BAC Information

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BAC

Clone NameB6Ng01-079F01
ChromosomeX (Build37)
Map Location 30,773,892 - 30,999,183
singlet/doubletdoublet
Overlap geneLOC665014, EG546205, LOC100040533
Upstream geneLOC100039212, EG664989, LOC664996, LOC100039467, LOC100039481, LOC100039224, LOC100039500, LOC100040448, LOC100040458, LOC100040467, EG546176, LOC100040482, LOC629997, 1700017G21Rik
Downstream geneLOC100039328, LOC100040552, LOC100040575, LOC100040585, LOC100039362, LOC100040606, LOC100040612, LOC673784, LOC100040650, LOC100040662, LOC100039419, LOC100039429, LOC100040698, LOC630028, LOC100040722, LOC100040732, LOC100040743
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079F01.bB6Ng01-079F01.g
ACCDH894758DH894759
length1,0531,070
definitionDH894758|Mus musculus domesticus DNA, BAC clone: B6Ng01-079F01, 5' end.DH894759|Mus musculus domesticus DNA, BAC clone: B6Ng01-079F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,998,108 - 30,999,183)(30,773,892 - 30,775,977)
sequence
ttatctaaacagtcccaggtgccaagtggagacaagaaggtgagggtgac
actgctcccatcaaagggtcagccagatcttcagggtgagagttgatgaa
ggtctggtttcccacagtttggtctctcacaagtggtaattaagaagaga
ccagcatcattgagttgaagtcttctgggaagtattttctgagagcagaa
agaagctatgctccagagatagcccaggttgtaacttctgttgcagctgg
agttggtaatttgtaagaatcacccagatggtactggttttgaagacata
aaggtgtcttggataacagctgaggcttggcagtagttgagacttgtaac
catgaagagagcctatgagaggctattggtaaagcctagttgtagcagaa
gacccaagagtattggagatgccagtacaatgggatgatcaccaaaaaca
gcagcagcaaaccacccccacagtgacacacctactccaatcaggccaca
ccaccactccctgggccaagcatatacaaaccatcacagcactatagatg
agttgtttattagtgtttaggtatatccttacccagatgagcaatccatt
tggcagtatcctcatgtagaaataaaatgctgaggcaaagaatattgatt
ttctgggcaatattgcctttgtgaattcattgctaaccctagtgtccaaa
gcacatgacaacagtaaagatcctatcttgcccctcccaccatatgatta
acgtcattaataaattttctgctgtctcaagcaaattcattggaggttaa
ataccttaacattcagctggatggtgatggctcatgcctttaatcccaga
actcagaggcaaatctaggcatatctctgagtttgaggtcagcctggtct
atatagtatgtctcagacagccagggatacaggagagatcctgtctgcaa
acaaataatatacaatataatataacaaaacatgcacatctactgaaagt
atttgctatagatgctgatgaaggcttctaagctaacctatatgctgtca
gca
gaattccccaaaaggggaacaatagactctcctcagtgactggctgttct
tttcccagatactaggtgctctgctgagtctagagccctgcccccatagg
atagttgcaaatctgtttggaagtcaggaagagctttaaagtgcctctcc
tcccttcattttagtgtcctgagcttccctgcctgctgcccccagtcccc
tctgttttccctggctgcttccaggtacccacctccgggctccaccttgt
tctttccagaacctcagtctggctctgaaggacatccccaggttctgctg
ctcactgcagatcccacctcccaactcttcccctttgtcttcccctgtgc
gggggttcccactgctactttgtttctcctgaggggctcagtcccatccc
cctccaccaccaccactgctccaggacgcccaccttttagcctgcccttt
ctagtgtcctactgccagagatagtggctgccagagggcctccggacacc
ttgtggccacttctgctaaaagcctgaggagaggtgaaggagtccagccc
agggagagcttgccagaggtgagaaggaaagatcctcctgctgcaggagg
caagagttgtgtgagcccgtgactgggcagatgaagtgactgttgctggt
gtcctggtgctgctggtgtgctcccgggtccttcagcttagctctctgga
ggccaagatcctttgccaccttgagattcagccaaaggcttcagcaataa
tagttccctcccctttcccagagaccagcctcctgcctgcaaagagtcgc
ctccctactacctatccccttccactgttttagagttctgttccactaga
acagaactcagggtgatcaataatattatttaaagctagtttttcttttt
atctaatacatgattattgcttatttaatgtatactgtctttaatgtgta
aaatttgatttgcagtgaatgttgctttctctcagtctctgaatttttct
cttttctttttttaattaggtattttcttcatttacatttcatgctatct
gaagcccctcatgccccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_30998108_30999183
seq2: B6Ng01-079F01.b_57_1109 (reverse)

seq1  TGCTGACAGCATATAGTTTAGCTTTAGAAAAGGCTTTCATTCAGCATCTA  50
      |||||||||||||||| ||||| ||||||   || |||| ||||||||||
seq2  TGCTGACAGCATATAGGTTAGC-TTAGAA---GCCTTCA-TCAGCATCTA  45

seq1  TAGCCAAATACTTTCCAGTTAAGAATGTTGCATTGTTTTGTTTATATTTA  100
      ||| |||||||||| ||||  || ||| |||| ||||||| ||||| |||
seq2  TAG-CAAATACTTT-CAGT--AG-ATG-TGCA-TGTTTTG-TTATA-TTA  86

seq1  TATTTGTATTATTTTATTTGTTTTCCAAGACAGGATCTCTCCCTGTAGCC  150
      ||||     ||| |||||||||| |  ||||||||||||| |||||| ||
seq2  TATT----GTATATTATTTGTTTGC--AGACAGGATCTCT-CCTGTATCC  129

seq1  CTGGCTGTCCTGAGACATACTATATAGACCAGGCTGACCTCAAACTCAGA  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGT-CTGAGACATACTATATAGACCAGGCTGACCTCAAACTCAGA  178

seq1  GATATGCCTAGATTTGCCTCCTGAGTTCTGGGATTAAAGGCATGAGCCAT  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GATATGCCTAGATTTGCCT-CTGAGTTCTGGGATTAAAGGCATGAGCCAT  227

seq1  CACCATCCAGCTGAATGTTAAGATATTTAACCTCCAATGAATTTGCTTGA  300
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CACCATCCAGCTGAATGTTAAGGTATTTAACCTCCAATGAATTTGCTTGA  277

seq1  GACAGCAGAAAATTTATTAATGACGTTAATCATATGGTGGGAGGGGCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGAAAATTTATTAATGACGTTAATCATATGGTGGGAGGGGCAAG  327

seq1  ATAGGATCTTTACTGTTGTCATGTGCTTTGGACACTAGGGTTAGCAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATCTTTACTGTTGTCATGTGCTTTGGACACTAGGGTTAGCAATGA  377

seq1  ATTCACAAAGGCCATATTGCCCAGAAAATCAATATTCTTTGCCTCAGCAT  450
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATTCACAAAGGCAATATTGCCCAGAAAATCAATATTCTTTGCCTCAGCAT  427

seq1  TTTATTTCTACATGAGGATACTGCCAAATGGATTGCTCATCTGGGTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTACATGAGGATACTGCCAAATGGATTGCTCATCTGGGTAAGG  477

seq1  ATATACCTAAACACTAATAAACAACTCATCTATAGTGCTGTGATGGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCTAAACACTAATAAACAACTCATCTATAGTGCTGTGATGGTTTG  527

seq1  TATATGCTTGGCCCAGGGAGTGGTGGTGTGGCCTGATTGGAGTAGGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCTTGGCCCAGGGAGTGGTGGTGTGGCCTGATTGGAGTAGGTGTG  577

seq1  TCACTGTGGGGGTGGTTTGCTGCTGCTGTTTTTGGTGATCATCCCATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTGGGGGTGGTTTGCTGCTGCTGTTTTTGGTGATCATCCCATTGT  627

seq1  ACTGGCATCTCCAATACTCTTGGGTCTTCTGCTACAACTAGGCTTTACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCATCTCCAATACTCTTGGGTCTTCTGCTACAACTAGGCTTTACCA  677

seq1  ATAGCCTCTCATAGGCTCTCTTCATGGTTACAAGTCTCAACTACTGCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTCTCATAGGCTCTCTTCATGGTTACAAGTCTCAACTACTGCCAA  727

seq1  GCCTCAGCTGTTATCCAAGACACCTTTATGTCTTCAAAACCAGTACCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCTGTTATCCAAGACACCTTTATGTCTTCAAAACCAGTACCATC  777

seq1  TGGGTGATTCTTACAAATTACCACCTCCAGCTGCAACAGAAGATACAACC  850
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  TGGGTGATTCTTACAAATTACCAACTCCAGCTGCAACAGAAGTTACAACC  827

seq1  TGGGCTATCTCTGGAGCATAGCTTCTTTCTGCTCTCAGAAAATACTTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTATCTCTGGAGCATAGCTTCTTTCTGCTCTCAGAAAATACTTCCC  877

seq1  AGAAGACTTCAACTCAATGATGCTGGTCTCTTCTTAATTACCACTTGTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACTTCAACTCAATGATGCTGGTCTCTTCTTAATTACCACTTGTGA  927

seq1  GAGACCAAACTGTGGGAAACCAGACCTTCATCAACTCTCACCCTGAAGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCAAACTGTGGGAAACCAGACCTTCATCAACTCTCACCCTGAAGAT  977

seq1  CTGGCTGACCCTTTGATGGGAGCAGTGTCACCCTCACCTTCTTGTCTCCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGACCCTTTGATGGGAGCAGTGTCACCCTCACCTTCTTGTCTCCA  1027

seq1  CTTGGCACCTGGGACTGTTTAGATAA  1076
      ||||||||||||||||||||||||||
seq2  CTTGGCACCTGGGACTGTTTAGATAA  1053

seq1: chrX_30773892_30775977
seq2: B6Ng01-079F01.g_66_1135

seq1  GAATTCCCCAAAAGGGGAACAAGAGACTCTCCTCAGTGACTGGCTGTTCT  50
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAATTCCCCAAAAGGGGAACAATAGACTCTCCTCAGTGACTGGCTGTTCT  50

seq1  TTTCCCAGATACTAGGTGCTCTGCTGAGTCTAGAGCCCTGCCCCCATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGATACTAGGTGCTCTGCTGAGTCTAGAGCCCTGCCCCCATAGG  100

seq1  ATAGTTGCAAATCTGTTTGGAAGTCAGGAAGAGCTGTAAAGTGCCTCTCC  150
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATAGTTGCAAATCTGTTTGGAAGTCAGGAAGAGCTTTAAAGTGCCTCTCC  150

seq1  TCCCTTCATTTTAGTGTCCTGAGCTTCCCTGCCTGCTGCCCCCAGTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCATTTTAGTGTCCTGAGCTTCCCTGCCTGCTGCCCCCAGTCCCC  200

seq1  TCTGTTTTCCCTGGCTGCTTCCAGGTACCCACCTCCGGAATCCACCTTGT  250
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  TCTGTTTTCCCTGGCTGCTTCCAGGTACCCACCTCCGGGCTCCACCTTGT  250

seq1  TCTTTCCAGAACCTCAGTCTGGCTCTGAAGGACATCCCCAGTTTCTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTTTCCAGAACCTCAGTCTGGCTCTGAAGGACATCCCCAGGTTCTGCTG  300

seq1  CTCACTGCAGATCCCCCCTCCCAACTCTTCCCCTTTGTCTTCCCCTGGGC  350
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  CTCACTGCAGATCCCACCTCCCAACTCTTCCCCTTTGTCTTCCCCTGTGC  350

seq1  GGGGGTTCCCACTGCTACTTTGTTTCTCCTGAGGGGCTCAGTCCCATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTTCCCACTGCTACTTTGTTTCTCCTGAGGGGCTCAGTCCCATCCC  400

seq1  CCTCCACCACCACCACTGCTCCAGGACACCCACCTTTTAGCCTGCCCTTT  450
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCTCCACCACCACCACTGCTCCAGGACGCCCACCTTTTAGCCTGCCCTTT  450

seq1  CTAGTGTCCTACTGCCAGAGATAGTGGCTGCCAGAGGGGCTCCGGACACC  500
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTAGTGTCCTACTGCCAGAGATAGTGGCTGCCAGAGGGCCTCCGGACACC  500

seq1  TTGTGGCCACTTCTGCTAAAAGCCTGAGGAGAGGTGAAGGAGTCCAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCCACTTCTGCTAAAAGCCTGAGGAGAGGTGAAGGAGTCCAGCCC  550

seq1  AGGGAGAGCTTGCCAGAGGTGAGAAAGAAAGATCCTCCTGCTGCAGGAGG  600
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGGAGAGCTTGCCAGAGGTGAGAAGGAAAGATCCTCCTGCTGCAGGAGG  600

seq1  CAAGAGTTGTGTGAGCCCATGACTGGGCAGATGAAGTGACTGTTGCTGGT  650
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAAGAGTTGTGTGAGCCCGTGACTGGGCAGATGAAGTGACTGTTGCTGGT  650

seq1  GTCCTGGTGCTGCTGGTGTGCTCCCGGGTCCTTCAGCTTAGCTCTCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGTGCTGCTGGTGTGCTCCCGGGTCCTTCAGCTTAGCTCTCTGGA  700

seq1  GGCCAAGATCCTTTGCCACCTTGAGATTCAGCCAAAGGCTTCAGCAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGATCCTTTGCCACCTTGAGATTCAGCCAAAGGCTTCAGCAATAA  750

seq1  TAGTTCCCTCCCCTTTCCCAGAGACCAGCTTCCTCCCTGCAAAGAGTCCC  800
      ||||||||||||||||||||||||||||| |||| ||||||||||||| |
seq2  TAGTTCCCTCCCCTTTCCCAGAGACCAGCCTCCTGCCTGCAAAGAGTCGC  800

seq1  CTCCCTACAACCTATCCCCTTCCACTGTTTTAGAGTTCTGTTCCACTAGA  850
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTACTACCTATCCCCTTCCACTGTTTTAGAGTTCTGTTCCACTAGA  850

seq1  ACAGAACTCAGGGTGATCAATTCGTTCTGGCTTCATGGTCTTTGCAAAAC  900
      ||||||||||||||||||||            | ||  | |||  ||| |
seq2  ACAGAACTCAGGGTGATCAA------------TAATATTATTT--AAAGC  886

seq1  -CGTTTTTTAACCTAGCCCGGAATCCTCCATTTTTTTCTGCGATATTTAT  949
        ||||||     || |      |  | |||  || | |||  |||||| 
seq2  TAGTTTTTCTTTTTATC------TAATACATGATTAT-TGC-TTATTTA-  927

seq1  ATCCTTTGGTTAATTTCTTTA--GTTTAAATCCTTTCATGTTGGGAGTTA  997
            ||  || | ||||||  || ||||   ||| |  || | ||| |
seq2  -----ATGTATACTGTCTTTAATGTGTAAA--ATTTGA--TTTGCAGTGA  968

seq1  TTAAGACAACTCTATTGTCTTGATCTCTGAATTGGGCCTCTCCCCCCAAG  1047
                  | ||| |||  ||||| |     | ||||         
seq2  -----------ATGTTG-CTT--TCTCTCA-----GTCTCT---------  990

seq1  AAGAAAAGGGGGTCAAAGCGGGCCACTGATGCACCGTTCTGAGAACAACC  1097
        |||                     |  | | |  ||||      ||  
seq2  --GAA---------------------TTTTTCTCTTTTCTTTTTTTAATT  1017

seq1  ACAGAATATTCCAGCCCTAAATCAGCGTCAGATGTCCTGACCACAAGATG  1147
      |  | || |||          |||   | | || ||           |||
seq2  A-GGTATTTTC---------TTCA--TTTACATTTC-----------ATG  1044

seq1  TAACCTGATACCACCAAGTTCCTGCTTCCCCTTGTAGCTGCCAAAAGAAA  1197
        | ||||  || |     || |||  ||||                   
seq2  CTATCTGAAGCCCC-----TCATGCCCCCCC-------------------  1070

seq1  AATTTCCACTGCCCCACCCCTCCTGCTGAGAAGTACTTCCTCTTTTGCTT  1247
                                                        
seq2  --------------------------------------------------  1070

seq1  GTGCATTTCCCCTGCCCCATTCCTCCTGCTGAGAAGTACTTTCCCTTTTG  1297
                                                        
seq2  --------------------------------------------------  1070

seq1  CTTGTGCATTTAAGCCTTGCTGAATACAGAGAGACATTGATGCTACTCAG  1347
                                                        
seq2  --------------------------------------------------  1070

seq1  ACTGCTTCCATGTCGTTCTTGTACTTGGTTTCCGTCTCTCTCTCCCCCCA  1397
                                                        
seq2  --------------------------------------------------  1070

seq1  TTTGGTTCTTAGGAAAAGGTCCCCTCGAGACCCTCGAATAACTGGACCTG  1447
                                                        
seq2  --------------------------------------------------  1070

seq1  CTGGACGGGTCACTTTCAGTGACCCTTTCATCTGCTTTTCATCTTTCAGG  1497
                                                        
seq2  --------------------------------------------------  1070

seq1  AATTTGTTTTAAAAACACAACACACCTAGCCCCCAATACACTGATAAAAT  1547
                                                        
seq2  --------------------------------------------------  1070

seq1  TGTTCTGTGTACCCGAATTCTCTTTTCTTTCCATTGGAGAAACTTTGAAG  1597
                                                        
seq2  --------------------------------------------------  1070

seq1  GGAGAAATGTGCTAGCACTTTGTTTGCCATTTTGACCTAGTTTCAACCTA  1647
                                                        
seq2  --------------------------------------------------  1070

seq1  ATTTTTACTGACCTTTCCCTGATCTTTCAATTGGATGTGGTTCCCCCCCC  1697
                                                        
seq2  --------------------------------------------------  1070

seq1  CCCACTTCTTTAAGGCTTTACGCTATTGGAAAAGAACTGTGGTTATAGCT  1747
                                                        
seq2  --------------------------------------------------  1070

seq1  ATGTAAATTTCTTAAGACTGACATATAGAACAAAATCAATTTCAATCTTA  1797
                                                        
seq2  --------------------------------------------------  1070

seq1  TCTTTTAACTCCTAGGCCCCACAGCTTAATATTAAAATTATTTCATTTCC  1847
                                                        
seq2  --------------------------------------------------  1070

seq1  CCCTTTCCTGTTCGTGTTTTCTGAGGACATTATATAATTTAAAGCTAGTT  1897
                                                        
seq2  --------------------------------------------------  1070

seq1  TTTCTTTTTATCTAATACATGATTATTGCTTATTTAATTGTATTACTGTC  1947
                                                        
seq2  --------------------------------------------------  1070

seq1  TTTAATGTGTAAAATTTAATTTTGCAGTGAATGTTGCTTTCTCTCAGTCT  1997
                                                        
seq2  --------------------------------------------------  1070

seq1  CTGAATTTTTTCTCTTTTCTTTTTTTAATTAGGTATTTTCTTCATTTACA  2047
                                                        
seq2  --------------------------------------------------  1070

seq1  TTTCCAATGCTATCCTAAAAGCCCCCTCATGCCCTCCCC  2086
                                             
seq2  ---------------------------------------  1070