTGGCCCACATGGGGCTCACGGTGAGGTTGCTTGCACAG  350

seq1  GATCATGGTGGAGCCTCCAGGACCACTGAAGGGTTCTAGGGATGAGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGGTGGAGCCTCCAGGACCACTGAAGGGTTCTAGGGATGAGGGTG  400

seq1  TTTTCCCGAGGGGCCTGGGACCCTGCTCTGAACCCGCAGCACAGCTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCGAGGGGCCTGGGACCCTGCTCTGAACCCGCAGCACAGCTCAAA  450

seq1  GAGAGAGTCTGTTCTAAAAGAGAGGAAGGGAAACCCAAGATGACCCGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGTCTGTTCTAAAAGAGAGGAAGGGAAACCCAAGATGACCCGAAA  500

seq1  CATAGGAAGGGAATGAGGAGGAATTGAGGCCTGCAGGGAGGGAGCTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGAAGGGAATGAGGAGGAATTGAGGCCTGCAGGGAGGGAGCTAACT  550

seq1  GGATGAAAGAAATCTATCTGGCCACAAAAGCTACCTGAGATACTGAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAAGAAATCTATCTGGCCACAAAAGCTACCTGAGATACTGAGACA  600

seq1  GAGCAGAGAAGCATGATAACCTGCATCTCTCTCTCTCTCTGTCTCTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAGAAGCATGATAACCTGCATCTCTCTCTCTCTCTGTCTCTCTCT  650

seq1  CTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTGTCTCTTACACA  700
      ||||||||||||||||||||||||||||| | | | |   |||  |||||
seq2  CTCTCTCTCTCTCTCTCTCTCTGTCTCTCACACACACACACTCACACACA  700

seq1  CACAAACATATACAGAGCATGTCTCTCTCTCTATGTATCACAGGGTGGGG  750
      |||| ||| | ||| ||  |||||||||||                    
seq2  CACACACAAAAACACAGTCTGTCTCTCTCT--------------------  730

seq1  GTGTGGGGGGGTGTTGGATGGGTGGGCATGACTGAAAGCAGCTGACAGGA  800
                                                        
seq2  --------------------------------------------------  730

seq1  ATCATCAAACAAAAGCAAGGGGAACCTGGATCTGTCTGGTGAACAGTGAC  850
                                                        
seq2  --------------------------------------------------  730

seq1  TGGCAGGACAAGTTGCCCACAAGAACCCAGATGCAGCCTTGGGTACACAT  900
                                                        
seq2  --------------------------------------------------  730

seq1  TGCTGAGTCCAGAGATCCCATGAGCCCTTGCAAACCTAACATGTCCGCCT  950
                                                        
seq2  --------------------------------------------------  730

seq1  GAACTGTGCTCAGGACCTGGAAGGCTGTGCTTCCCGAGTCAGGCTAGACA  1000
                                                        
seq2  --------------------------------------------------  730

seq1  AACCTTGTGTTGCCAGCCCTGTCCTCTAGTGAGCTGGATACTGCTCGATG  1050
                                                        
seq2  --------------------------------------------------  730

seq1  GCTCACAGGTCTCTCCTGGGCCAAGAAGGTCTCAGGGAGCCCCCAGTCCC  1100
                                                        
seq2  --------------------------------------------------  730

seq1  TCCTTGGCTGCCAGGAAAAGAGCGGGTCGGCCACCATGTTAAGAGAGGCG  1150
                                                        
seq2  --------------------------------------------------  730

seq1  CAGGGATGTGCAGGCGGAAACCTCAAACCAATTCCGCTTGATGGCAGTAG  1200
                                                        
seq2  --------------------------------------------------  730

seq1  AGCACCAAGAAAGGCAACTGCCAGGCTGCTGGGCGCTCTCCCTCTGCCCT  1250
                                                        
seq2  --------------------------------------------------  730

seq1  TCCAGAGGCAAAAAACGCCAACCTACAACCACCAGCCACAAACATGGAGC  1300
                                                        
seq2  --------------------------------------------------  730

seq1  CTGAGCACTATGGCTTCCACTGGGCAGAATGTCTCTCTGTGCCCTGCTAG  1350
                                                        
seq2  --------------------------------------------------  730

seq1  TGCCTAAGAAATGTTTTCTTATGTGCTTGGGAGGTGTGAGTGAGTGTGTG  1400
                                                        
seq2  --------------------------------------------------  730

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGTGGA  1450
                                                        
seq2  --------------------------------------------------  730

seq1  GGTTTGGGAGTAGTGATGATGAGGGTGCATAAGTGTTCCAGGCTGGGTGG  1500
                                                        
seq2  --------------------------------------------------  730

seq1  AGTGCAGTGTTGAGACAGAATGGTCACTGATCACAGACACTCCTCAACTG  1550
                                                        
seq2  --------------------------------------------------  730

seq1  TAGGGCAGCTGCCAGCCACTGGAGGGCCTGGTCAGAGAACTTGAGAAAGG  1600
                                                        
seq2  --------------------------------------------------  730

seq1  CAAGCCCTAAGGGGCTGGAGCAGGTCTTTGGAACTGACCATCAGGGAGCC  1650
                                                        
seq2  --------------------------------------------------  730

seq1  CTATCTAAACCCTGTGTAAATCTGGGCCATAGGGGTGGAGCCTCTGAAAT  1700
                                                        
seq2  --------------------------------------------------  730

seq1  AAGTGAGTGCCTGGACTGTATGACAAGGGGTTGGTCCTGCCCATGCAGTG  1750
                                                        
seq2  --------------------------------------------------  730

seq1  CCTGGCCAGGCCAAGGGCCTGGGGCTGGCCCAGAGATCCAGTGGCTGCCT  1800
                                                        
seq2  --------------------------------------------------  730

seq1  GCCTGACCCTGCCCATCTGGGTGTCCTCTAAAGCTGATAGTCAGTTACTT  1850
                                                        
seq2  --------------------------------------------------  730

seq1  CTCTTCCTGGGGGGCAGACTCTGTGGTCCCTGGGCACACTCTCTCAACTT  1900
                                                        
seq2  --------------------------------------------------  730

seq1  TCCAGGTCCAGGCACACAGCCAAGAAGGCCCTCCCTGCATGACCACGGGC  1950
                                                        
seq2  --------------------------------------------------  730

seq1  TGCCTGGTAGGGCAACAGGGAAGTGGTGTCAGAGAGCACTGGGCACAGGC  2000
                                                        
seq2  --------------------------------------------------  730

seq1  AAGGTTGATCAGAGCGCACACCTGGTGCGGGTGGGGCACCAGGCCCAGCA  2050
                                                        
seq2  --------------------------------------------------  730

seq1  CTGGCTTCCCACCTGGCAGCAGGAAGTGCTGCAGTGGACCCAAGGCCATG  2100
                                                        
seq2  --------------------------------------------------  730

seq1  GGTGGGCAGTTGTATGTGCCTGTGAGGCCTTCAGTGTCCCTGGCCTGAAC  2150
                                                        
seq2  --------------------------------------------------  730

seq1  CCCAAGTCCAATGGGAGATGAAAAGAAGGGACCCCGGAAGAAAAGCTTAG  2200
                                                        
seq2  --------------------------------------------------  730

seq1  TCTTCTTACCCAGGCACACAGGTTGGTTTCTCAGGCAGTCCTCTCCATAT  2250
                                                        
seq2  --------------------------------------------------  730

seq1  GAGTTCCGGTGAATGCTGCCCCAGAGAGTCATCCAGTCATCTGTCCAGGT  2300
                                                        
seq2  --------------------------------------------------  730

seq1  CAGAGGTCCTGAGGGGCGGGCCGCCCACTCCCACTATCTCGCCAGCAGGC  2350
                                                        
seq2  --------------------------------------------------  730

seq1  CGCCTAGCCATATCAACCTGACCTGAGAACAAGGACACATCAAGAGAAGG  2400
                                                        
seq2  --------------------------------------------------  730

seq1  AACAATTATTCCAGCCCAACCTGCAACTGTGGCTACCAGGCCCCCGATTC  2450
                                                        
seq2  --------------------------------------------------  730

seq1  TCAGCTCCAACTAAGTAAGCATGGCCAGGTAACCAGGCAACCAGGCAACC  2500
                                                        
seq2  --------------------------------------------------  730

seq1  ATTATGAGGTAAGTCCTGCTCCCTACAGTATCTCTCCTCTCCCTAAATTC  2550
                                                        
seq2  --------------------------------------------------  730

seq1  TCCACCCCACCTCCACTACACCCCAGCCCTTTACCAACCAGCAGACAGCA  2600
                                                        
seq2  --------------------------------------------------  730

seq1  CGGGAGAGGGAAGGGGGACACCACAATTCTCTCTCCTTCCTTCCTCCAAG  2650
                                                        
seq2  --------------------------------------------------  730

seq1  GTCCCCAAGTCATTTTCACACATGGATCCTTCTATCTGTGTCCTCCCACA  2700
                                                        
seq2  --------------------------------------------------  730

seq1  CAGCCACCTACCTACCTGTGCTGGAACTCGCCATGCATGCAACTCGAAGC  2750
                                                        
seq2  --------------------------------------------------  730

seq1  TCTCGAAAGACATTCAAGTGCACCGCAGGTGACGGGCACCTACACACAAA  2800
                                                        
seq2  --------------------------------------------------  730

seq1  GCACAATGACCAATGCCCACTTATCCCAACAGGATGCCTGCAACACATCT  2850
                                                        
seq2  --------------------------------------------------  730

seq1  ACTCCCCTGACTTCCTAGGTCACTTCACACCAAGGTCGTCTGAGGGGTCC  2900
                                                        
seq2  --------------------------------------------------  730

seq1  CACTGACAATTCTAAAGGCACATTCTAACTTTCTCTCCACATGCTCACTA  2950
                                                        
seq2  --------------------------------------------------  730

seq1  ACACAGGGTAATAACAACTGGCTTGCAACACACCCACCCACCTTCCTACC  3000
                                                        
seq2  --------------------------------------------------  730

seq1  TACCTACCTACCTACCTATTCTCTGCCTCTGGATCACCAATATGTACAGT  3050
                                                        
seq2  --------------------------------------------------  730

seq1  TCCAGGCACAGTTTCCAGGGCAGATGGGTCTCTTTGGTTCCACATGATGG  3100
                                                        
seq2  --------------------------------------------------  730

seq1  ATACCATGACCATGTGGGAAATGATTTCACGACCCACAGGCAAGCCTTCC  3150
                                                        
seq2  --------------------------------------------------  730

seq1  TTTCATGAGCACTGAGAATCTCCAGAGGTCCAGCCTCGCACTCCTGAGAT  3200
                                                        
seq2  --------------------------------------------------  730

seq1  CTTAGTTCACAGCTGGTGGAAGAAGACCCCTCTAACAGTCTCGAGGAGAC  3250
                                                        
seq2  --------------------------------------------------  730

seq1  AAGCCTGACATTGCCTCTCAATTCTCCCTCCCTACCAAATTGCAGGAGGG  3300
                                                        
seq2  --------------------------------------------------  730

seq1  ATCTGCTCTAATACAACCAAGAGAGTTCTGTCTGCACAGGCAGGCCTGCT  3350
                                                        
seq2  --------------------------------------------------  730

seq1  CTGAGTTCTCAGAGGTGCAAGGCCTGCAACCACAAGGAAGGACTGATCCA  3400
                                                        
seq2  --------------------------------------------------  730

seq1  GCCACCCTCCATATTAGTGTTACACAGTTGTCTCATCCACCTGAACAGAA  3450
                                                        
seq2  --------------------------------------------------  730

seq1  GTATAGGGGACAATACCCCTGCCTTAGCCCTAGGATCTTTATGCACCTCC  3500
                                                        
seq2  --------------------------------------------------  730

seq1  TGCACACCTGACCTATGGCCTGGGGATACATGAAACCTTAAGGTTTCCCC  3550
                                                        
seq2  --------------------------------------------------  730

seq1  TACAGCCAATCCTGTCCTTCTCACACAATACTGAGCTCAACACCATAAGA  3600
                                                        
seq2  --------------------------------------------------  730

seq1  ACTGCCAAACCCTGAACCAAGATGGACCTCCTTCAGGGACTTGAGTCTCC  3650
                                                        
seq2  --------------------------------------------------  730

seq1  TAGCTTTTTGACCATGGGACACACACATACACTGACACAAACAGAGAGGG  3700
                                                        
seq2  --------------------------------------------------  730

seq1  AGAGAGAGAGAGGTAGAGAGAGATGGTGAGAGACAGAGAGAGACAGAAGA  3750
                                                        
seq2  --------------------------------------------------  730

seq1  CAGAGACAGAGACAGAGACAGAGACAGAGACAGAGAGGCAGGGGGACAGA  3800
                                                        
seq2  --------------------------------------------------  730

seq1  TAGAAAGGACAGAGACAGACAGGCAGACAAAGAAAGAAACTCGGGTCTCC  3850
                                                        
seq2  --------------------------------------------------  730

seq1  CAGTCTTCTAAGATCCTAGACCACTGCATCTGTGAATTCCAGAACCATTT  3900
                                                        
seq2  --------------------------------------------------  730

seq1  CTATTCTTCCAGAAATCCCTGGCTACGGCAGAGAAGGTCAGGTTTCTTTT  3950
                                                        
seq2  --------------------------------------------------  730

seq1  GACCCTTTATCCTGCCTCATCTCCCTGGATGTTAAGGAAGGGAAGGTAGT  4000
                                                        
seq2  --------------------------------------------------  730

seq1  AGGGAGAAGTCCTAAGTAGGCTGCTGCCTGCTTGGATGTCAATCATCACA  4050
                                                        
seq2  --------------------------------------------------  730

seq1  GCAAGCAGGCTTTCAAGGACCCAGGAGGATGGTACCCTGGCAGCCTTGGC  4100
                                                        
seq2  --------------------------------------------------  730

seq1  TGTTTAGGACACCCTTGGAAATACAGCATAGCCTGGCTGTTTCTAAGCTG  4150
                                                        
seq2  --------------------------------------------------  730

seq1  TTTCTCCTCAGTTTCACCAGAGGCCAGGACACTGGCTAGGCTCCTGGCCC  4200
                                                        
seq2  --------------------------------------------------  730

seq1  ACATGGGGCTCACAGTGAGGTTGCTTGCACAGGATCATGGTGGAGCCTCC  4250
                                                        
seq2  --------------------------------------------------  730

seq1  AGGACCACTGAAGGGTTCTAGGGATGAGGGTGTTTTCCCGAGGGGCCTGG  4300
                                                        
seq2  --------------------------------------------------  730

seq1  GACCCTGCTCTGAACCCGCAGCACAGCTCAAAGAGAGAGTCTGTTCTAAA  4350
                                                        
seq2  --------------------------------------------------  730

seq1  AGAGAGGAAGGGAAACCCAAGATGACCCGAAACATAGGAAGGGAATGAGG  4400
                                                        
seq2  --------------------------------------------------  730

seq1  AGGAATTGAGGCCTGCAGGGAGGGAGCTAACTGGATGAAAGAAATCTATC  4450
                                                        
seq2  --------------------------------------------------  730

seq1  TGGCCACAAAAGCTACCTGAGATACTGAGACAGAGCAGAGAAGCATGATA  4500
                                                        
seq2  --------------------------------------------------  730

seq1  ACCTGCATCTCTCTCTCTCTCTGTCTCTCTGTCTCTCTCTCTCTCTCTCT  4550
                                                        
seq2  --------------------------------------------------  730

seq1  CTCTCTCTCTCACACACACACACACACACACACACACACAGAAACACACA  4600
                                                        
seq2  --------------------------------------------------  730

seq1  CAGTTTGTCTCTCTCTGTGTATCACGGGGTGGGGGTGGGGGGGGGTTGGA  4650
                                                        
seq2  --------------------------------------------------  730

seq1  TGGGTGGGCATGACTGAAAGCAGCTGCCAGGAATCATCAAACAAAAGCAA  4700
                                                        
seq2  --------------------------------------------------  730

seq1  GGGGAACCTGGATCTGTCTGGTGAACAGTGACTGGCAGGACAAGTTGCCC  4750
                                                        
seq2  --------------------------------------------------  730

seq1  ACAAGAACACAGATGCAGCCTTGGGTGCACATTGCAGAGGCCAGAGATCC  4800
                                                        
seq2  --------------------------------------------------  730

seq1  CATGAGCCCTTGCAAACCTAACATGTCCGCCTGAACTGTGCTCAGGACCT  4850
                                                        
seq2  --------------------------------------------------  730

seq1  GGAAGGCTGTGCTTCCTGAATCAGGCTAGCCAAACCTTTTGTCGCCAGCT  4900
                                                        
seq2  --------------------------------------------------  730

seq1  CTGTCCCCTAGTGAGGTCGATCCTGCTCACTCGCAGGTCTCTCCTGGGCC  4950
                                                        
seq2  --------------------------------------------------  730

seq1  AAGAAGGTCTCAGGGAGCCCCCAGTCCCTCCTTGGCTGCCAGGAAAAGAG  5000
                                                        
seq2  --------------------------------------------------  730

seq1  CGGGTCGGCCGCCATGTTCAGAGAGGCGCAGGGATGTGCAGGCGGAAACC  5050
                                                        
seq2  --------------------------------------------------  730

seq1  TCAAACCAATTCCGCTTGATGGCAGTAAAACACCGCGAATGGCAACTGCC  5100
                                                        
seq2  --------------------------------------------------  730

seq1  AGGCTGCTGGGCGCTCTCCCTCTGCCCTTCTAGAGGCAAAAAACGCCAAC  5150
                                                        
seq2  --------------------------------------------------  730

seq1  CTGCAACCACCAGCCACAAACATGGAGCCTGAGCACTAGGGCTTCCACTG  5200
                                                        
seq2  --------------------------------------------------  730

seq1  GGCAGAATGTCTCTCTGTGTCCTGCTAGTGCCTAAGAAATGTTTTCTTAT  5250
                                                        
seq2  --------------------------------------------------  730

seq1  GTGCTTGGCTGGTGTGAGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  5300
                                                        
seq2  --------------------------------------------------  730

seq1  TGTGTGTGTGAGTGTGTGGAGGTTTGGGAGTAGTGATGATGAGGGTGCAT  5350
                                                        
seq2  --------------------------------------------------  730

seq1  AAGTGTTCCAGGCTGGGTGGAGTGCAGTGTTGAGACAGAATGGTCACTGA  5400
                                                        
seq2  --------------------------------------------------  730

seq1  TCACAGACACTCCTCAACTGTAGGGCAGCTGCCAGCCACTGGAGGGCCTG  5450
                                                        
seq2  --------------------------------------------------  730

seq1  GTCACAAGAGCTACCTGAGATACTGAAACAGAGCAGAGAAGCATGATAAC  5500
                                                        
seq2  --------------------------------------------------  730

seq1  CTGCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  5550
                                                        
seq2  --------------------------------------------------  730

seq1  CTCACACACACACACACACACACACACACACACACACACAGAGTTTGTCT  5600
                                                        
seq2  --------------------------------------------------  730

seq1  CTCTCT  5606
            
seq2  ------  730

seq1: chrX_73128169_73129373
seq2: B6Ng01-074N11.g_70_1268 (reverse)

seq1  AGAAGCAAAAAGAAAAAAGTCCTCTTGTGAAGAAAACAAAAGGTGTTTTG  50
      |||||| ||||| ||||||||||||| |||   |||||||    | ||||
seq2  AGAAGCCAAAAG-AAAAAGTCCTCTT-TGA--GAAACAAA----GGTTTG  42

seq1  AGGTGTTTCTGGG-ATTGGGCTTTCTTTTAGGGCTCCTGGGTCG-CTATC  98
      ||||| ||||||| |||| || ||   |||||||||||||  || |||||
seq2  AGGTG-TTCTGGGAATTGAGCCTTTCCTTAGGGCTCCTGGTCCGCCTATC  91

seq1  TGCAAAACAAAAGCTAAGGATTTGCCCAAATAAAGGACCACTGAT-AACA  147
      |||||||| ||||||||||| |||||| ||||||||||||||||| ||||
seq2  TGCAAAACCAAAGCTAAGGA-TTGCCCCAATAAAGGACCACTGATAAACA  140

seq1  TCAATGGGTAAAAAGATCGATCTACTTAATCTATTGAAAAGATAAATTAC  197
      || |||||||||||||||||||||||||  ||| ||||||||||||||||
seq2  TCCATGGGTAAAAAGATCGATCTACTTATCCTA-TGAAAAGATAAATTAC  189

seq1  CATGGGTAGTGGGCCTCCTCCTATGTGCCAAATTCAGTCAACTGTGACC-  246
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  CATGGGTAGTGGGCCTCCTCCTATGTGCCAAATCCAGTCAACTGTGACCA  239

seq1  AAAAAATATTTTTTATTCTATCTTTTACTGATCACATAGACACTTTTTTC  296
      |||||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  AAAAAATATTTTTTATTCTATCTTTTACTGATCACATAAACACTTTTTCC  289

seq1  CTTGTCAACATTGTTTT-CTAAATAGAAA-TTCTAAATTTCTAAATTTCG  344
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  CTTGTCAACATTGTTTTCCTAAATAGAAATTTCTAAATTTCTAAATTTCG  339

seq1  CCGGTATTAACACCGTAATAGCCATTCAAAGTCATGTACTTAAAGTATAG  394
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCGGTATTAACACCGTAATAGCCATTCAAAGTCATGTAC-TAAAGTATAG  388

seq1  TATTGGATTCACATAGGTTAGGTGCAAATGCATTCCAATATAAGGAACTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGATTCACATAGGTTAGGTGCAAATGCATTCCAATATAAGGAACTT  438

seq1  TAGCACACATTGGAGTTCAAGAATCAATCTCCTACAGATTTCCAGTGTTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACACATTGGAGTTCAAGAATCAATCTCCTACAGATTTCCAGTGTTG  488

seq1  GGTGGGGACTATATTGGGTATCCTTAAGGTAGAAACAAAAAGGCTCTCTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGACTATATTGGGTATCCTTAAGGTAGAAACAAAAAGGCTCTCTT  538

seq1  GTCTTATAGTCATTTAACACCAAGTTACAGACTATTTTGCTTTTATCTAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATAGTCATTTAACACCAAGTTACAGACTATTTTGCTTTTATCTAT  588

seq1  CTAGACAATTTTTGTGATGTTTTTGATATAGCATTAATAATTATCTCACA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACAATTTTTGTGATGTTTTTGATATAGCATTAATAATTATCTCACA  638

seq1  AGGTCTATGTAATAAAGTCACATGCTGCATTTTGCTTTCATCTTTATTTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTATGTAATAAAGTCACATGCTGCATTTTGCTTTCATCTTTATTTC  688

seq1  TTTATGTTTTAAACTCCCCCCTTTTTTTCTTAACAAAATAAAACAAAAAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTTTAAACTCCCCCCTTTTTTTCTTAACAAAATAAAACAAAAAC  738

seq1  AGGGTCTGACTACATAGCCCTGATTGACCTAGAACTCAGAGATCTCTCTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTGACTACATAGCCCTGATTGACCTAGAACTCAGAGATCTCTCTG  788

seq1  TCTTTGCCTCTTGCATGCTGGGATTAAAGACATGTGCCACTATGCTTAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCCTCTTGCATGCTGGGATTAAAGACATGTGCCACTATGCTTAGA  838

seq1  ATTGTTTTATTTAATAATAATAATAATAATAATAATAGTTAATAATAACA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTATTTAATAATAATAATAATAATAATAATAGTTAATAATAACA  888

seq1  ACAATAATAATAGTTGTTGCTGTTGTTATTATTATTACATTGTTAACTCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAATAATAGTTGTTGCTGTTGTTATTATTATTACATTGTTAACTCA  938

seq1  GTCCAGGTTCTGGGTTGCATTAAGAAGCCAAATTACATCAGTAGAATGAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGTTCTGGGTTGCATTAAGAAGCCAAATTACATCAGTAGAATGAA  988

seq1  AATTGCCTTCTCTTCACCAACTAACCCCTATGGCCACCAAAACAACCCAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCTTCTCTTCACCAACTAACCCCTATGGCCACCAAAACAACCCAT  1038

seq1  CCAAAAATCTGCTAGAAAAATACGTGTGATTGATTATTTCTGTATGTTTA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATCTGCTAGAAAAATACGTGTGATTGATTATTTCTGTATGTTTA  1088

seq1  CTTAGGAGAGCAAGTGTGCATACCAGTTCATAGGCACAATGACTACCTAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGAGAGCAAGTGTGCATACCAGTTCATAGGCACAATGACTACCTAT  1138

seq1  GGAATTTAGTTTACCAGGACTTGGTTCTCTCCTCTCAACATAATTTCCAG  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTAGTTTACCAGGACTTGGTTCTCTCCTCTCAACATAATTTCCAG  1188

seq1  GCATGGAATTC  1205
      |||||||||||
seq2  GCATGGAATTC  1199