BAC Information

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BAC

Clone NameB6Ng01-076K01
ChromosomeX (Build37)
Map Location 144,766,818 - 144,895,682
singlet/doubletdoublet
Overlap geneLOC100039545, LOC666837, LOC100039553
Upstream geneIl13ra2, V1rb10, Lrch2, LOC100039462, LOC666789, LOC434863, EG623995, EG624023, LOC666184, LOC100039511, LOC666812, LOC100039519, LOC434864, EG624096
Downstream geneLOC100034729, LOC666861, EG666864, LOC434866, EG666868, EG624260, LOC434865, EG624310, Ott, LOC666888, LOC100039598, LOC100039890, LOC100039612, EG666923, EG624378, LOC100039934
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076K01.bB6Ng01-076K01.g
ACCDH892841DH892842
length1,0741,018
definitionDH892841|Mus musculus domesticus DNA, BAC clone: B6Ng01-076K01, 5' end.DH892842|Mus musculus domesticus DNA, BAC clone: B6Ng01-076K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,894,604 - 144,895,682)(144,766,818 - 144,767,840)
sequence
ggaattccaagtttgtcagcttcaaggattttctgggatgttggaacact
ggtgaaggcttagctatgtcagaactcaatccttaaaggcacttatgata
aaatagtactaaaagagagcacatggatccatacaccagactaactccgg
gatagggtatgagtatacgggctatgagaatgccaaggttccaggaggtt
gagtttgcttgaaactctttgcctcatgagtgcttccagtcctctcagcc
tgccaaacagacttcactggagtgtgcatagcagtccccagagtatcatt
tcagtggtcccctgtcgccagagacacatccttcctctgtaggaaccatg
ccttcttgtaagttggccacaataaaatgcttcatcctaaccctcccctg
ccaccccacggcccaggaatttcatttttcaaatctgcaagacaagatct
agaaatcaactgtctttggaagatactgagttttcttacctgtctaaagc
tgagttcaccaagaactgagaaaggctgcactcccaaagatacgacaaac
atttcctctataacttacctgtctgaataatcaacccctttccactcttg
ctccctggttgtgattatccttttcctactcaccaagactgaatccactg
tctacagctatagaaactgtttaagcaacaaaatgtactgagcattctag
tattgtaagaatcgtaccttctctgtacttgtagttacccatatatattt
gtagaaacacaaactgtgtttgaatatatcttcaagctttattaattgta
tgttttgggtgaagttaaaagccaaaacaacacaaaagaaaacaccccct
tcctcgggtggtgtagagctcatgcacagctccgtgatatatcatttcac
tcagtgtgtgcacgtgatgctacatttcgttcccagtagtgccagaacag
caacaaccagcacagttcctcagtttcaatctatccttctgtattggaaa
tggtagtatcttaccacaaaggaatttctaaggctagattaacatgattt
taaaagtatttgagctttccaatt
gaattccacataaactgaagactgccactttgaaatgctgagtatagata
gaatggacaatcactcttgtatagcattcagtgagacaagcagacaacgt
tagagtgttgaaatactaagtcatttttcaaaacaaggcctatcttttaa
aaactgtttctaaaagatactgaattcactgctgaaaatatggaaaataa
attttctcaaaataatacacaggacacagacgtgacagtaggggaagaaa
tggccattttttcagacaaagattttcagcaaatcatcctctacttcatc
tggtaagtgaacactaagggttaacagaaatcaagagtctgagatgtaac
atagttcttttagagatgagtgtgtttgtttctttgaagacaaggtctta
caagttcaatagtacaaggtagtatattacttactatgtagcctaggttg
gtaaagaatttctgatgttcatcctgtctcaatcttccagtgatgaaact
aagagaaggtgttatatgttaggtatcataattacttttctttgtaaaaa
aacactatgatcaaggcagtgtacaaaaggaagagggtcagaaaccttga
tcatcatggggtgggcagtgtattgcagcaggaggaaggccccttcaact
atttcaggaaacattttattttttattttaatcattgggaattttgaatt
tataaggtacaaaaatagatagtttgtgattgtcattaattgtaaatatt
attctcattttgtcctcttataaatttttatcttaagctatagtataaaa
atagtttactaccctcaaaaactaatggtatgaaccagaaatctggagta
gagagataccctagtatttaaaagtgcttgctagtgttccagatgaccca
agttcagctctcaacacccacatcagtggtcctatacttaatgcagtttc
aagggctttaacccctcctctggttctgtaagcaccacacacatggggca
tattctccatatacacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_144894604_144895682
seq2: B6Ng01-076K01.b_45_1117 (reverse)

seq1  AATT-GAAAGCTCTAAATACTTTT-ATATCATGGTTTAATCTAGCCTTAG  48
      |||| |||||||| |||||||||| | ||||||  |||||||||||||||
seq2  AATTGGAAAGCTC-AAATACTTTTAAAATCATG--TTAATCTAGCCTTAG  47

seq1  -AATTCCTTTGTGGGTAGATACTACCATTTCCATATTACAGAAGGATAGA  97
       |||||||||||||  ||||||||||||||||  | ||||||||||||||
seq2  AAATTCCTTTGTGGTAAGATACTACCATTTCC--AATACAGAAGGATAGA  95

seq1  TTGAAACTGAGGAACTGGTGCTGGTTGTTGCTTGTTTCTGGCACTACTGG  147
      |||||||||||||||| |||||||||||||||   |||||||||||||||
seq2  TTGAAACTGAGGAACT-GTGCTGGTTGTTGCT--GTTCTGGCACTACTGG  142

seq1  GAACGAATTGTAGCATCACGTGCACACACTGAGTGAAATGATATATCACG  197
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGAAATGTAGCATCACGTGCACACACTGAGTGAAATGATATATCACG  192

seq1  GAGCTGTGCATGAGCTCTACACCACCCGAGGAAGGGGGTGTTTTCTTTTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGCATGAGCTCTACACCACCCGAGGAAGGGGGTGTTTTCTTTTG  242

seq1  TGTTGTTTTGGCTTTTAACTTCACCCAAAACATACAATTAATAAAAGCTT  297
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTTGTTTTGGCTTTTAACTTCACCCAAAACATACAATTAAT-AAAGCTT  291

seq1  GAAGATATATTCAAACACAGTTTGTGTTTCTACAAATATATATGGGTAAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATATATTCAAACACAGTTTGTGTTTCTACAAATATATATGGGTAAC  341

seq1  TACAAGTACAGAGAAGGTACGATTCTTACAATACTAGAATGCTCAGTACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTACAGAGAAGGTACGATTCTTACAATACTAGAATGCTCAGTACA  391

seq1  TTTTGTTGCTTAAACAGTTTCTATAGCTGTAGACAGTGGATTCAGTCTTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGCTTAAACAGTTTCTATAGCTGTAGACAGTGGATTCAGTCTTG  441

seq1  GTGAGTAGGAAAAGGATAATCACAACCAGGGAGCAAGAGTGGAAAGGGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTAGGAAAAGGATAATCACAACCAGGGAGCAAGAGTGGAAAGGGGT  491

seq1  TGATTATTCAGACAGGTAAGTTATAGAGGAAATGTTTGTCGTATCTTTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATTCAGACAGGTAAGTTATAGAGGAAATGTTTGTCGTATCTTTGG  541

seq1  GAGTGCAGCCTTTCTCAGTTCTTGGTGAACTCAGCTTTAGACAGGTAAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCAGCCTTTCTCAGTTCTTGGTGAACTCAGCTTTAGACAGGTAAGA  591

seq1  AAACTCAGTATCTTCCAAAGACAGTTGATTTCTAGATCTTGTCTTGCAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGTATCTTCCAAAGACAGTTGATTTCTAGATCTTGTCTTGCAGA  641

seq1  TTTGAAAAATGAAATTCCTGGGCCGTGGGGTGGCAGGGGAGGGTTAGGAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAAATGAAATTCCTGGGCCGTGGGGTGGCAGGGGAGGGTTAGGAT  691

seq1  GAAGCATTTTATTGTGGCCAACTTACAAGAAGGCATGGTTCCTACAGAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATTTTATTGTGGCCAACTTACAAGAAGGCATGGTTCCTACAGAGG  741

seq1  AAGGATGTGTCTCTGGCGACAGGGGACCACTGAAATGATACTCTGGGGAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTGTCTCTGGCGACAGGGGACCACTGAAATGATACTCTGGGGAC  791

seq1  TGCTATGCACACTCCAGTGAAGTCTGTTTGGCAGGCTGAGAGGACTGGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGCACACTCCAGTGAAGTCTGTTTGGCAGGCTGAGAGGACTGGAA  841

seq1  GCACTCATGAGGCAAAGAGTTTCAAGCAAACTCAACCTCCTGGAACCTTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCATGAGGCAAAGAGTTTCAAGCAAACTCAACCTCCTGGAACCTTG  891

seq1  GCATTCTCATAGCCCGTATACTCATACCCTATCCCGGAGTTAGTCTGGTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTCATAGCCCGTATACTCATACCCTATCCCGGAGTTAGTCTGGTG  941

seq1  TATGGATCCATGTGCTCTCTTTTAGTACTATTTTATCATAAGTGCCTTTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATCCATGTGCTCTCTTTTAGTACTATTTTATCATAAGTGCCTTTA  991

seq1  AGGATTGAGTTCTGACATAGCTAAGCCTTCACCAGTGTTCCAACATCCCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGAGTTCTGACATAGCTAAGCCTTCACCAGTGTTCCAACATCCCA  1041

seq1  GAAAATCCTTGAAGCTGACAAACTTGGAATTC  1079
      ||||||||||||||||||||||||||||||||
seq2  GAAAATCCTTGAAGCTGACAAACTTGGAATTC  1073

seq1: chrX_144766818_144767840
seq2: B6Ng01-076K01.g_68_1085

seq1  GAATTCCACATAAACTGAAGACTGCCACTTTGAAATGCTGAGTATAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATAAACTGAAGACTGCCACTTTGAAATGCTGAGTATAGATA  50

seq1  GAATGGACAATCACTCTTGTATAGCATTCAGTGAGACAAGCAGACAACGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGACAATCACTCTTGTATAGCATTCAGTGAGACAAGCAGACAACGT  100

seq1  TAGAGTGTTGAAATACTAAGTCATTTTTCAAAACAAGGCCTATCTTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGTTGAAATACTAAGTCATTTTTCAAAACAAGGCCTATCTTTTAA  150

seq1  AAACTGTTTCTAAAAGATACTGAATTCACTGCTGAAAATATGGAAAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTTTCTAAAAGATACTGAATTCACTGCTGAAAATATGGAAAATAA  200

seq1  ATTTTCTCAAAATAATACACAGGACACAGACGTGACAGTAGGGGAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCAAAATAATACACAGGACACAGACGTGACAGTAGGGGAAGAAA  250

seq1  TGGCCATTTTTTCAGACAAAGATTTTCAGCAAATCATCCTCTACTTCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATTTTTTCAGACAAAGATTTTCAGCAAATCATCCTCTACTTCATC  300

seq1  TGGTAAGTGAACACTAAGGGTTAACAGAAATCAAGAGTCTGAGATGTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGTGAACACTAAGGGTTAACAGAAATCAAGAGTCTGAGATGTAAC  350

seq1  ATAGTTCTTTTAGAGATGAGTGTGTTTGTTTCTTTGAAGACAAGGTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCTTTTAGAGATGAGTGTGTTTGTTTCTTTGAAGACAAGGTCTTA  400

seq1  CAAGTTCAATAGTACAAGGTAGTATATTACTTACTATGTAGCCTAGGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCAATAGTACAAGGTAGTATATTACTTACTATGTAGCCTAGGTTG  450

seq1  GTAAAGAATTTCTGATGTTCATCCTGTCTCAATCTTCCAGTGATGAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAATTTCTGATGTTCATCCTGTCTCAATCTTCCAGTGATGAAACT  500

seq1  AAGAGAAGGTGTTATATGTTAGGTATCATAATTACTTTTCTTTGTAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGGTGTTATATGTTAGGTATCATAATTACTTTTCTTTGTAAAAA  550

seq1  AACACTATGATCAAGGCAGTGTACAAAAGGAAGAGGGTCAGAAACCTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTATGATCAAGGCAGTGTACAAAAGGAAGAGGGTCAGAAACCTTGA  600

seq1  TCATCATGGGGTGGGCAGTGTATTGCAGCAGGAGGAAGGCCCCTTCAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATGGGGTGGGCAGTGTATTGCAGCAGGAGGAAGGCCCCTTCAACT  650

seq1  ATTTCAGGAAACATTTTATTTTTTATTTTAATCATTGGGAATTTTGAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGGAAACATTTTATTTTTTATTTTAATCATTGGGAATTTTGAATT  700

seq1  TATAAGGTACAAAAATAGATAGTTTGTGATTGTCATTAATTGTAAATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGTACAAAAATAGATAGTTTGTGATTGTCATTAATTGTAAATATT  750

seq1  ATTCTCATTTTGTCCTCTTATAAATTTTTATCTTAAGCTATAGTATAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCATTTTGTCCTCTTATAAATTTTTATCTTAAGCTATAGTATAAAA  800

seq1  ATAGTTTACTACCCTCAAAAACTAATGGTATGAACCAGAAATCTGGAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTACTACCCTCAAAAACTAATGGTATGAACCAGAAATCTGGAGTA  850

seq1  GAGAGATACCCTAGTATTTAAAAGTGCTTGCTAGTGTTCCAGATGACCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATACCCTAGTATTTAAAAGTGCTTGCTAGTGTTCCAGATGACCCA  900

seq1  AGTTCAGCTCTCAACACCCACATCAGTGGTCCTATAACTTAAATGCAGTT  950
      ||||||||||||||||||||||||||||||||||| |||| |||||||||
seq2  AGTTCAGCTCTCAACACCCACATCAGTGGTCCTAT-ACTT-AATGCAGTT  948

seq1  TCAAGGGCTTTAACCCCTCCTCTGGTTTCTGTAAGCACCACACACATGGG  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCAAGGGCTTTAACCCCTCCTCTGG-TTCTGTAAGCACCACACACATGGG  997

seq1  GCATAATCTCACATAAAACACAC  1023
      ||||| |||| ||| | ||||||
seq2  GCATATTCTC-CAT-ATACACAC  1018