BAC Information

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BAC

Clone NameB6Ng01-079F12
ChromosomeX (Build37)
Map Location 104,079,075 - 104,239,680
singlet/doubletdoublet
Overlap geneGpr23
Upstream geneAtrx, 2610529C04Rik, Cox7b, Atp7a, Tlr13, LOC671297, Pgk1, Taf9b, 5031408O05Rik, EG333563, LOC622494, Gm784, Cysltr1, EG331493, LOC668490, LOC100042772, LOC100043263, Zcchc5
Downstream geneP2ry10, A630033H20Rik, Gpr174, LOC668502, LOC622613, LOC385404, Itm2a, 4933401B06Rik, Tbx22, 2610002M06Rik, Gm732
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079F12.bB6Ng01-079F12.g
ACCDH894780DH894781
length1,1551,155
definitionDH894780|Mus musculus domesticus DNA, BAC clone: B6Ng01-079F12, 5' end.DH894781|Mus musculus domesticus DNA, BAC clone: B6Ng01-079F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,238,519 - 104,239,680)(104,079,075 - 104,080,239)
sequence
gaattcaaacaagcagaaactcacttctaggtgaggtaggtgactgagtg
aaagcactgacatttactattgacagatagaaacttgaagatactcagag
gtttttccttttaaatttgaaaagtcggtgagaaacaacacctcaaccct
aagcccagtgtgtccccactgcatgagtaatatggagagaaagaggaaca
gatgtagccaccaaacccagacactattgcatatgccagaaagattttgc
tgaagggactctgttatagatgtctcttgtgaggctatgccagtgcctgg
caaatacagaagtggatgttcacagtcatctataagatggaacacagggc
ccccaatggagaagctagagagagcacccaaggagctgaaggggtctgca
accctataggtggaacaacaatatgaactaaccagtaccccctgagctcg
tatctctgcatatgtagcagaagatggcctagttggccatcagtggaaag
agaggcccatcgatcttgcaaactttatatgcctcagtacaggggaacgc
cagggccaagaagtgggagtgagagggtaggggagcagggcagggggagg
gtatagggaactttcgggatagcatttgaaatgtatataaagaaaatatc
taaggaaaaaaaaagaagaaaaagaaagaaaaggggcacaaacacattgc
aaacagaaaagtcctttgacccaagagctgcatgacactcttgtatgaaa
agttattacctggtatctcaatataaaagcctgttattataacaagtaac
cattttcagaaggtactcttcaagcttcttaatcaggggtgcattttcca
tgctacttgccaatatctactctatagctcagtgtagccccagaagagca
caactgaagcaagctcattgaaaaatatatttaaattaggtgaggatgtg
gaacaaagactaatttcctttcctttgacaccagtagctcaggctaaagg
aggctggaaatctgagcaggtgtatgtgatcatacaaagaatccggtctc
agaaactctggttctgttcaactaatatagtttctttttctaccagatag
ctttagggacttggtaatcagaaatggaaagagatcagcattcaccctgt
tctgg
gaattctttggaagacataatacctggtgttctgctctaaaatagaaatc
ttcctattctttgccttattgccgtttatctaaaaataaatgtatgcata
attttgtatttcatagtcttaaattttcactaaaactgaagggaaaacct
aatttcctagactatccaaatgtgtctagaatttttaaattaaatatacc
ctttaggtgcccatttcagaaagtctctaaaattagaaaggtaaagcata
gacaatttgaattattagtacattatactaagtaatgttatagcttttaa
atcaattttccatcttgagccaaacatcattcaagccagaattcctattc
tgcagtatattttccagtgagacaagttgtagaattactgttatttccaa
cctccatttctttttaaattagcatgcaaggtattatcatggaatgtttg
agcaaagtatgttttagtgattctgcttcctcctggtcctcactatattt
tcccaaaatttcagaccattaccatcctcttgaatattaacccattccat
acaaatggcatcagcttggttcctagcagacacataactctttgatcctt
gatattctacaaaatggtaatattttattgacaaaaacctgtgctgaggg
tatgtttaatttcatgaaactggataattgttatgaagtttcttgactgg
atacttatcctgcatgagattccttgagagaatttattataggtcagctg
gttttgcctttccaaaatgatctataagaatgactattttacctttaaaa
atgcttaaaaagcaacattcttgttttattttgaaacaccaaattatgtt
aacttgatatcagctggaagaagattcatccagtcagttttctcacagta
ccttcacttatagaggttttatatttctttgttacacatttataggtaga
cacacacaaatgcacatgagctctcatgcttgcaataacacattggattt
attcagccacaaggggtgaaatgacttctatttctcaaattgaaatactg
gatcttataaatgaaatagcctacctagaacaaaatgcatgttttctctc
attttatggcaatagttttctaatgtatccatgaaatgagatatattggt
acaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_104238519_104239680
seq2: B6Ng01-079F12.b_48_1202 (reverse)

seq1  CCAGAAACAGGGTG-ATGCTGATCTCTTTTCATTTCTGGATATCACAAGT  49
      |||| ||||||||| |||||||||||||| ||||||||  ||   |||||
seq2  CCAG-AACAGGGTGAATGCTGATCTCTTTCCATTTCTGATTA--CCAAGT  47

seq1  CCTGTAAAGCCTATCTGGTAGGAAAAGAAACTATATTAGTTTGAACAG-A  98
      ||  ||||| ||||||||||| ||||||||||||||||| |||||||| |
seq2  CC-CTAAAG-CTATCTGGTAGAAAAAGAAACTATATTAG-TTGAACAGAA  94

seq1  CCAGAGTTTTCTGAGACCCGGATTCTTTGTATGATCACATACACCTGCTC  148
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  CCAGAG-TTTCTGAGA-CCGGATTCTTTGTATGATCACATACACCTGCTC  142

seq1  AGATTTCCAGCCTCCTTTAGCCTGAGCTACTGGTGTTCAAAGGAAAGGAA  198
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGATTTCCAGCCTCCTTTAGCCTGAGCTACTGGTG-TCAAAGGAAAGGAA  191

seq1  ATTAGTCTTTGTTCCACATCCTCACCTAATTTAAATATATTTTTCAATGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCTTTGTTCCACATCCTCACCTAATTTAAATATATTTTTCAATGA  241

seq1  GCTTGCTTCAGTTGTGCTCTTCTGGGGCTACACTGAGCTATAGAGTAGAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTTCAGTTGTGCTCTTCTGGGGCTACACTGAGCTATAGAGTAGAT  291

seq1  ATTGGCAAGTAGCATGGAAAATGCACCCCTGATTAAGAAGCTTGAAGAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCAAGTAGCATGGAAAATGCACCCCTGATTAAGAAGCTTGAAGAGT  341

seq1  ACCTTCTGAAAATGGTTACTTGTTATAATAACAGGCTTTTATATTGAGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTGAAAATGGTTACTTGTTATAATAACAGGCTTTTATATTGAGAT  391

seq1  ACCAGGTAATAACTTTTCATACAAGAGTGTCATGCAGCTCTTGGGTCAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTAATAACTTTTCATACAAGAGTGTCATGCAGCTCTTGGGTCAAA  441

seq1  GGACTTTTCTGTTTGCAATGTGTTTGTGCCCCTTTTCTTTCTTTTTCTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTTCTGTTTGCAATGTGTTTGTGCCCCTTTTCTTTCTTTTTCTTC  491

seq1  TTTTTTTTTCCTTAGATATTTTCTTTATATACATTTCAAATGCTATCCCG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCCTTAGATATTTTCTTTATATACATTTCAAATGCTATCCCG  541

seq1  AAAGTTCCCTATACCCTCCCCCTGCCCTGCTCCCCTACCCTCTCACTCCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCCCTATACCCTCCCCCTGCCCTGCTCCCCTACCCTCTCACTCCC  591

seq1  ACTTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAG  641

seq1  ATCGATGGGCCTCTCTTTCCACTGATGGCCAACTAGGCCATCTTCTGCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATGGGCCTCTCTTTCCACTGATGGCCAACTAGGCCATCTTCTGCTA  691

seq1  CATATGCAGAGATACGAGCTCAGGGGGTACTGGTTAGTTCATATTGTTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCAGAGATACGAGCTCAGGGGGTACTGGTTAGTTCATATTGTTGT  741

seq1  TCCACCTATAGGGTTGCAGACCCCTTCAGCTCCTTGGGTGCTCTCTCTAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTATAGGGTTGCAGACCCCTTCAGCTCCTTGGGTGCTCTCTCTAG  791

seq1  CTTCTCCATTGGGGGCCCTGTGTTCCATCTTATAGATGACTGTGAACATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCATTGGGGGCCCTGTGTTCCATCTTATAGATGACTGTGAACATC  841

seq1  CACTTCTGTATTTGCCAGGCACTGGCATAGCCTCACAAGAGACATCTATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTGTATTTGCCAGGCACTGGCATAGCCTCACAAGAGACATCTATA  891

seq1  ACAGAGTCCCTTCAGCAAAATCTTTCTGGCATATGCAATAGTGTCTGGGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTCCCTTCAGCAAAATCTTTCTGGCATATGCAATAGTGTCTGGGT  941

seq1  TTGGTGGCTACATCTGTTCCTCTTTCTCTCCATATTACTCATGCAGTGGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGCTACATCTGTTCCTCTTTCTCTCCATATTACTCATGCAGTGGG  991

seq1  GACACACTGGGCTTAGGGTTGAGGTGTTGTTTCTCACCGACTTTTCAAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACTGGGCTTAGGGTTGAGGTGTTGTTTCTCACCGACTTTTCAAAT  1041

seq1  TTAAAAGGAAAAACCTCTGAGTATCTTCAAGTTTCTATCTGTCAATAGTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGGAAAAACCTCTGAGTATCTTCAAGTTTCTATCTGTCAATAGTA  1091

seq1  AATGTCAGTGCTTTCACTCAGTCACCTACCTCACCTAGAAGTGAGTTTCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGTGCTTTCACTCAGTCACCTACCTCACCTAGAAGTGAGTTTCT  1141

seq1  GCTTGTTTGAATTC  1162
      ||||||||||||||
seq2  GCTTGTTTGAATTC  1155

seq1: chrX_104079075_104080239
seq2: B6Ng01-079F12.g_67_1221

seq1  GAATTCTTTGGAAGACATAATACCTGGTGTTCTGCTCTAAAATAGAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGAAGACATAATACCTGGTGTTCTGCTCTAAAATAGAAATC  50

seq1  TTCCTATTCTTTGCCTTATTGCCGTTTATCTAAAAATAAATGTATGCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATTCTTTGCCTTATTGCCGTTTATCTAAAAATAAATGTATGCATA  100

seq1  ATTTTGTATTTCATAGTCTTAAATTTTCACTAAAACTGAAGGGAAAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTATTTCATAGTCTTAAATTTTCACTAAAACTGAAGGGAAAACCT  150

seq1  AATTTCCTAGACTATCCAAATGTGTCTAGAATTTTTAAATTAAATATACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTAGACTATCCAAATGTGTCTAGAATTTTTAAATTAAATATACC  200

seq1  CTTTAGGTGCCCATTTCAGAAAGTCTCTAAAATTAGAAAGGTAAAGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGTGCCCATTTCAGAAAGTCTCTAAAATTAGAAAGGTAAAGCATA  250

seq1  GACAATTTGAATTATTAGTACATTATACTAAGTAATGTTATAGCTTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTTGAATTATTAGTACATTATACTAAGTAATGTTATAGCTTTTAA  300

seq1  ATCAATTTTCCATCTTGAGCCAAACATCATTCAAGCCAGAATTCCTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTTCCATCTTGAGCCAAACATCATTCAAGCCAGAATTCCTATTC  350

seq1  TGCAGTATATTTTCCAGTGAGACAAGTTGTAGAATTACTGTTATTTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTATATTTTCCAGTGAGACAAGTTGTAGAATTACTGTTATTTCCAA  400

seq1  CCTCCATTTCTTTTTAAATTAGCATGCAAGGTATTATCATGGAATGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATTTCTTTTTAAATTAGCATGCAAGGTATTATCATGGAATGTTTG  450

seq1  AGCAAAGTATGTTTTAGTGATTCTGCTTCCTCCTGGTCCTCACTATATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGTATGTTTTAGTGATTCTGCTTCCTCCTGGTCCTCACTATATTT  500

seq1  TCCCAAAATTTCAGACCATTACCATCCTCTTGAATATTAACCCATTCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAATTTCAGACCATTACCATCCTCTTGAATATTAACCCATTCCAT  550

seq1  ACAAATGGCATCAGCTTGGTTCCTAGCAGACACATAACTCTTTGATCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGGCATCAGCTTGGTTCCTAGCAGACACATAACTCTTTGATCCTT  600

seq1  GATATTCTACAAAATGGTAATATTTTATTGACAAAAACCTGTGCTGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCTACAAAATGGTAATATTTTATTGACAAAAACCTGTGCTGAGGG  650

seq1  TATGTTTAATTTCATGAAACTGGATAATTGTTATGAAGTTTCTTGACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTAATTTCATGAAACTGGATAATTGTTATGAAGTTTCTTGACTGG  700

seq1  ATACTTATCCTGCATGAGATTCCTTGAGAGAATTTATTATAGGTCAGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTATCCTGCATGAGATTCCTTGAGAGAATTTATTATAGGTCAGCTG  750

seq1  GTTTTGCCTTTCCAAAATGATCTATAAGAATGACTATTTTACCTTTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCCTTTCCAAAATGATCTATAAGAATGACTATTTTACCTTTAAAA  800

seq1  ATGCTTAAAAAGCAACATTCTTGTTTTATTTTGAAACACCAAATTATGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTAAAAAGCAACATTCTTGTTTTATTTTGAAACACCAAATTATGTT  850

seq1  AACTTGATATCAGCTGGAAGAAGATTCATCCAGTCAGTTTTCTCACAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGATATCAGCTGGAAGAAGATTCATCCAGTCAGTTTTCTCACAGTA  900

seq1  CCTTCACTTATAGAGG-TCTATATTTCCTTTGTTACAACATTTATAGGTA  949
      |||||||||||||||| | ||||||| ||||||||| |||||||||||||
seq2  CCTTCACTTATAGAGGTTTTATATTT-CTTTGTTAC-ACATTTATAGGTA  948

seq1  GACACACACAAATGCACATGAGCTCTCATGCTTGCACATACACATTGGGA  999
      ||||||||||||||||||||||||||||||||||||   |||||||||  
seq2  GACACACACAAATGCACATGAGCTCTCATGCTTGCAATAACACATTGG--  996

seq1  TTTTATTCAGCCACAAAGAGTGAAATGACTTCATATTCTCAAAAATGAAA  1049
       ||||||||||||||| | |||||||||||||   ||||| ||| |||||
seq2  ATTTATTCAGCCACAAGGGGTGAAATGACTTCTATTTCTC-AAATTGAAA  1045

seq1  TTACTGGATCTTATTAAATGAAATAAGCCTAACTTAGACAAATATTGCAT  1099
       |||||||||||| |||||||||| |||||| ||   ||||  | |||||
seq2  -TACTGGATCTTA-TAAATGAAAT-AGCCTACCTAGAACAA--AATGCAT  1090

seq1  GTTTTCTCTCATTTTATGGGTCATATGTTTTCT-ATGTATCCATGAAATG  1148
      |||||||||||||||||||  ||   ||||||| ||||||||||||||||
seq2  GTTTTCTCTCATTTTATGG--CAATAGTTTTCTAATGTATCCATGAAATG  1138

seq1  AGATATATGTGTACAAT  1165
      ||||||||  |||||||
seq2  AGATATATTGGTACAAT  1155