BAC Information

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BAC

Clone NameB6Ng01-078C09
ChromosomeX (Build37)
Map Location 137,624,294 - 137,698,207
singlet/doubletdoublet
Overlap geneCol4a6
Upstream geneE230019M04Rik, LOC100041446, EG245643, LOC666424, Prps1, Tsc22d3, Mid2, LOC619612, Tex13, LOC632685, Vsig1, Psmd10, Atg4a, LOC100038961
Downstream geneCol4a5, Irs4, LOC633596, EG666488, LOC622901, EG436234, EG622956, Gucy2f, LOC623006, LOC100039023, Nxt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078C09.bB6Ng01-078C09.g
ACCDH893929DH893930
length1,1211,135
definitionDH893929|Mus musculus domesticus DNA, BAC clone: B6Ng01-078C09, 5' end.DH893930|Mus musculus domesticus DNA, BAC clone: B6Ng01-078C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,697,071 - 137,698,207)(137,624,294 - 137,625,459)
sequence
gaattcttttgagagtctggtgaaagctacatatctcctttcctgtcacc
aaaaatcatgcattgatgccctacttcttcatacagtcttcagggaggcc
gtggagtctctgaagcccattttaaaacctcagtgtaatttgctctgaat
acacaaaggcaccagaggtttctgagtagtttgctggcctgtacacttta
cttccaggaactctgaatctggcctctatgcatgaagtgagttgacaaca
gtgcgggataacagaagcagaaactagaaacaagaagacacatttgtaaa
ctatttccatgcctcatgccagaagtgcagatgtaatgacaggaagtatg
tctgaggcctcaagttttatgtaggaaaaagaagagcaatgagtattcag
gattataaactggttcaagggacagtctcccatctcagtaaaaatggtct
gcaggcaatgagaaatcggaggataaaattaaagggaataattggctttg
aaactcagtttgggaactgggagtagggcagttatgagaaggaataacca
cagtaggcattttgttgccaggcacccatgtgaatcaggcactgtgccaa
ctctctgattgctaagataagttttgccattcctgctgttataatcactg
aaaactttctgtgtggaagacagtatgccaagaactttgtgggacatcgt
gggtatttgtcatttgtaattgcttagcatccaactgtctttcaggtttg
gaaagattctccaattatgtgacatttagtgtaaagttggatcctgcatc
tcatagtagaagccagatactccccatctctgtctttgagtgactagaat
gtgggcacaggacttattctgagtcaacaagatgcatcctgtaggacttt
cagtctgaaccaactgaagccaatatggtgagacaaattcatcacagtat
taggcagtgtagttgtgacatgatactctggccagattctgtcattcatt
tacccatctgagtctttatgttgcagattggcactacaatctagctatta
gtttatattgaataacgttttagatcacatcatacatagacacatgaatg
ttttctctgtctgcttttgta
gaattcattaagttcagaatgcgtgtaggggcacagaaaagaaacaccta
gttgtagttggggaagagatgagtgtgtgatcttgcctctttgtactaac
cagctgtgtgtgctgctctgagactagccattttttcacctatttgaaac
acagatgccatacacctaaccactgctgtgtcagtcacgggaagtgagag
ttgtcaggctccttggtatgtgtcagactgagtgatctatgtgtagctgg
ccttttctgttgatcagcccattgttccacacagcaagcaggttgagtga
ttcatgttaggtgacaggtttcctttagtattagccttgccccccccaaa
cccctgcctaccttctattcctgggcagagaagaggggaggaggcaagtt
gggcagttgtggcacactccctttgggtaaaccctgactactttactggt
cttcctaattatttcacttacccttttggccttcgatgcccggcaaccca
gtgacgcctgacaaacctgggctccccaggaagccaggtgacccttgagg
accaggaaggccttttatcccaggtagacctctttttccagttgatccag
gctgacctatgtctcctctttgacctttctttccagggtgccctgaatgg
ttatagaagaggacacaggtcagcttagtcaggctctggtcaggtttggg
ccactgtttatttctagaggttctctttggctggctaggaggggtttgtc
cacggtcctttaacactacctaaaaagagatgccaagaagcctggtgctg
agttggtcagagcatagtacctaccacccagagcacctccctaaatgctc
atcacttccagcatggcacagtggtgggtaggaaagcaagtaccttgtaa
ttatacttcttcctttatgaatgtggttcacagaggagcctctaaatgag
ctctgggaagcagtggcaagtgggctctagttccctgggacttcaccctg
atcaagttccaatggttgtttctgagcatcatgaaaagaagttaatcttg
actgttgttctgctcagggtcttgcatctagttgcccttttatcctcacc
agccagttaatcagacattcttggcatatgtttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_137697071_137698207
seq2: B6Ng01-078C09.b_46_1166 (reverse)

seq1  TACAAAAGCAGACAGAGAAAACATTCATGTGTCTATGTATGATGGTGATC  50
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TACAAAAGCAGACAGAGAAAACATTCATGTGTCTATGTATGAT-GTGATC  49

seq1  TAAAACCCCTTTATTC-ATATAAAACCTTAATAGGCTAGATTTGTAGTTG  99
      |||||   | |||||| |||||||    ||||| |||||| |||||| ||
seq2  TAAAA---CGTTATTCAATATAAA---CTAATA-GCTAGA-TTGTAG-TG  90

seq1  CCAATCTGCAACATAAAGACTTCCAGAATGGGTAAATGAATGACAGAATC  149
      |||||||||||||||||||||  ||| |||||||||||||||||||||||
seq2  CCAATCTGCAACATAAAGACT--CAG-ATGGGTAAATGAATGACAGAATC  137

seq1  TGGCCAGAGTATCATTGTCACAACTAACACTGCCTAATACTGTGATTGAA  199
      |||||||||||||| |||||||||| ||||||||||||||||||| ||||
seq2  TGGCCAGAGTATCA-TGTCACAACT-ACACTGCCTAATACTGTGA-TGAA  184

seq1  TTTTGTCTCACCATATTGGCTTCAGTTGGTTCAGACTGAAAGTCCTACAG  249
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTGTCTCACCATATTGGCTTCAGTTGGTTCAGACTGAAAGTCCTACAG  233

seq1  GATGCATCTTGTTGACTCAGAATAAGTCCTGTGCCCACATTCTAGTCACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATCTTGTTGACTCAGAATAAGTCCTGTGCCCACATTCTAGTCACT  283

seq1  CAAAGACAGAGATGGGGAGTATCTGGCTTCTACTATGAGATGCAGGATCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACAGAGATGGGGAGTATCTGGCTTCTACTATGAGATGCAGGATCC  333

seq1  AACTTTACACTAAATGTCACATAATTGGAGAATCTTTCCAAACCTGAAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTACACTAAATGTCACATAATTGGAGAATCTTTCCAAACCTGAAAG  383

seq1  ACAGTTGGATGCTAAGCAATTACAAATGACAAATACCCACGATGTCCCAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGGATGCTAAGCAATTACAAATGACAAATACCCACGATGTCCCAC  433

seq1  AAAGTTCTTGGCATACTGTCTTCCACACAGAAAGTTTTCAGTGATTATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCTTGGCATACTGTCTTCCACACAGAAAGTTTTCAGTGATTATAA  483

seq1  CAGCAGGAATGGCAAAACTTATCTTAGCAATCAGAGAGTTGGCACAGTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGAATGGCAAAACTTATCTTAGCAATCAGAGAGTTGGCACAGTGC  533

seq1  CTGATTCACATGGGTGCCTGGCAACAAAATGCCTACTGTGGTTATTCCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCACATGGGTGCCTGGCAACAAAATGCCTACTGTGGTTATTCCTT  583

seq1  CTCATAACTGCCCTACTCCCAGTTCCCAAACTGAGTTTCAAAGCCAATTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAACTGCCCTACTCCCAGTTCCCAAACTGAGTTTCAAAGCCAATTA  633

seq1  TTCCCTTTAATTTTATCCTCCGATTTCTCATTGCCTGCAGACCATTTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTAATTTTATCCTCCGATTTCTCATTGCCTGCAGACCATTTTTA  683

seq1  CTGAGATGGGAGACTGTCCCTTGAACCAGTTTATAATCCTGAATACTCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGGGAGACTGTCCCTTGAACCAGTTTATAATCCTGAATACTCAT  733

seq1  TGCTCTTCTTTTTCCTACATAAAACTTGAGGCCTCAGACATACTTCCTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCTTTTTCCTACATAAAACTTGAGGCCTCAGACATACTTCCTGT  783

seq1  CATTACATCTGCACTTCTGGCATGAGGCATGGAAATAGTTTACAAATGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACATCTGCACTTCTGGCATGAGGCATGGAAATAGTTTACAAATGTG  833

seq1  TCTTCTTGTTTCTAGTTTCTGCTTCTGTTATCCCGCACTGTTGTCAACTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGTTTCTAGTTTCTGCTTCTGTTATCCCGCACTGTTGTCAACTC  883

seq1  ACTTCATGCATAGAGGCCAGATTCAGAGTTCCTGGAAGTAAAGTGTACAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATGCATAGAGGCCAGATTCAGAGTTCCTGGAAGTAAAGTGTACAG  933

seq1  GCCAGCAAACTACTCAGAAACCTCTGGTGCCTTTGTGTATTCAGAGCAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCAAACTACTCAGAAACCTCTGGTGCCTTTGTGTATTCAGAGCAAA  983

seq1  TTACACTGAGGTTTTAAAATGGGCTTCAGAGACTCCACGGCCTCCCTGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTGAGGTTTTAAAATGGGCTTCAGAGACTCCACGGCCTCCCTGAA  1033

seq1  GACTGTATGAAGAAGTAGGGCATCAATGCATGATTTTTGGTGACAGGAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTATGAAGAAGTAGGGCATCAATGCATGATTTTTGGTGACAGGAAA  1083

seq1  GGAGATATGTAGCTTTCACCAGACTCTCAAAAGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||
seq2  GGAGATATGTAGCTTTCACCAGACTCTCAAAAGAATTC  1121

seq1: chrX_137624294_137625459
seq2: B6Ng01-078C09.g_69_1203

seq1  GAATTCATTAAGTTCAGAATGCGTGTAGGGGCACAGAAAAGAAACACCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAGTTCAGAATGCGTGTAGGGGCACAGAAAAGAAACACCTA  50

seq1  GTTGTAGTTGGGGAAGAGATGAGTGTGTGATCTTGCCTCTTTGTACTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGTTGGGGAAGAGATGAGTGTGTGATCTTGCCTCTTTGTACTAAC  100

seq1  CAGCTGTGTGTGCTGCTCTGAGACTAGCCATTTTTTCACCTATTTGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTGTGTGCTGCTCTGAGACTAGCCATTTTTTCACCTATTTGAAAC  150

seq1  ACAGATGCCATACACCTAACCACTGCTGTGTCAGTCACGGGAAGTGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGCCATACACCTAACCACTGCTGTGTCAGTCACGGGAAGTGAGAG  200

seq1  TTGTCAGGCTCCTTGGTATGTGTCAGACTGAGTGATCTATGTGTAGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGGCTCCTTGGTATGTGTCAGACTGAGTGATCTATGTGTAGCTGG  250

seq1  CCTTTTCTGTTGATCAGCCCATTGTTCCACACAGCAAGCAGGTTGAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTGTTGATCAGCCCATTGTTCCACACAGCAAGCAGGTTGAGTGA  300

seq1  TTCATGTTAGGTGACAGGTTTCCTTTAGTATTAGCCTTGCCCCCCCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTAGGTGACAGGTTTCCTTTAGTATTAGCCTTGCCCCCCCCAAA  350

seq1  CCCCTGCCTACCTTCTATTCCTGGGCAGAGAAGAGGGGAGGAGGCAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCCTACCTTCTATTCCTGGGCAGAGAAGAGGGGAGGAGGCAAGTT  400

seq1  GGGCAGTTGTGGCACACTCCCTTTGGGTAAACCCTGACTACTTTACTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTTGTGGCACACTCCCTTTGGGTAAACCCTGACTACTTTACTGGT  450

seq1  CTTCCTAATTATTTCACTTACCCTTTTGGCCTTCGATGCCCGGCAACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAATTATTTCACTTACCCTTTTGGCCTTCGATGCCCGGCAACCCA  500

seq1  GTGACGCCTGACAAACCTGGGCTCCCCAGGAAGCCAGGTGACCCTTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACGCCTGACAAACCTGGGCTCCCCAGGAAGCCAGGTGACCCTTGAGG  550

seq1  ACCAGGAAGGCCTTTTATCCCAGGTAGACCTCTTTTTCCAGTTGATCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAAGGCCTTTTATCCCAGGTAGACCTCTTTTTCCAGTTGATCCAG  600

seq1  GCTGACCTATGTCTCCTCTTTGACCTTTCTTTCCAGGGTGCCCTGAATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCTATGTCTCCTCTTTGACCTTTCTTTCCAGGGTGCCCTGAATGG  650

seq1  TTATAGAAGAGGACACAGGTCAGCTTAGTCAGGCTCTGGTCAGGTTTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAAGAGGACACAGGTCAGCTTAGTCAGGCTCTGGTCAGGTTTGGG  700

seq1  CCACTGTTTATTTCTAGAGGTTCTCTTTGGCTGGCTAGGAGGGGTTTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTTTATTTCTAGAGGTTCTCTTTGGCTGGCTAGGAGGGGTTTGTC  750

seq1  CACGGTCCTTTAACACTACCTAAAAAGAGATGCCAAGAAGCCTGGTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTCCTTTAACACTACCTAAAAAGAGATGCCAAGAAGCCTGGTGCTG  800

seq1  AGTTGGTCAGAGCATTAGTACCTACCACCCAGAGCACCTCCCTAAATGCT  850
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGTTGGTCAGAGCA-TAGTACCTACCACCCAGAGCACCTCCCTAAATGCT  849

seq1  CATCACTTCCAGCATGGCACAGTGGTGGGTAGGAAAAGCAAGTACCTTGT  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CATCACTTCCAGCATGGCACAGTGGTGGGTAGG-AAAGCAAGTACCTTGT  898

seq1  AATTATAACTTCTTCCTTTATGAATGTGGTTCACAGAGGAGCCTCTAAAT  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAT-ACTTCTTCCTTTATGAATGTGGTTCACAGAGGAGCCTCTAAAT  947

seq1  GGAGCTCTGGGAAGCCAGGGTGGCAAGTGGGCTCTAGTTTCCCTGGGACT  1000
       ||||||||||||||    |||||||||||||||||| ||||||||||||
seq2  -GAGCTCTGGGAAGC---AGTGGCAAGTGGGCTCTAG-TTCCCTGGGACT  992

seq1  TCAACCCTGAATCAAGTTCCAATGGTTGTTTCCTGAGCCAATTCATGAAA  1050
      || |||||| ||||||||||||||||||||| ||||||    ||||||||
seq2  TC-ACCCTG-ATCAAGTTCCAATGGTTGTTT-CTGAGC---ATCATGAAA  1036

seq1  TAGAGGTTAAATCTGAACTGTTGTTCTGGCTTTCCAGGGAGTCTTGCATC  1100
       ||| ||| |||||  ||||||||||| |||   ||||  ||||||||||
seq2  -AGAAGTT-AATCTTGACTGTTGTTCT-GCT---CAGG--GTCTTGCATC  1078

seq1  TAGGGTTGCCCTTTTAATCCCTCAAACAAGCAGTTAAATCAGCCAGTTCT  1150
      ||  ||||||||||||   |||| | ||  ||||| |||||| || ||| 
seq2  TA--GTTGCCCTTTTA--TCCTC-ACCAGCCAGTT-AATCAGACA-TTC-  1120

seq1  TTGGCATTAGGTTTGA  1166
      |||||| || ||||||
seq2  TTGGCA-TATGTTTGA  1135