BAC Information

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BAC

Clone NameB6Ng01-075B20
ChromosomeX (Build37)
Map Location 165,177,054 - 165,222,654
singlet/doubletdoublet
Overlap genenone
Upstream geneFrmpd4, EG667822, EG637566, Msl31
Downstream geneArhgap6, Amelx, Hccs, LOC100040950, BC022960, Mid1, 4933400A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075B20.bB6Ng01-075B20.g
ACCDH891765DH891766
length3941,057
definitionDH891765|Mus musculus domesticus DNA, BAC clone: B6Ng01-075B20, 5' end.DH891766|Mus musculus domesticus DNA, BAC clone: B6Ng01-075B20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,177,054 - 165,177,447)(165,221,610 - 165,222,654)
sequence
gaattctctatttccattatctgttcattttaatactctcttacatctct
ggtaattttttattagatattttctttatttacatttcaaatggtatcct
gaaagttccctatacccttcctctgcactgctcccctaccgacccactcc
ttcttggccctggcatttccctgtactcgggcatatacagattgtaatac
ctaggggcctcttttgccaatgatggccaactaggccatcttctgctaca
tatgcagctagagacatgagctctgggggtactggttagctcatattgtt
gttacacctatagggttgcagaccccttcagctctttgggtgctttctct
agctcctccattgggggcctgtgatccaggggaacaccagggcc
gaattcctcaggtatttctcacatttctctgctgtgttgtgtgacacaga
ttgcagacataccgatgggctcctcccccaactccctttaaaggccagag
aatgcaaataaggtgctccagagactagaataggcaaggtgtgagtcaaa
gctaaactcaagggatcccctccttttaaatagggatgacttcagaaagt
gatgtcatgtaaaaacaatgctcccatcaataaccataaatcaatctttc
agcccagaaaatttctccccattcagaatttgagtacatagatcccatct
gtggaattatcctcaggcatcagtgggaaggaaggacttctgttagagca
aaactaaaacaagcaataacaatattgacagccacatattaaactgttga
tagttcactagaacactggatgtctatcccacttggttgggcatcatcaa
gtttgagttctaaatgaaggggagaggtgtgggaaataaagacaaagtag
gaaagtgacagaccaactagctaaccttgtataaaattatttagtttttc
agaggttcagttcttcctttgatgtatacagctgatacgtataaaataaa
aaattagcaaaaaaaaacaagaaagaaaattagcatgtattaaagaaata
ggatgtgtgctgtgacttgtctcaatttctctacgtgtacatattatgat
agtattaaatttctaatagttatcagactatatgccaagtgcataggtga
tttatactatttactcctcataactccatgaagtacttcttattatcatc
cttgttcaaagaaggaaactgagtcagacaactttcctaagtgaagtaaa
aaaaaatgtatagttggggatatgcttcatttaagctgagatagaggatg
gaaccagtgaaagaaccagattttaaggaggatgcttttctatacaaact
gtgtgataaatagaaaatccataatatctttccacattaaggatcgaggg
gtgttgagctaggagagtgtctatgatattggatgggaggagactagaaa
tggttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_165177054_165177447
seq2: B6Ng01-075B20.b_43_436

seq1  GAATTCTCTATTTCCATTATCTGTTCATTTTAATACTCTCTTACATCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATTTCCATTATCTGTTCATTTTAATACTCTCTTACATCTCT  50

seq1  GGTAATTTTTTATTAGATATTTTCTTTATTTACATTTCAAATGGTATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTTTTTATTAGATATTTTCTTTATTTACATTTCAAATGGTATCCT  100

seq1  GAAAGTTCCCTATACCCTTCCTCTGCACTGCTCCCCTACCGACCCACTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTCCCTATACCCTTCCTCTGCACTGCTCCCCTACCGACCCACTCC  150

seq1  TTCTTGGCCCTGGCATTTCCCTGTACTCGGGCATATACAGATTGTAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGCCCTGGCATTTCCCTGTACTCGGGCATATACAGATTGTAATAC  200

seq1  CTAGGGGCCTCTTTTGCCAATGATGGCCAACTAGGCCATCTTCTGCTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGGCCTCTTTTGCCAATGATGGCCAACTAGGCCATCTTCTGCTACA  250

seq1  TATGCAGCTAGAGACATGAGCTCTGGGGGTACTGGTTAGCTCATATTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGCTAGAGACATGAGCTCTGGGGGTACTGGTTAGCTCATATTGTT  300

seq1  GTTACACCTATAGGGTTGCAGACCCCTTCAGCTCTTTGGGTGCTTTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACCTATAGGGTTGCAGACCCCTTCAGCTCTTTGGGTGCTTTCTCT  350

seq1  AGCTCCTCCATTGGGGGCCTGTGATCCAGGGGAACACCAGGGCC  394
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTCCATTGGGGGCCTGTGATCCAGGGGAACACCAGGGCC  394

seq1: chrX_165221610_165222654
seq2: B6Ng01-075B20.g_66_1115 (reverse)

seq1  TTTCTTAGTCTC--TCCATCCATATTCATAGACACTCTTCTAGCTC-ACA  47
      |||| |||||||   |||||||   ||||||||||||| ||||||| |||
seq2  TTTC-TAGTCTCCTCCCATCCAATATCATAGACACTCTCCTAGCTCAACA  49

seq1  -CTCTCGATCCTTAATGTGGAAAGATTATTATGGATTTTCTATTTATCAC  96
       | |||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCCCTCGATCCTTAATGTGGAAAGA-TATTATGGATTTTCTATTTATCAC  98

seq1  ACAGTTTGTATAG-AAAGCAT-CTTCTTAAAATCTGGTTCTTTCACTGGT  144
      ||||||||||||| ||||||| || |||||||||||||||||||||||||
seq2  ACAGTTTGTATAGAAAAGCATCCTCCTTAAAATCTGGTTCTTTCACTGGT  148

seq1  TCCATCCTCTATCTCAGCTTAAATGAAGCATAT-CCCAACTATACATTTT  193
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCATCCTCTATCTCAGCTTAAATGAAGCATATCCCCAACTATACATTTT  198

seq1  TTTTTACTTCACTTAGGAAAGTTGTCTGACTCAGTTTCCTTCTTTGAACA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTTCACTTAGGAAAGTTGTCTGACTCAGTTTCCTTCTTTGAACA  248

seq1  AGGATGATAATAAGAAGTACTTCATGGAGTTATGAGGAGTAAATAGTATA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGATAATAAGAAGTACTTCATGGAGTTATGAGGAGTAAATAGTATA  298

seq1  AATCACCTATGCACTTGGCATATAGTCTGATAACTATTAGAAATTTAATA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCTATGCACTTGGCATATAGTCTGATAACTATTAGAAATTTAATA  348

seq1  CTATCATAATATGTACACGTAGAGAAATTGAGACAAGTCACAGCACACAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATAATATGTACACGTAGAGAAATTGAGACAAGTCACAGCACACAT  398

seq1  CCTATTTCTTTAATACATGCTAATTTTCTTTCTTGTTTTTTTTTGCTAAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTCTTTAATACATGCTAATTTTCTTTCTTGTTTTTTTTTGCTAAT  448

seq1  TTTTTATTTTATACGTATCAGCTGTATACATCAAAGGAAGAACTGAACCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTATACGTATCAGCTGTATACATCAAAGGAAGAACTGAACCT  498

seq1  CTGAAAAACTAAATAATTTTATACAAGGTTAGCTAGTTGGTCTGTCACTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAACTAAATAATTTTATACAAGGTTAGCTAGTTGGTCTGTCACTT  548

seq1  TCCTACTTTGTCTTTATTTCCCACACCTCTCCCCTTCATTTAGAACTCAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTTTGTCTTTATTTCCCACACCTCTCCCCTTCATTTAGAACTCAA  598

seq1  ACTTGATGATGCCCAACCAAGTGGGATAGACATCCAGTGTTCTAGTGAAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATGATGCCCAACCAAGTGGGATAGACATCCAGTGTTCTAGTGAAC  648

seq1  TATCAACAGTTTAATATGTGGCTGTCAATATTGTTATTGCTTGTTTTAGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACAGTTTAATATGTGGCTGTCAATATTGTTATTGCTTGTTTTAGT  698

seq1  TTTGCTCTAACAGAAGTCCTTCCTTCCCACTGATGCCTGAGGATAATTCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTAACAGAAGTCCTTCCTTCCCACTGATGCCTGAGGATAATTCC  748

seq1  ACAGATGGGATCTATGTACTCAAATTCTGAATGGGGAGAAATTTTCTGGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGGGATCTATGTACTCAAATTCTGAATGGGGAGAAATTTTCTGGG  798

seq1  CTGAAAGATTGATTTATGGTTATTGATGGGAGCATTGTTTTTACATGACA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGATTGATTTATGGTTATTGATGGGAGCATTGTTTTTACATGACA  848

seq1  TCACTTTCTGAAGTCATCCCTATTTAAAAGGAGGGGATCCCTTGAGTTTA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTCTGAAGTCATCCCTATTTAAAAGGAGGGGATCCCTTGAGTTTA  898

seq1  GCTTTGACTCACACCTTGCCTATTCTAGTCTCTGGAGCACCTTATTTGCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGACTCACACCTTGCCTATTCTAGTCTCTGGAGCACCTTATTTGCA  948

seq1  TTCTCTGGCCTTTAAAGGGAGTTGGGGGAGGAGCCCATCGGTATGTCTGC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGCCTTTAAAGGGAGTTGGGGGAGGAGCCCATCGGTATGTCTGC  998

seq1  AATCTGTGTCACACAACACAGCAGAGAAATGTGAGAAATACCTGAGGAAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTGTCACACAACACAGCAGAGAAATGTGAGAAATACCTGAGGAAT  1048

seq1  TC  1045
      ||
seq2  TC  1050