BAC Information

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BAC

Clone NameB6Ng01-077J16
ChromosomeX (Build37)
Map Location 113,562,283 - 113,749,312
singlet/doubletdoublet
Overlap geneCpxcr1
Upstream geneLOC546363, LOC100039277
Downstream geneEG624153, LOC100039300, EG665045, LOC100039319, LOC624284
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077J16.bB6Ng01-077J16.g
ACCDH893534DH893535
length1,1491,141
definitionDH893534|Mus musculus domesticus DNA, BAC clone: B6Ng01-077J16, 5' end.DH893535|Mus musculus domesticus DNA, BAC clone: B6Ng01-077J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,748,151 - 113,749,312)(113,562,283 - 113,563,426)
sequence
gaattccagatagatcattgttagtatatttaaaatacagtacatttttg
gaaaaggtttctaggcaacaaacattacaatactaggtaaaaaattaacc
ttaaggtatgacaacttagaaacacatttacaaaggtctctctctgacca
tgaatgtgggtcctagagttaaaaggcctagaatctactatggtcactgg
tagcatagagatagcaggctatacaatacatgtggtatctcctctaaggt
tcagcaatgatcaagtgaaagaagtgtctgggatattcattctgggaatt
gggtgaggtctgcctccacagagagcaaacaggtcaccaggttgttagca
aaatcaacttttaggcttctgggcagaaaaacagatattttatctcctct
attgagaaatggctcctttgtgtttaacatttctggtttccctagtgatt
tgtaggcgcaaggacctttgtgcccccaacagaaaactactggatgtatt
tttattactttgtcaactgtatttgtttctgtgttatatttatacacttt
tatttgaacagtgtgatatgttttgaagagactgtgtaattctatatcag
tattatcttcttctagcaagcatttaagtatttgaagatagtcttaattt
aattggaaattaaatttagtccaatttgcattttatgatcatgtggatgc
attaactaacataacttttctggaatagttcgaataaataaattatctat
acttggaaaaatcttcaatctgttcactatggatagaaccatattagcaa
atcatagttaattccttataaaattttgattctaagcacaatggcaacat
taaaatgactattagtgatgcaatcaaaattcctgacatctgtagcagtg
ggccaatcctggaatcttagtaatcatataacaaagttaaaccctctgaa
gaggggaccccatttcacaatgagaaggccaggtcaaagtagcaaccatg
gggcctgtaccagaggaaatacatgtttggattattggataacaattttt
tttccgatggacaaacagctaaacaggattgtttactatatatctgcgga
tagtgtgtctttttaaatatggggtggatttgaaatgtgaataacaccc
gaattcaagtatttatggctatcttctattatgtagtaagtttgtttcac
atttttccattcttggggaaaattaagattggagggggcagttaaaaatg
ataaggtcacaggatctctaagcttaaattattaatgcacatctagagga
gatttcaggttgccattttaaattgggacactaggcagagactatacttt
tgttgctaggtttcacacatgtagtatcattgtgatgcatacaatggaat
tttcagaaggaataagtgtcagtgtaaagggatgaatatcaggagagcag
accaggactcctgaagtccatcttgtagaaaaagactcttaacaatcaga
atggagagaaagggtgagttgaaagagaaaacttgagaaacacagtgagt
gcttcttaatatagatagcattatttttcagtatgtgagaaatgattttg
taatcagttgcaggtttgtccgcccttttttcccacagaagtgtctaaga
ttcactgctctgaatcaggaggtaaatgtgttcacatttgattctatgac
cagatatcaagtagaagtaatacttgaatttgtcattaatctttgaaaat
aatctcaaggtaaaataaaattaaattttgaactatcatatttaagttcc
tacgtatttatggtactacagtataaggaagggaacttccttccttatat
atgcacttatttataagatgtaggctaattgatgctgtttcagccaaagg
atctaagagatatatattgtagatttttttttttccacaacagtcaccgt
gttttaataatttaaatggaactggatctaaataatgctatcagaaagca
gtgcagtgttcagatgtcatgaaaactcttacagggaaacaacatttgaa
atgggggaaaagttgctgggactgtcattctaagaaagtagtggtcaaat
ctcagagacattgatggctgcagtctggagccaacacccttctcaccaca
gtttctaaccagcactggactctataagggtgttatcagtcttcaccatg
tatatgacacttaggaactatgacaacttgttttaaaatatcagcctgca
ttggaagttagtaattcttaatgacttataattacattgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_113748151_113749312
seq2: B6Ng01-077J16.b_48_1196 (reverse)

seq1  GGGTGTTTACTCCCACATTCTCAAAAATCCACTCCATATTTAAAAAAAGA  50
      ||||| ||| |  |||||| ||  |||||||| ||||||||  |||||||
seq2  GGGTG-TTATT--CACATT-TC--AAATCCACCCCATATTT--AAAAAGA  42

seq1  CACAACTATTCTGCAGATATATAGTTAAACAATCCTTGTTTTAGCTGTTT  100
      ||| |||| || |||||||||||| |||||||||||   |||||||||||
seq2  CAC-ACTA-TCCGCAGATATATAG-TAAACAATCCT--GTTTAGCTGTTT  87

seq1  GTCCATCTGGAAAAAAATTGTTATCCAATAATCCAAACATGTAATTTCCT  150
      ||||||| | |||||||||||||||||||||||||||||||| |||||||
seq2  GTCCATCGGAAAAAAAATTGTTATCCAATAATCCAAACATGT-ATTTCCT  136

seq1  CTGGTACAGGCCCCATGGTTGCTACTTTGACCTGG-CTTCTCATTGTGAA  199
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTGGTACAGGCCCCATGGTTGCTACTTTGACCTGGCCTTCTCATTGTGAA  186

seq1  ATGGGGTCCCCTCTTCAGAGGGTTTAACTTTGTTATATGATTACTAAGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTCCCCTCTTCAGAGGGTTTAACTTTGTTATATGATTACTAAGAT  236

seq1  TCCAGGATTGGCCCACTGCTACAGATGTCAGGAATTTTGATTGCATCACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGATTGGCCCACTGCTACAGATGTCAGGAATTTTGATTGCATCACT  286

seq1  AATAGTCATTTTAATGTTGCCATTGTGCTTAGAATCAAAATTTTATAAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCATTTTAATGTTGCCATTGTGCTTAGAATCAAAATTTTATAAGG  336

seq1  AATTAACTATGATTTGCTAATATGGTTCTATCCATAGTGAACAGATTGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACTATGATTTGCTAATATGGTTCTATCCATAGTGAACAGATTGAA  386

seq1  GATTTTTCCAAGTATAGATAATTTATTTATTCGAACTATTCCAGAAAAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTCCAAGTATAGATAATTTATTTATTCGAACTATTCCAGAAAAGT  436

seq1  TATGTTAGTTAATGCATCCACATGATCATAAAATGCAAATTGGACTAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAGTTAATGCATCCACATGATCATAAAATGCAAATTGGACTAAAT  486

seq1  TTAATTTCCAATTAAATTAAGACTATCTTCAAATACTTAAATGCTTGCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCCAATTAAATTAAGACTATCTTCAAATACTTAAATGCTTGCTA  536

seq1  GAAGAAGATAATACTGATATAGAATTACACAGTCTCTTCAAAACATATCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGATAATACTGATATAGAATTACACAGTCTCTTCAAAACATATCA  586

seq1  CACTGTTCAAATAAAAGTGTATAAATATAACACAGAAACAAATACAGTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTCAAATAAAAGTGTATAAATATAACACAGAAACAAATACAGTTG  636

seq1  ACAAAGTAATAAAAATACATCCAGTAGTTTTCTGTTGGGGGCACAAAGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTAATAAAAATACATCCAGTAGTTTTCTGTTGGGGGCACAAAGGT  686

seq1  CCTTGCGCCTACAAATCACTAGGGAAACCAGAAATGTTAAACACAAAGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCGCCTACAAATCACTAGGGAAACCAGAAATGTTAAACACAAAGGA  736

seq1  GCCATTTCTCAATAGAGGAGATAAAATATCTGTTTTTCTGCCCAGAAGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTCTCAATAGAGGAGATAAAATATCTGTTTTTCTGCCCAGAAGCC  786

seq1  TAAAAGTTGATTTTGCTAACAACCTGGTGACCTGTTTGCTCTCTGTGGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTGATTTTGCTAACAACCTGGTGACCTGTTTGCTCTCTGTGGAG  836

seq1  GCAGACCTCACCCAATTCCCAGAATGAATATCCCAGACACTTCTTTCACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACCTCACCCAATTCCCAGAATGAATATCCCAGACACTTCTTTCACT  886

seq1  TGATCATTGCTGAACCTTAGAGGAGATACCACATGTATTGTATAGCCTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATTGCTGAACCTTAGAGGAGATACCACATGTATTGTATAGCCTGC  936

seq1  TATCTCTATGCTACCAGTGACCATAGTAGATTCTAGGCCTTTTAACTCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTATGCTACCAGTGACCATAGTAGATTCTAGGCCTTTTAACTCTA  986

seq1  GGACCCACATTCATGGTCAGAGAGAGACCTTTGTAAATGTGTTTCTAAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCACATTCATGGTCAGAGAGAGACCTTTGTAAATGTGTTTCTAAGT  1036

seq1  TGTCATACCTTAAGGTTAATTTTTTACCTAGTATTGTAATGTTTGTTGCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATACCTTAAGGTTAATTTTTTACCTAGTATTGTAATGTTTGTTGCC  1086

seq1  TAGAAACCTTTTCCAAAAATGTACTGTATTTTAAATATACTAACAATGAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACCTTTTCCAAAAATGTACTGTATTTTAAATATACTAACAATGAT  1136

seq1  CTATCTGGAATTC  1162
      |||||||||||||
seq2  CTATCTGGAATTC  1149

seq1: chrX_113562283_113563426
seq2: B6Ng01-077J16.g_69_1209

seq1  GAATTCAAGTATTTATGGCTATCTTCTATTATGTAGTAAGTTTGTTTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTATTTATGGCTATCTTCTATTATGTAGTAAGTTTGTTTCAC  50

seq1  ATTTTTCCATTCTTGGGGAAAATTAAGATTGGAGGGGGCAGTTAAAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCATTCTTGGGGAAAATTAAGATTGGAGGGGGCAGTTAAAAATG  100

seq1  ATAAGGTCACAGGATCTCTAAGCTTAAATTATTAATGCACATCTAGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTCACAGGATCTCTAAGCTTAAATTATTAATGCACATCTAGAGGA  150

seq1  GATTTCAGGTTGCCATTTTAAATTGGGACACTAGGCAGAGACTATACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGGTTGCCATTTTAAATTGGGACACTAGGCAGAGACTATACTTT  200

seq1  TGTTGCTAGGTTTCACACATGTAGTATCATTGTGATGCATACAATGGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTAGGTTTCACACATGTAGTATCATTGTGATGCATACAATGGAAT  250

seq1  TTTCAGAAGGAATAAGTGTCAGTGTAAAGGGATGAATATCAGGAGAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAAGGAATAAGTGTCAGTGTAAAGGGATGAATATCAGGAGAGCAG  300

seq1  ACCAGGACTCCTGAAGTCCATCTTGTAGAAAAAGACTCTTAACAATCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGACTCCTGAAGTCCATCTTGTAGAAAAAGACTCTTAACAATCAGA  350

seq1  ATGGAGAGAAAGGGTGAGTTGAAAGAGAAAACTTGAGAAACACAGTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAGAAAGGGTGAGTTGAAAGAGAAAACTTGAGAAACACAGTGAGT  400

seq1  GCTTCTTAATATAGATAGCATTATTTTTCAGTATGTGAGAAATGATTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTAATATAGATAGCATTATTTTTCAGTATGTGAGAAATGATTTTG  450

seq1  TAATCAGTTGCAGGTTTGTCCGCCCTTTTTTCCCACAGAAGTGTCTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGTTGCAGGTTTGTCCGCCCTTTTTTCCCACAGAAGTGTCTAAGA  500

seq1  TTCACTGCTCTGAATCAGGAGGTAAATGTGTTCACATTTGATTCTATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGCTCTGAATCAGGAGGTAAATGTGTTCACATTTGATTCTATGAC  550

seq1  CAGATATCAAGTAGAAGTAATACTTGAATTTGTCATTAATCTTTGAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATCAAGTAGAAGTAATACTTGAATTTGTCATTAATCTTTGAAAAT  600

seq1  AATCTCAAGGTAAAATAAAATTAAATTTTGAACTATCATATTTAAGTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAAGGTAAAATAAAATTAAATTTTGAACTATCATATTTAAGTTCC  650

seq1  TACGTATTTATGGTACTACAGTATAAGGAAGGGAACTTCCTTCCTTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTATTTATGGTACTACAGTATAAGGAAGGGAACTTCCTTCCTTATAT  700

seq1  ATGCACTTATTTATAAGATGTAGGCTAATTGATGCTGTTTCAGCCAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTTATTTATAAGATGTAGGCTAATTGATGCTGTTTCAGCCAAAGG  750

seq1  ATCTAAGAGATATATATTGTAGA-TTTTTTTTTTCCACAACAGTCACCGT  799
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATCTAAGAGATATATATTGTAGATTTTTTTTTTTCCACAACAGTCACCGT  800

seq1  GTTTTAATAATTTAAATGGAACTGGATCTAAATAATGCTATCAGAAAGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATAATTTAAATGGAACTGGATCTAAATAATGCTATCAGAAAGCA  850

seq1  GTGCAGTGTTCAGATGTCATGAAAACTCTTACAGGG-AACAACATTTGAA  898
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTGCAGTGTTCAGATGTCATGAAAACTCTTACAGGGAAACAACATTTGAA  900

seq1  ATGGGGGAAAAGGTTGCTGGGACTGTCATTCTAAGAAAGTAGTGGTCAAA  948
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGAAAA-GTTGCTGGGACTGTCATTCTAAGAAAGTAGTGGTCAAA  949

seq1  TCCCAGAGACATTGATGGCTGCAGTCTGGAGCCAACAACCCTTCTCAACC  998
      || ||||||||||||||||||||||||||||||||| ||||||||||  |
seq2  TCTCAGAGACATTGATGGCTGCAGTCTGGAGCCAAC-ACCCTTCTCA--C  996

seq1  CACAGTCTCTAACCAGCACCTGGACTCTATAGGGGTGTTATCAGTCCTCA  1048
      |||||| ||||||||||| |||||||||||| |||||||||||||| || 
seq2  CACAGTTTCTAACCAGCA-CTGGACTCTATAAGGGTGTTATCAGTCTTC-  1044

seq1  ACCATGTATATGACACTTAGGAACTATTGACAAC-TGTTTTAAAATATCA  1097
      |||||||||||||||||||||||||| ||||||| |||||||||||||||
seq2  ACCATGTATATGACACTTAGGAACTA-TGACAACTTGTTTTAAAATATCA  1093

seq1  G-CTGCATT-GAAGTTAGTAATTCCTAAATGACTAATAATTACATTGCT  1144
      | ||||||| ||||||||||||| || ||||||| ||||||||||||||
seq2  GCCTGCATTGGAAGTTAGTAATT-CTTAATGACTTATAATTACATTGCT  1141