BAC Information

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BAC

Clone NameB6Ng01-078J20
ChromosomeX (Build37)
Map Location 164,407,459 - 164,566,037
singlet/doubletdoublet
Overlap geneFrmpd4
Upstream geneLOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x, Tlr8, Tlr7, Prps2, EG627311
Downstream geneEG667822, EG637566, Msl31, Arhgap6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078J20.bB6Ng01-078J20.g
ACCDH894263DH894264
length1,2121,148
definitionDH894263|Mus musculus domesticus DNA, BAC clone: B6Ng01-078J20, 5' end.DH894264|Mus musculus domesticus DNA, BAC clone: B6Ng01-078J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,564,805 - 164,566,037)(164,407,459 - 164,408,618)
sequence
gaattcttctctaactactgtatcttaggtacccactttctcaccccttc
aaataaaattgagtttaattctttgtacatcatggtctattttctcagtt
atagccatttcttatttctctttctcctcctcctcctcttcctccttctt
attgcctattgtctacccctgtcttagttacttttgtattcctatgatgg
cacatcataatgaagtcaacttataaaagaaagtgtttaataggggaatt
gcttaagtttcagaagggaagccatcatgttgggggaaatggcagcaggc
aggcaggcatagtgctagagcagtaactgagaccttacatcctgatcagt
atgttggaggcagagagaatgagactgagcctggttttggatcttttaag
ctctaaatctcatcctcagtgacataccttcttcagcaaggccacatctc
caaaatcttatttaaaatggtttcaccaactaggaaccaaggattcaaat
atatgaggctatgggattcgttttcattctcactcaaaacactacaaatc
ctgccttccctgtccccaaatgaggggactatgtgagcaaagtcttacat
tgttgcctggagtaatctgtagtacatgggaggatctccacaaataaata
ttaaatgggtgaatactttgcttttatttactcactagtgatattaggta
ataagacccagcctttaccctatgaagaacatctaggttcacagtggatt
ctcaggacaacagtgaagaaattcttcactcttgcttctgagaggccccc
aggaaacaaaatataacatgattctggaccttggttttgggccttaccaa
tgtgcattgaatttgtaggaaatgttgctcaactttggttagtcactaca
caactccctgtttaacttcacggtacactcaaaggaagaactctttttta
atagtactgtccatggtcatgaggcttatggaaatcttttctggagttag
cagcatgtgcctcatttcccatgtagtccaattacagtctatggtaagat
tgtatttattattgtacttagacatgggaaagtgagtaaagaacttgggc
actgatctgatggcctatgtatccacaaaggcttgcaaatggtcctgttc
gatgtggttcggagtagcactagcagttattcaggcagaaggttctcact
gttgaactctgt
gaattcaagtttcaacttgagctacatagtgacttgtaagacaggcaata
ctagaaatcctgtctagaaaagaatagtgaaagaagaaaaggaggagata
aaagagaaggagggaaaaggaaaaagaggaagaaaaaggagcaatgagat
aaaaggaagaaaagaagaaatgaagaaggagagggagggaaggagaaata
tcctaaagaacattaagatctctcacacacatggaaaattaactccacat
tctgtattattaaaaggactcttccatacagaaaagacccaccaagttca
cagagtggattagtgaatggctaatgaatgactaagtacatgaatgaaat
ttgatgtcattatataatgatggaggatgttgaaactttacagaactggt
atagcaatagagaaatactgtctcctctgagaataaaaattaagtgaggg
cgatcacacaaggcagaggcatttcagttagggaagcaaattaaattaca
tgcccttttgagctcaaagatacaaacacagtgaaaacagaggagtctcc
acaaagtaatttcttaatgcatatatgaaagtgtagtatagagtcttaga
ctccatgtctccctcggggaacacatacttaagaccaaagcatgaacact
acccttggtctctgtgttccatgttctcgtatgcatctgctaagatgcca
ccccaagtaattcgaagttcagaaccctggaaacttccatggtcaaacat
ggcaccagaagttctgcatgccatatgatcatttcttgtatttatgtaaa
atatcatttttattcctttctttcctggaacaatctgtagctggaaaata
atccatgttaatgtgcatattttttaaaagcctttttctatgtctctgat
tatgtatgatttgaaagcagcatagaaaactgctttgtaaaagtcatact
atactttggaagaagacagaaattgtaagcaaattggatagatgaacacc
actttatttacagttttagatttctccttaaatttcaaattccaaattac
tccacacattctgattgcttttaagaagttggtttgttaaaggcaaatgc
aacaacaaaaaacatactatctcgtgcaatcatcttatttacaatggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_164564805_164566037
seq2: B6Ng01-078J20.b_44_1255 (reverse)

seq1  ACAGAGTTCAACA-TGAGAAACTTTTCCTAGCCTTGTGAAAATAACTGCT  49
      ||||||||||||| |||||| ||| |    ||||      ||||||||| 
seq2  ACAGAGTTCAACAGTGAGAACCTTCT----GCCT-----GAATAACTGC-  40

seq1  TAGTTTGCTTTACTTCGAACCAACATTCTGACAGACATATTGTCAAGCTT  99
      |||  |||  |||| |||||| ||| ||  ||||    |||  ||||| |
seq2  TAG--TGC--TACTCCGAACC-ACA-TCGAACAGGACCATTTGCAAGCCT  84

seq1  TGTTGGATACATAAGCCATCAGATTCAGTG-CCAAGTTCTTTACTCACTT  148
      |  |||||||||| ||||||||| |||||| |||||||||||||||||||
seq2  TTGTGGATACATAGGCCATCAGA-TCAGTGCCCAAGTTCTTTACTCACTT  133

seq1  TCCCCATGTCTAAAGTACAATTAATAATACAATCTTACCATAGGACTTGG  198
      | ||||||||| ||||||||| |  ||||||||||||||||| ||||  |
seq2  T-CCCATGTCT-AAGTACAATAATAAATACAATCTTACCATA-GACT--G  178

seq1  TAATTGGACTACATGGGAATTGAGGCACATGGCTGCTAACTCCAG-AAAG  247
      ||||||||||||||||||| |||||||||| |||||||||||||| ||||
seq2  TAATTGGACTACATGGGAAATGAGGCACAT-GCTGCTAACTCCAGAAAAG  227

seq1  ATTTCCATAAGCCTCATGACCATGGACAGTACTATTAAAAAAGAGTTTCT  297
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATTTCCATAAGCCTCATGACCATGGACAGTACTATTAAAAAAGAG-TTCT  276

seq1  TCCTTTGAGTGTACCGTGAAGTTAAACAGGGAGTTGTGTAGTGACTAACC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGAGTGTACCGTGAAGTTAAACAGGGAGTTGTGTAGTGACTAACC  326

seq1  AAAGTTGAGCAACATTTCCTACAAATTCAATGCACATTGGTAAGGCCCAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGAGCAACATTTCCTACAAATTCAATGCACATTGGTAAGGCCCAA  376

seq1  AACCAAGGTCCAGAATCATGTTATATTTTGTTTCCTGGGGGCCTCTCAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGGTCCAGAATCATGTTATATTTTGTTTCCTGGGGGCCTCTCAGA  426

seq1  AGCAAGAGTGAAGAATTTCTTCACTGTTGTCCTGAGAATCCACTGTGAAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGTGAAGAATTTCTTCACTGTTGTCCTGAGAATCCACTGTGAAC  476

seq1  CTAGATGTTCTTCATAGGGTAAAGGCTGGGTCTTATTACCTAATATCACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGTTCTTCATAGGGTAAAGGCTGGGTCTTATTACCTAATATCACT  526

seq1  AGTGAGTAAATAAAAGCAAAGTATTCACCCATTTAATATTTATTTGTGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTAAATAAAAGCAAAGTATTCACCCATTTAATATTTATTTGTGGA  576

seq1  GATCCTCCCATGTACTACAGATTACTCCAGGCAACAATGTAAGACTTTGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCCCATGTACTACAGATTACTCCAGGCAACAATGTAAGACTTTGC  626

seq1  TCACATAGTCCCCTCATTTGGGGACAGGGAAGGCAGGATTTGTAGTGTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAGTCCCCTCATTTGGGGACAGGGAAGGCAGGATTTGTAGTGTTT  676

seq1  TGAGTGAGAATGAAAACGAATCCCATAGCCTCATATATTTGAATCCTTGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGAATGAAAACGAATCCCATAGCCTCATATATTTGAATCCTTGG  726

seq1  TTCCTAGTTGGTGAAACCATTTTAAATAAGATTTTGGAGATGTGGCCTTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGTTGGTGAAACCATTTTAAATAAGATTTTGGAGATGTGGCCTTG  776

seq1  CTGAAGAAGGTATGTCACTGAGGATGAGATTTAGAGCTTAAAAGATCCAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAAGGTATGTCACTGAGGATGAGATTTAGAGCTTAAAAGATCCAA  826

seq1  AACCAGGCTCAGTCTCATTCTCTCTGCCTCCAACATACTGATCAGGATGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGCTCAGTCTCATTCTCTCTGCCTCCAACATACTGATCAGGATGT  876

seq1  AAGGTCTCAGTTACTGCTCTAGCACTATGCCTGCCTGCCTGCTGCCATTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTCAGTTACTGCTCTAGCACTATGCCTGCCTGCCTGCTGCCATTT  926

seq1  CCCCCAACATGATGGCTTCCCTTCTGAAACTTAAGCAATTCCCCTATTAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAACATGATGGCTTCCCTTCTGAAACTTAAGCAATTCCCCTATTAA  976

seq1  ACACTTTCTTTTATAAGTTGACTTCATTATGATGTGCCATCATAGGAATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTCTTTTATAAGTTGACTTCATTATGATGTGCCATCATAGGAATA  1026

seq1  CAAAAGTAACTAAGACAGGGGTAGACAATAGGCAATAAGAAGGAGGAAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTAACTAAGACAGGGGTAGACAATAGGCAATAAGAAGGAGGAAGA  1076

seq1  GGAGGAGGAGGAGAAAGAGAAATAAGAAATGGCTATAACTGAGAAAATAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGGAGAAAGAGAAATAAGAAATGGCTATAACTGAGAAAATAG  1126

seq1  ACCATGATGTACAAAGAATTAAACTCAATTTTATTTGAAGGGGTGAGAAA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGATGTACAAAGAATTAAACTCAATTTTATTTGAAGGGGTGAGAAA  1176

seq1  GTGGGTACCTAAGATACAGTAGTTAGAGAAGAATTC  1233
      ||||||||||||||||||||||||||||||||||||
seq2  GTGGGTACCTAAGATACAGTAGTTAGAGAAGAATTC  1212

seq1: chrX_164407459_164408618
seq2: B6Ng01-078J20.g_69_1216

seq1  GAATTCAAG-GGCAACTTGAGCTACATAGTGACTTGTAAGACAGGCAATA  49
      |||||||||   ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTTCAACTTGAGCTACATAGTGACTTGTAAGACAGGCAATA  50

seq1  CTAGAAATCCTGTCTAGAAAAGAATAGTGAAAGAAGAAAAGGAGGAGATA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAATCCTGTCTAGAAAAGAATAGTGAAAGAAGAAAAGGAGGAGATA  100

seq1  AAAGAGAAGGAGGGAAAAGGAAAAAGAGGAAGAAAAAGGAGCAATGAGAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAGGAGGGAAAAGGAAAAAGAGGAAGAAAAAGGAGCAATGAGAT  150

seq1  AAAAGGAAGAAAAGAAGAAATGAAGAAGGAGAGGGAGGGAAGGAGAAATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAGAAAAGAAGAAATGAAGAAGGAGAGGGAGGGAAGGAGAAATA  200

seq1  TCCTAAAGAACATTAAGATCTCTCACACACATGGAAAATTAACTCCACAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAGAACATTAAGATCTCTCACACACATGGAAAATTAACTCCACAT  250

seq1  TCTGTATTATTAAAAGGACTCTTCCATACAGAAAAGACCCACCAAGTTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTATTAAAAGGACTCTTCCATACAGAAAAGACCCACCAAGTTCA  300

seq1  CAGAGTGGATTAGTGAATGGCTAATGAATGACTAAGTACATGAATGAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGGATTAGTGAATGGCTAATGAATGACTAAGTACATGAATGAAAT  350

seq1  TTGATGTCATTATATAATGATGGAGGATGTTGAAACTTTACAGAACTGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTCATTATATAATGATGGAGGATGTTGAAACTTTACAGAACTGGT  400

seq1  ATAGCAATAGAGAAATACTGTCTCCTCTGAGAATAAAAATTAAGTGAGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAATAGAGAAATACTGTCTCCTCTGAGAATAAAAATTAAGTGAGGG  450

seq1  CGATCACACAAGGCAGAGGCATTTCAGTTAGGGAAGCAAATTAAATTACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCACACAAGGCAGAGGCATTTCAGTTAGGGAAGCAAATTAAATTACA  500

seq1  TGCCCTTTTGAGCTCAAAGATACAAACACAGTGAAAACAGAGGAGTCTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTTTGAGCTCAAAGATACAAACACAGTGAAAACAGAGGAGTCTCC  550

seq1  ACAAAGTAATTTCTTAATGCATATATGAAAGTGTAGTATAGAGTCTTAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTAATTTCTTAATGCATATATGAAAGTGTAGTATAGAGTCTTAGA  600

seq1  CTCCATGTCTCCCTCGGGGAACACATACTTAAGACCAAAGCATGAACACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGTCTCCCTCGGGGAACACATACTTAAGACCAAAGCATGAACACT  650

seq1  ACCCTTGGTCTCTGTGTTCCATGTTCTCGTATGCATCTGCTAAGATGCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGGTCTCTGTGTTCCATGTTCTCGTATGCATCTGCTAAGATGCCA  700

seq1  CCCCAAGTAATTCGAAGTTCAGAACCCTGGAAACTTCCATGGTCAAACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGTAATTCGAAGTTCAGAACCCTGGAAACTTCCATGGTCAAACAT  750

seq1  GGCACCAGAAGTTCTGCATGCCATATGATCATTTCTTGTATTTATGTAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCAGAAGTTCTGCATGCCATATGATCATTTCTTGTATTTATGTAAA  800

seq1  ATATCATTTTTATTCCTTTCTTTCCTGGAACAATCTGTAGCTGGAAAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTTTTATTCCTTTCTTTCCTGGAACAATCTGTAGCTGGAAAATA  850

seq1  ATCCATGTTAATGTGCATATTTTTTAAAAGCCTTTTTCTATGTCTCTGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGTTAATGTGCATATTTTTTAAAAGCCTTTTTCTATGTCTCTGAT  900

seq1  TATGTATGATTTGAAAGCAAGCATAGAAAAACTGCTTTGTAAAAAGTCAT  949
      |||||||||||||||||| ||||||| ||||||||||||| |||||||||
seq2  TATGTATGATTTGAAAGC-AGCATAG-AAAACTGCTTTGT-AAAAGTCAT  947

seq1  ACTATACTTTGGAAGAAGACAGAAATTGTAAGCAAATTGGATAAGATGAA  999
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACTATACTTTGGAAGAAGACAGAAATTGTAAGCAAATTGGAT-AGATGAA  996

seq1  CACCAACTTTATTTAACAGTTTTAGATATCTCCTAAAATTTCAAATTCCA  1049
      |||| ||||||||| |||||||||||| |||||| |||||||||||||||
seq2  CACC-ACTTTATTT-ACAGTTTTAGATTTCTCCTTAAATTTCAAATTCCA  1044

seq1  AGATTACTCAACACATTCTGAATGCTTTTTAAGAAGTTTGTTTG-TAAAA  1098
      | ||||||| ||||||||||| ||| |||||||||||| ||||| |||| 
seq2  A-ATTACTCCACACATTCTGATTGC-TTTTAAGAAGTTGGTTTGTTAAAG  1092

seq1  GCAAATGCAAACAACAAAAAAACCATACTATCTTGTCAAATCATCTTTAT  1148
      |||||||| ||||||||||||  |||||||||| ||  ||||||| ||||
seq2  GCAAATGC-AACAACAAAAAA--CATACTATCTCGTGCAATCATC-TTAT  1138

seq1  TTATACAATGGC  1160
      |  |||||||||
seq2  T--TACAATGGC  1148