BAC Information

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BAC

Clone NameB6Ng01-080C24
Chromosome6 (Build37)X (Build37)
Map Location 18,834,895 - 18,835,436101,873,172 - 101,873,776
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080C24.bB6Ng01-080C24.g
ACCDH895394DH895395
length1,076874
definitionDH895394|Mus musculus domesticus DNA, BAC clone: B6Ng01-080C24, 5' end.DH895395|Mus musculus domesticus DNA, BAC clone: B6Ng01-080C24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,834,895 - 18,835,436)(101,873,172 - 101,873,776)
sequence
gaattctttgttcagctctgagccccatcttttaagggggttatttgatt
ttctggagtccaccctcttgagttctttatatatattggatattagtccc
ctatctgatttaagataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaagctttgcagtttca
tgaggtcccatttgtcaatcctcaatcttacagcacaagccattgctgtt
atattcaggaatttttcccctgtgcccatatcttcgagacttttccccac
tttctcctccataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgatcttagtacaaagggagagaaatgggtcgattcac
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatttcttggtcttcaattctattccattgg
tctacttgtctgtcactataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggtacttt
tatctttgagaagagcttttgctatcctaggttttttgttattccagatg
aatttgcagattgctctttctaattccttgaacaattgagttggaatttt
gatggggattgcattgaatctgtagattgctttttggcaagatagccatt
tttacaatgttgatcctgccaatccatgagcatgggagatctttccatct
ctgagatcttctttaatttcttttcttcaggggacttgaagtttttatca
tacagatctttgacttcccttagttagagtcacgccaagatattttatat
tatttgtgacaattggagaagggtattgttcctaatttctttctcagcct
gttattcttgtgtagaagaaaggccatgtcttttttgagtttatttttat
atcagcctacttcaccgaagctggtt
gaattcttgggacccagcaggtctcctctggagggaaggtaatggagctt
tcggggttggggcggcaggcagtgtgcagctcacttctgctggctgtgtc
ccagatgtaccttctttatttggtgttgctacagtaatactggcttcata
aaatgaatttggtattgttactacctttcctattttctagactaatatga
gaagtgtcgttagttctttttttttatatttattggccatttgtaattca
ccttttaataactgtctatttgtttcattagctcatttaacgattgggtc
atttgatgtttaggttcttttgagccctttgttcttctgagtcaaggttt
ctctgtgtaatgtctccagctatcctggaactcaatctatagtccaagct
ggccacagactcagagatctgccagcctctacctgagtgctgggattgaa
gacttgtgccactactgcccagcttgaatatttttaattagatattttct
ttatttacatttcaaatgttatcccttttcctggtttcctctccaaaaac
cccctatcccttcctcctccccctgctcaccaacccacccactgccactt
cctggccctggtatgctgctatactggggcatagaaccttcacgggataa
agggcctctcctcccattgatgttcaacaagaccatcctctgctacatat
gcactagagacatgagtcccaccatgtgttttcttttggttagtggttta
gtcccagggagctctggggttactggttagttcatattgttgttcctcct
atgggggtactttctctagctccttctttggggaccctgtgctctgtcca
atggatgactgtgagcatccactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18834895_18835436
seq2: B6Ng01-080C24.b_577_1119 (reverse)

seq1  AAACAGCTTCGGTGAAGTAGCTGGATAT-AAAATAAACTCAAACAAGTCA  49
      || |||||||||||||||||   ||||| |||||||||||||| ||| | 
seq2  AACCAGCTTCGGTGAAGTAGGCTGATATAAAAATAAACTCAAAAAAGAC-  49

seq1  ATGGCCTTTCTCTATACA-AAGAATAAACAGGCTGAGAAAGAAATTAGGG  98
      ||||||||||| | |||| |||||| ||||||||||||||||||||||| 
seq2  ATGGCCTTTCT-TCTACACAAGAAT-AACAGGCTGAGAAAGAAATTAGG-  96

seq1  AAACAACACCCTTCT-CAATAGCCACAAATAATATAAAATATCTTGGCGT  147
       ||||| |||||||| |||| | |||||||||||||||||||||||||||
seq2  -AACAATACCCTTCTCCAATTGTCACAAATAATATAAAATATCTTGGCGT  145

seq1  GACTCTAACTAA-GGAAGTGAAAGATCTGTATGATAAAAACTTCAAAT-C  195
      |||||||||||| |||||| |||||||||||||||||||||||||| | |
seq2  GACTCTAACTAAGGGAAGTCAAAGATCTGTATGATAAAAACTTCAAGTCC  195

seq1  TCTGAAG-AAAGAAATTAAAGAAGATCTCAGAAGATGGAAAAATCTCCCA  244
       |||||| ||||||||||||||||||||||| ||||||||| ||||||||
seq2  CCTGAAGAAAAGAAATTAAAGAAGATCTCAG-AGATGGAAAGATCTCCCA  244

seq1  TGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTCTCTTGCC-AA  293
      ||||||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  TGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAA  294

seq1  AAGCAATCTGCAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTC  343
      ||||||||| ||||||||||||||||||||||||||||||||||||||| 
seq2  AAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTG  344

seq1  TTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAA  393
      ||||| ||||||||| ||||||| ||||||||||||||||||||||||||
seq2  TTCAAGGAATTAGAAAGAGCAATCTGCAAATTCATCTGGAATAACAAAAA  394

seq1  ACCTAGGATAGCAAAACCTCTTCTCAAGGATAAAAGAACCTCTGGTGGAA  443
      |||||||||||||||| |||||||||| |||||||| |||||||||||||
seq2  ACCTAGGATAGCAAAAGCTCTTCTCAAAGATAAAAGTACCTCTGGTGGAA  444

seq1  TCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGGTAAAAACT  493
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACT  494

seq1  GCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTG  542
      ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCATGGTACTGGTATAGTGACAGACAAGTAGACCAATGGAATAGAATTG  543

seq1: chrX_101873172_101873776
seq2: B6Ng01-080C24.g_69_673

seq1  GAATTCTTGGGACCCAGCAGGTCTCCTCTGGAGGGAAGGTAATGGAGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGACCCAGCAGGTCTCCTCTGGAGGGAAGGTAATGGAGCTT  50

seq1  TCGGGGTTGGGGCGGCAGGCAGTGTGCAGCTCACTTCTGCTGGCTGTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGTTGGGGCGGCAGGCAGTGTGCAGCTCACTTCTGCTGGCTGTGTC  100

seq1  CCAGATGTACCTTCTTTATTTGGTGTTGCTACAGTAATACTGGCTTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGTACCTTCTTTATTTGGTGTTGCTACAGTAATACTGGCTTCATA  150

seq1  AAATGAATTTGGTATTGTTACTACCTTTCCTATTTTCTAGACTAATATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATTTGGTATTGTTACTACCTTTCCTATTTTCTAGACTAATATGA  200

seq1  GAAGTGTCGTTAGTTCTTTTTTTTTATATTTATTGGCCATTTGTAATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTCGTTAGTTCTTTTTTTTTATATTTATTGGCCATTTGTAATTCA  250

seq1  CCTTTTAATAACTGTCTATTTGTTTCATTAGCTCATTTAACGATTGGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAATAACTGTCTATTTGTTTCATTAGCTCATTTAACGATTGGGTC  300

seq1  ATTTGATGTTTAGGTTCTTTTGAGCCCTTTGTTCTTCTGAGTCAAGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATGTTTAGGTTCTTTTGAGCCCTTTGTTCTTCTGAGTCAAGGTTT  350

seq1  CTCTGTGTAATGTCTCCAGCTATCCTGGAACTCAATCTATAGTCCAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTAATGTCTCCAGCTATCCTGGAACTCAATCTATAGTCCAAGCT  400

seq1  GGCCACAGACTCAGAGATCTGCCAGCCTCTACCTGAGTGCTGGGATTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGACTCAGAGATCTGCCAGCCTCTACCTGAGTGCTGGGATTGAA  450

seq1  GACTTGTGCCACTACTGCCCAGCTTGAATATTTTTAATTAGATATTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTGCCACTACTGCCCAGCTTGAATATTTTTAATTAGATATTTTCT  500

seq1  TTATTTACATTTCAAATGTTATCCCTTTTCCTGGTTTCCTCTCCAAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACATTTCAAATGTTATCCCTTTTCCTGGTTTCCTCTCCAAAAAC  550

seq1  CCCCTATCCCTTCCTCCTCCCCCTGCTCACCAACCCACCCACTGCCACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTATCCCTTCCTCCTCCCCCTGCTCACCAACCCACCCACTGCCACTT  600

seq1  CCTGG  605
      |||||
seq2  CCTGG  605