BAC Information

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BAC

Clone NameB6Ng01-077G03
ChromosomeX (Build37)
Map Location 49,798,514 - 49,820,870
singlet/doubletdoublet
Overlap geneGpc3
Upstream geneHs6st2, Usp26, LOC100040479, LOC665888, 1700080O16Rik, LOC100040495, Gpc4
Downstream geneKis2, LOC100041925, LOC665929, 6330534C20Rik, LOC624936, LOC546298, LOC100040569, Phf6, Hprt1, C430049B03Rik, Plac1, 4632404H22Rik, 4930432H15Rik, LOC385527, Mospd1, LOC100040609, Etd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077G03.bB6Ng01-077G03.g
ACCDH893374DH893375
length9541,032
definitionDH893374|Mus musculus domesticus DNA, BAC clone: B6Ng01-077G03, 5' end.DH893375|Mus musculus domesticus DNA, BAC clone: B6Ng01-077G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,819,915 - 49,820,870)(49,798,514 - 49,799,552)
sequence
gaattccatccaaataagttatcacatttttcagcaaagcacttatttcc
acattttaaaattagtacaattaagtgatatataaacgagagcattgatg
agaatggtacgtgaagaccaggtgttcgctaagcttgagcgacatatgac
tttctagtccatcttgatggttggctcggtgaagctcttcaaaggagcag
tatttttatgactattctcgtacctcactcctatctcttctggaaatttg
gtcttcaacacttttaactgaaagagacaattgtaattcttttttttttc
ggtgatcttatccctttggcttagttcaaccagtaagcagagtgactctc
catagttgtctagttgcaaaagcagagaagacttctcatttgtccagttc
tctgtggcaccaatgtcgtaaaaatgagagcacacagaaaactctccaca
ctctgttcttgttccctacagcttagagaaccataagtgctgtattcgtg
cattaagtgccagaacattcagtcttgcaccacatggagtccatttaccc
tccttatactcaaatgcaccaaattgtggcattgctacatctaactaggt
attaagcacagtatagtcttttcacaagacatgcctcttaaaagattaag
ctactctacataaaataagtgctgtttgactttaaatggacaaaaatggc
cattcaacatgattctagccaatacttttgggcaatagagtttgaaatca
aaatataacatgattccccgggaagctgtacagtgatgatgataatggaa
atgataaggataacaacagccattaaaaaggtcctgctatgtgccctttt
acctaatgtggggcttttcactaactcctctcacaactccaagagttagt
actattgcttaatactactctgtctctctctctctctctctctctctctc
tctc
gaattcagcctcgatctcataagctgtgacaagccactaaatttttctaa
tcttaaaaaggtgggactggagagaatgttatttggaggttaggagttat
ttatagctttctaactattcaatagcacagttcatttctctttaacctta
agaaatatttttagtaatatttgattttttaaaaaactgtccctgccata
accatttccccttatttttagaagacttggggaaatctcattctaactgc
ctttctgccttagagtatttaatagaaaaaaattttatactctaactatt
taccttctctcagagatgggtagttactgatgccttggaaatatggtcct
cagctaattttgagtttaagttagttagcctcaaaataattgccaaagtt
acccacttgcttacacaaggctgtcccagcagactcagggcagctactga
cagaattctggtcccttaagaatgaattaggttcagttgttttctgtcta
gtagaaggtgaatgggcaacactaccacctggatcaatctctgcacaagc
tacctatgcaattgttaactcacaggcaacgaaagcaaagaaaggcaaag
aaagacctgaatacctcacttaaaaacttccaaaagcaaagctccaaatg
aattctggttttgtatgattatagacgaatcatactgagttgcagagaac
ttttccattgtggcttatcccaaatattaactttccttttctcatcgtct
caagatctgtgaaattgcctagcacttattgacttgttgaaaaagatttc
aaagacaatgcttttgccacagatggactagactgaagaagtggaaatct
gatgaaatatggctggtaggcagtgagggcactggagagaccagggaaag
agacaaagctatttctttctatagagatggatgggcacattatcacctgc
atcacacatcactactaaaccacattatgctatcctcagtgactgctgct
ctgggccagaaactaatattaaggtgtgagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_49819915_49820870
seq2: B6Ng01-077G03.b_47_1000 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAGAGTAGTATTAAGCA  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG-ACAGAGTAGTATTAAGCA  49

seq1  ATAGTACTAACTCTTGGAGTTGTTGAGAGGAGTTAGTGAAAAGCCCCACA  100
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATAGTACTAACTCTTGGAGTTG-TGAGAGGAGTTAGTGAAAAGCCCCACA  98

seq1  TTAGGTAAAAGGGCACATAGCAGGACCTTTTTAATGGCTGTTGTTATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTAAAAGGGCACATAGCAGGACCTTTTTAATGGCTGTTGTTATCCT  148

seq1  TATCATTTCCATTATCATCATCACTGTACAGCTTCCCGGGGAATCATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTTCCATTATCATCATCACTGTACAGCTTCCCGGGGAATCATGTT  198

seq1  ATATTTTGATTTCAAACTCTATTGCCCAAAAGTATTGGCTAGAATCATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGATTTCAAACTCTATTGCCCAAAAGTATTGGCTAGAATCATGT  248

seq1  TGAATGGCCATTTTTGTCCATTTAAAGTCAAACAGCACTTATTTTATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGCCATTTTTGTCCATTTAAAGTCAAACAGCACTTATTTTATGTA  298

seq1  GAGTAGCTTAATCTTTTAAGAGGCATGTCTTGTGAAAAGACTATACTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCTTAATCTTTTAAGAGGCATGTCTTGTGAAAAGACTATACTGTG  348

seq1  CTTAATACCTAGTTAGATGTAGCAATGCCACAATTTGGTGCATTTGAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATACCTAGTTAGATGTAGCAATGCCACAATTTGGTGCATTTGAGTA  398

seq1  TAAGGAGGGTAAATGGACTCCATGTGGTGCAAGACTGAATGTTCTGGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGGGTAAATGGACTCCATGTGGTGCAAGACTGAATGTTCTGGCAC  448

seq1  TTAATGCACGAATACAGCACTTATGGTTCTCTAAGCTGTAGGGAACAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCACGAATACAGCACTTATGGTTCTCTAAGCTGTAGGGAACAAGA  498

seq1  ACAGAGTGTGGAGAGTTTTCTGTGTGCTCTCATTTTTACGACATTGGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTGTGGAGAGTTTTCTGTGTGCTCTCATTTTTACGACATTGGTGC  548

seq1  CACAGAGAACTGGACAAATGAGAAGTCTTCTCTGCTTTTGCAACTAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAACTGGACAAATGAGAAGTCTTCTCTGCTTTTGCAACTAGACA  598

seq1  ACTATGGAGAGTCACTCTGCTTACTGGTTGAACTAAGCCAAAGGGATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGAGAGTCACTCTGCTTACTGGTTGAACTAAGCCAAAGGGATAAG  648

seq1  ATCACCGAAAAAAAAAAGAATTACAATTGTCTCTTTCAGTTAAAAGTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCGAAAAAAAAAAGAATTACAATTGTCTCTTTCAGTTAAAAGTGTT  698

seq1  GAAGACCAAATTTCCAGAAGAGATAGGAGTGAGGTACGAGAATAGTCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCAAATTTCCAGAAGAGATAGGAGTGAGGTACGAGAATAGTCATA  748

seq1  AAAATACTGCTCCTTTGAAGAGCTTCACCGAGCCAACCATCAAGATGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTGCTCCTTTGAAGAGCTTCACCGAGCCAACCATCAAGATGGAC  798

seq1  TAGAAAGTCATATGTCGCTCAAGCTTAGCGAACACCTGGTCTTCACGTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTCATATGTCGCTCAAGCTTAGCGAACACCTGGTCTTCACGTAC  848

seq1  CATTCTCATCAATGCTCTCGTTTATATATCACTTAATTGTACTAATTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCATCAATGCTCTCGTTTATATATCACTTAATTGTACTAATTTTA  898

seq1  AAATGTGGAAATAAGTGCTTTGCTGAAAAATGTGATAACTTATTTGGATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGAAATAAGTGCTTTGCTGAAAAATGTGATAACTTATTTGGATG  948

seq1  GAATTC  956
      ||||||
seq2  GAATTC  954

seq1: chrX_49798514_49799552
seq2: B6Ng01-077G03.g_67_1098

seq1  GAATTCAGCCTCGATCTCATAAGCTGTGACAAGCCACTAAATTTTTCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTCGATCTCATAAGCTGTGACAAGCCACTAAATTTTTCTAA  50

seq1  TCTTAAAAAGGTGGGACTGGAGAGAATGTTATTTGGAGGTTAGGAGTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAAAGGTGGGACTGGAGAGAATGTTATTTGGAGGTTAGGAGTTAT  100

seq1  TTATAGCTTTCTAACTATTCAATAGCACAGTTCATTTCTCTTTAACCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCTTTCTAACTATTCAATAGCACAGTTCATTTCTCTTTAACCTTA  150

seq1  AGAAATATTTTTAGTAATATTTGATTTTTTAAAAAACTGTCCCTGCCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATTTTTAGTAATATTTGATTTTTTAAAAAACTGTCCCTGCCATA  200

seq1  ACCATTTCCCCTTATTTTTAGAAGACTTGGGGAAATCTCATTCTAACTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCCCCTTATTTTTAGAAGACTTGGGGAAATCTCATTCTAACTGC  250

seq1  CTTTCTGCCTTAGAGTATTTAATAGAAAAAAATTTTATACTCTAACTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCCTTAGAGTATTTAATAGAAAAAAATTTTATACTCTAACTATT  300

seq1  TACCTTCTCTCAGAGATGGGTAGTTACTGATGCCTTGGAAATATGGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCTCTCAGAGATGGGTAGTTACTGATGCCTTGGAAATATGGTCCT  350

seq1  CAGCTAATTTTGAGTTTAAGTTAGTTAGCCTCAAAATAATTGCCAAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAATTTTGAGTTTAAGTTAGTTAGCCTCAAAATAATTGCCAAAGTT  400

seq1  ACCCACTTGCTTACACAAGGCTGTCCCAGCAGACTCAGGGCAGCTACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTTGCTTACACAAGGCTGTCCCAGCAGACTCAGGGCAGCTACTGA  450

seq1  CAGAATTCTGGTCCCTTAAGAATGAATTAGGTTCAGTTGTTTTCTGTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTCTGGTCCCTTAAGAATGAATTAGGTTCAGTTGTTTTCTGTCTA  500

seq1  GTAGAAGGTGAATGGGCAACACTACCACCTGGATCAATCTCTGCACAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGGTGAATGGGCAACACTACCACCTGGATCAATCTCTGCACAAGC  550

seq1  TACCTATGCAATTGTTAACTCACAGGCAACGAAAGCAAAGAAAGGCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATGCAATTGTTAACTCACAGGCAACGAAAGCAAAGAAAGGCAAAG  600

seq1  AAAGACCTGAATACCTCACTTAAAAACTTCCAAAAGCAAAGCTCCAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCTGAATACCTCACTTAAAAACTTCCAAAAGCAAAGCTCCAAATG  650

seq1  AATTCTGGTTTTGTATGATTATAGACGAATCATACTGAGTTGCAGAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGGTTTTGTATGATTATAGACGAATCATACTGAGTTGCAGAGAAC  700

seq1  TTTTCCATTGTGGCTTATCCCAAATATTAACTTTCCTTTTCTCATCGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATTGTGGCTTATCCCAAATATTAACTTTCCTTTTCTCATCGTCT  750

seq1  CAAGATCTGTGAAATTGCCTAGCACTTATTGACTTGTTGAAAAAGATTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCTGTGAAATTGCCTAGCACTTATTGACTTGTTGAAAAAGATTTC  800

seq1  AAAGACAATGCTTTTGCCACAGATGGACTAGACTGAAGAAGTGGAAATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAATGCTTTTGCCACAGATGGACTAGACTGAAGAAGTGGAAATCT  850

seq1  GATGAAATATGGCTGGTAGGCAAGTGAGGGCACTGGAGAAGACCAGGGAA  900
      ||||||||||||||||||||| |||||||||||||||| |||||||||||
seq2  GATGAAATATGGCTGGTAGGC-AGTGAGGGCACTGGAG-AGACCAGGGAA  898

seq1  AGAGACAAAGCTATTTCTTTCTATAAGAGGATGGATGGGCAACATTATCA  950
      |||||||||||||||||||||||| ||| ||||||||||| |||||||||
seq2  AGAGACAAAGCTATTTCTTTCTAT-AGA-GATGGATGGGC-ACATTATCA  945

seq1  CCTGCATCAACCACATCACTACTAAACCACATTATTGCTATCCTCAGTGA  1000
      |||||||||  ||||||||||||||||||||||| |||||||||||||||
seq2  CCTGCATCA--CACATCACTACTAAACCACATTA-TGCTATCCTCAGTGA  992

seq1  CTGCTGCTCTGGGCCAGATACT-ATACTAAGGTGTGAGTA  1039
      |||||||||||||||||| ||| ||| |||||||||||||
seq2  CTGCTGCTCTGGGCCAGAAACTAATATTAAGGTGTGAGTA  1032