BAC Information

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BAC

Clone NameB6Ng01-080N08
ChromosomeX (Build37)
Map Location 97,757,740 - 97,900,681
singlet/doubletdoublet
Overlap geneDgat2l3, LOC620734, P2ry4, Arr3, Pdzd11, Kif4
Upstream geneLOC100042947, Pcna-ps1, EG620592, Eda, Dgat2l4, Otud6a, Igbp1, LOC668257
Downstream geneGdpd2, Dlg3, Tex11, LOC668271, LOC100042392, Slc7a3, Snx12, Mllt7, Gm614, Il2rg, Med12, Nlgn3, LOC100042407, Gjb1, Zmym3, Nono, Itgb1bp2, LOC620837, Taf1, Ogt, LOC620865
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080N08.bB6Ng01-080N08.g
ACCDH895858DH895859
length932855
definitionDH895858|Mus musculus domesticus DNA, BAC clone: B6Ng01-080N08, 5' end.DH895859|Mus musculus domesticus DNA, BAC clone: B6Ng01-080N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,757,740 - 97,758,666)(97,899,824 - 97,900,681)
sequence
gaattctcaactgaggaatactgaatggctgttgaagcacctgaaaaaaa
tgttcaacatccttaatcatcagggaaatgcaaagcaaaacagctctaag
attccacctcacaccagtcagaatggctaagatcaaaaattcaggtggca
gcagatgctggcgaggatgtggagaaagaggaacactcctccattgctgg
tgggattgcaagcttgtacaaccactctggaaatcagtctggcggttcct
cagaaaattggacatagtactaccggaagatccagcaattcctctcctgg
gcatataaccagaaggtgctccaacttgtaataaggacacatgccccact
tgctgctcttaactcagggagtaggtgctgaagaggttagaaatgatgtc
aatagtatgcaaaaaattaaatttcaaaaaggaaaagtaagggttgataa
attaataacattaaaattaagaccgtaagattaaggcaatgtacaaaata
gggaaaaagaactcaaacaagtatggagcacctactgtgtgccagccact
atcaacagtcttttgattgtgccaatgtgtgtgtacagacaatccctgtg
tgtagtagtttcaactcagaatgacttccaaaaggcccatgtgttgttaa
aagcttgatcctcagtttggtgatattgggaggtgatagaacctttgggg
aggtacagctctattagaatgcatttgggtggtttgcagtttgtttttga
aaggaatactgagaatctggcctctttcctatctgtctctctttgtttct
cagcttccccctctgccacactcttcccactatgatgtgctgggctccca
ggggctccaaaaacgagctctgactgagttatctcaaaccgtgagcaaaa
agaagctttcgcctcgatctgctgcttatctc
gaattctctcttctttatttttttgatcctaaatttttttaattattatt
tttccatctatttttttcattcattcactctacaccctgatctcagctcc
cctctcttcccagtctctctcccacatggcccttctgccatcacccctct
ccttcagctctgagaagggagaggtctctcctgggtaccaacccaccctg
cacattgagtcgctgcaggactaggctcatcttctcccactgaggccaga
ctaggaggcccagttaggggaacgggatccgcaggcagcttgttctttga
cagcacattgaagatgtatcttttggaaaataaggatttcaggcagacct
tccaattctgtatttacttttaaatcagaggaaagttatttcctattccc
agtgcatggaaggagaatagcagttcgaggtgttcataccttcattctag
ctgcagtgctttccatcccacggctctgagtctctttgcgtttttctgca
acctccttttgcttttgcagagcatccttaagacgtttgttggcagctgc
tgcctaaaaacaaaaggccgagtggttatgctgaaggacatttttaattt
gtagcatctcagcaaacaaattctaggtttcaattcctaaaaggaaccag
gtttttaagttaccatggacatgataattgatgaatagctactgcttcag
aatgcgcaagaggacaggtatatttaaagaaaatcccacaggctaaaact
gtctgggaatgtcatgtattgtcagtagtctgttttgttttgttaaaaaa
agccatattagaaagaaaattcactttgaatgatacagttcagcccaggt
tttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_97757740_97758666
seq2: B6Ng01-080N08.b_35_966

seq1  GAATTCTCAACTGAGGAATACTGAATGGCTG-AGAAGCACCTGAAAAAAA  49
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  GAATTCTCAACTGAGGAATACTGAATGGCTGTTGAAGCACCTGAAAAAAA  50

seq1  TGTTCAACATCCTTAATCATCAGGGAAATGCAAAGCAAAACAGCTCTAAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAACATCCTTAATCATCAGGGAAATGCAAAGCAAAACAGCTCTAAG  100

seq1  ATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGGCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGGCA  150

seq1  GCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGG  200

seq1  TGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCT  250

seq1  CAGAAAATTGGACATAGTACTACCGGAAGATCCAGCAATTCCTCTCCTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATTGGACATAGTACTACCGGAAGATCCAGCAATTCCTCTCCTGG  300

seq1  GCATATAACCAGAAGGTGCTCCAACTTGTAATAAGGACACATGCCCCACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATAACCAGAAGGTGCTCCAACTTGTAATAAGGACACATGCCCCACT  350

seq1  TGCTGCTCTTAACTCAGGGAGTAGGTGCTGAAGAGGTTAGAAATGATGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTCTTAACTCAGGGAGTAGGTGCTGAAGAGGTTAGAAATGATGTC  400

seq1  AATACTATGCAAAAAATTAAATTTCAAAAAGGAAAAGTAAGGGTTGATAA  449
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTATGCAAAAAATTAAATTTCAAAAAGGAAAAGTAAGGGTTGATAA  450

seq1  ATTAATAACATTAAAATTAAGACCGTAAGATTAAGGCAATGTACAAAATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAACATTAAAATTAAGACCGTAAGATTAAGGCAATGTACAAAATA  500

seq1  GGGAAAAAGAACTCAAACAAGTATGGAGCACCTACTGTGTGCCAGCCACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAAGAACTCAAACAAGTATGGAGCACCTACTGTGTGCCAGCCACT  550

seq1  ATCAACAGTCTTTTGATTGTGCCAATGTGTGTGTACAGACAATCCCTGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAGTCTTTTGATTGTGCCAATGTGTGTGTACAGACAATCCCTGTG  600

seq1  TGTAGTAGTTTCAACTCAGAATGACTTCCAAAAGGCCCATGTGTTGTTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTAGTTTCAACTCAGAATGACTTCCAAAAGGCCCATGTGTTGTTAA  650

seq1  AAGCTTGATCCTCAGTTTGGTGATATTGGGAGGTGATAGAACCTTT-GGG  698
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAGCTTGATCCTCAGTTTGGTGATATTGGGAGGTGATAGAACCTTTGGGG  700

seq1  AGGTACAGC-CTATTAGAATGCAGTTGGGTGGTTTGCAGTTTGTTTTTGA  747
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  AGGTACAGCTCTATTAGAATGCATTTGGGTGGTTTGCAGTTTGTTTTTGA  750

seq1  AAGGAATACTGAGAATCTGGCCTC-TTCCTATCTGTCTCTC-TTGTTTCT  795
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  AAGGAATACTGAGAATCTGGCCTCTTTCCTATCTGTCTCTCTTTGTTTCT  800

seq1  CAGCTGCCCCCTCTGCCACACTC-TCCCACTATGATGTGCTGGGCTCCAA  844
      ||||| ||||||||||||||||| |||||||||||||||||||||||| |
seq2  CAGCTTCCCCCTCTGCCACACTCTTCCCACTATGATGTGCTGGGCTCCCA  850

seq1  GGGGCTCCAAAAACGAGCTCTGACTGAGTTATCTCAAACCGTGAGCAAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCCAAAAACGAGCTCTGACTGAGTTATCTCAAACCGTGAGCAAAA  900

seq1  ATGAAGCTTTCGCCTCGATCTGCTGCTTAGCTC  927
      | ||||||||||||||||||||||||||| |||
seq2  A-GAAGCTTTCGCCTCGATCTGCTGCTTATCTC  932

seq1: chrX_97899824_97900681
seq2: B6Ng01-080N08.g_71_925 (reverse)

seq1  ATAAAACCTGGGCTGAAAACTGTATCATTCAAATGTGAATTTTTCTTTCT  50
      |||||||||||||||  |||||||||||||||| ||||| ||||||||||
seq2  ATAAAACCTGGGCTG--AACTGTATCATTCAAA-GTGAA-TTTTCTTTCT  46

seq1  AATATGGCTTTTTTCTAACAAAAACAAAACAGACTACTGACAATACATGA  100
      |||||||||||||| |||| ||||||||||||||||||||||||||||||
seq2  AATATGGCTTTTTT-TAAC-AAAACAAAACAGACTACTGACAATACATGA  94

seq1  CATTCCCAGACAGTTTTAGCCTGTGGGATTTTCTTTAAATATACCTGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCAGACAGTTTTAGCCTGTGGGATTTTCTTTAAATATACCTGTCC  144

seq1  TCTTGCGCATTCTGAAGCAGTAGCTATTCATCAATTATCATGTCCATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCGCATTCTGAAGCAGTAGCTATTCATCAATTATCATGTCCATGGT  194

seq1  AACTT-AAAACCTGGTTCC-TTTAGGAATTGAAACCTAGAATTTGTTTGC  248
      ||||| ||||||||||||| ||||||||||||||||||||||||||||||
seq2  AACTTAAAAACCTGGTTCCTTTTAGGAATTGAAACCTAGAATTTGTTTGC  244

seq1  TGAGATGCTACAAATT-AAAATGTCCTTCAGCATAACCACTCGGCCTTTT  297
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGAGATGCTACAAATTAAAAATGTCCTTCAGCATAACCACTCGGCCTTTT  294

seq1  GTTTTTAGGCAGCAGCTGCCAACAAACGTCTTAAGGATGCTCTGCAAAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGGCAGCAGCTGCCAACAAACGTCTTAAGGATGCTCTGCAAAAG  344

seq1  CAAAAGGAGGTTGCAGAAAAACGCAAAGAGACTCAGAGCCGTGGGATGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAGGTTGCAGAAAAACGCAAAGAGACTCAGAGCCGTGGGATGGA  394

seq1  AAGCACTGCAGCTAGAATGAAGGTATGAACACCTCGAACTGCTATTCTCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTGCAGCTAGAATGAAGGTATGAACACCTCGAACTGCTATTCTCC  444

seq1  TTCCATGCACTGGGAATAGGAAATAACTTTCCTCTGATTTAAAAGTAAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGCACTGGGAATAGGAAATAACTTTCCTCTGATTTAAAAGTAAAT  494

seq1  ACAGAATTGGAAGGTCTGCCTGAAATCCTTATTTTCCAAAAGATACATCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTGGAAGGTCTGCCTGAAATCCTTATTTTCCAAAAGATACATCT  544

seq1  TCAATGTGCTGTCAAAGAACAAGCTGCCTGCGGATCCCGTTCCCCTAACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTGCTGTCAAAGAACAAGCTGCCTGCGGATCCCGTTCCCCTAACT  594

seq1  GGGCCTCCTAGTCTGGCCTCAGTGGGAGAAGATGAGCCTAGTCCTGCAGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCCTAGTCTGGCCTCAGTGGGAGAAGATGAGCCTAGTCCTGCAGC  644

seq1  GACTCAATGTGCAGGGTGGGTTGGTACCCAGGAGAGACCTCTCCCTTCTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAATGTGCAGGGTGGGTTGGTACCCAGGAGAGACCTCTCCCTTCTC  694

seq1  AGAGCTGAAGGAGAGGGGTGATGGCAGAAGGGCCATGTGGGAGAGAGACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGAAGGAGAGGGGTGATGGCAGAAGGGCCATGTGGGAGAGAGACT  744

seq1  GGGAAGAGAGGGGAGCTGAGATCAGGGTGTAGAGTGAATGAATGAAAAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGAGGGGAGCTGAGATCAGGGTGTAGAGTGAATGAATGAAAAAA  794

seq1  ATAGATGGAAAAATAATAATTAAAAAAATTTAGGATCAAAAAAATAAAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGGAAAAATAATAATTAAAAAAATTTAGGATCAAAAAAATAAAGA  844

seq1  AGAGAGAATTC  858
      |||||||||||
seq2  AGAGAGAATTC  855