BAC Information

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BAC

Clone NameB6Ng01-081B21
ChromosomeX (Build37)
Map Location 41,693,337 - 41,818,802
singlet/doubletdoublet
Overlap geneWdr40c
Upstream geneGm362, LOC100039977, LOC100039987, LOC637141
Downstream geneWdr40b, LOC665585, 1110059M19Rik, LOC100040038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081B21.bB6Ng01-081B21.g
ACCDH896060DH896061
length1,0101,127
definitionDH896060|Mus musculus domesticus DNA, BAC clone: B6Ng01-081B21, 5' end.DH896061|Mus musculus domesticus DNA, BAC clone: B6Ng01-081B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,693,337 - 41,694,001)(41,817,675 - 41,818,802)
sequence
gaattcactccttgccagacccttagagtccattatgactatggctgtgg
tttggcatgtagcatgcttactgtatgtcaattaagtggaatgaagtttt
ggaaggccagatcagtatagtagggaagttttctagaggaggcatcttat
ggtctgaattctgtagctccagctagaaatatttcaaattattgtttcta
aaagcaatcagtaaagtagaataaaatagagatcactctaataaattaag
aaaaccattcatggtcttaattattaattcaaaaatgacattgaaaacaa
taaacagaaacagaaattggagagcacaaaaacttgagtcaaataaaaat
cgagaaacttgggagcagatgaccttaaacaggaaaataattttttttaa
tttgaaaaaagtgctcttgaaagaaatctgaaatgagtgataatagcctc
tgagaaatacagtgcagcataattccaaaaatatttgaagtttaggtcca
tgtaaaagagagaggaaataaaacatagggaatatatttaatgaaataat
agttgaacattttctcaaaagataagcacatataaatataagaggtttaa
agcacccttactccccaaatagtttttttatctcaaaaaggtccattgtg
agatagatttaactcaaactgtcaaaagtggaaagcaagaaatttctaaa
aacagtgagagaaaagtaccaggcacatttaaaggaaccttccattagac
taatgacaagttttaagcagagacattattgcccaggagaaaatgggtga
cattttcaaattcctgaagttaaaaataaactgcaagctgccaaccaaga
atgctaaatccagcaatgacatactttagacgtgaatgataaataacata
tttctaagagaagcaaaactgggggaattaattatcatttgaatggcctt
acatggatatttaagcatttgtacaaagagcagaatgaaagatatttcca
cctttaaact
gaattcctggagagccagagctacataatgagacattgtctcaaaaacaa
aacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaacaaca
acaagttgtacttacagtctctggccctgggatcctgagaaaattttggg
tgttcgcacttcttatgtggttgatgggttggcaaagaaatacacaactt
ttgattttagaatgtagcgagtataatttctggaagacattttttttttt
caaaataaatggtatgtctgtttttgaaaaaaagaaaaagaatataatca
aaatatagtgcatgtaatgaaagtttttaaataaaatattttctttggaa
atgtattgtaatataattgataataagcccaaataaaaatataaatatgc
aaagaaatgaagatgagcttagaatacttagaaattattttagagaaatc
atgaaatatatactgctttaaaagatttatgtgcagtataaagctttggg
atggttaaaaagtattaattcaaacattaaaataacttattgattgattt
ttatgtgctagttttattgaaaatatggttatttatacaatcagttgtaa
gtataattctttgtcttattctatcacacaataactggtattaaaataat
caacttcccaaagttatgtgggagtttaggactctttcacaacttttcag
tctttcactaatatttctaacataaaatgtggtggtgtcagtcctctata
ttttattcttcatttatttctcattgcctatggaaacacattgacttatt
agtgtgacctttcatgggcccactactcagcctcattcaaatactcctaa
tatccttttgagatttgctgtgcttacttataggactgccacaagaatat
tttcatacaccatcttattcaacagggtcctatcattagccgatgtctca
ttaatcaaatcatctactctgatatttttgagtacaagaggtatatttta
tagttacatgatgatttcacaaatggtactataaatcaccaatgttggta
tggtgctcatgtatagatctattacgaaaaacaatgtttcaaaaagctat
tttggtagtaacaaactgatggctttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_41693337_41694001
seq2: B6Ng01-081B21.b_46_710

seq1  GAATTCACTCCTTGCCAGACCCTTAGAGTCCATTATGACTATGGCTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCTTGCCAGACCCTTAGAGTCCATTATGACTATGGCTGTGG  50

seq1  TTTGGCATGTAGCATGCTTACTGTATGTCAATTAAGTGGAATGAAGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCATGTAGCATGCTTACTGTATGTCAATTAAGTGGAATGAAGTTTT  100

seq1  GGAAGGCCAGATCAGTATAGTAGGGAAGTTTTCTAGAGGAGGCATCTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCCAGATCAGTATAGTAGGGAAGTTTTCTAGAGGAGGCATCTTAT  150

seq1  GGTCTGAATTCTGTAGCTCCAGCTAGAAATATTTCAAATTATTGTTTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGAATTCTGTAGCTCCAGCTAGAAATATTTCAAATTATTGTTTCTA  200

seq1  AAAGCAATCAGTAAAGTAGAATAAAATAGAGATCACTCTAATAAATTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATCAGTAAAGTAGAATAAAATAGAGATCACTCTAATAAATTAAG  250

seq1  AAAACCATTCATGGTCTTAATTATTAATTCAAAAATGACATTGAAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATTCATGGTCTTAATTATTAATTCAAAAATGACATTGAAAACAA  300

seq1  TAAACAGAAACAGAAATTGGAGAGCACAAAAACTTGAGTCAAATAAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGAAACAGAAATTGGAGAGCACAAAAACTTGAGTCAAATAAAAAT  350

seq1  CGAGAAACTTGGGAGCAGATGACCTTAAACAGGAAAATAATTTTTTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAAACTTGGGAGCAGATGACCTTAAACAGGAAAATAATTTTTTTTAA  400

seq1  TTTGAAAAAAGTGCTCTTGAAAGAAATCTGAAATGAGTGATAATAGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAAAAGTGCTCTTGAAAGAAATCTGAAATGAGTGATAATAGCCTC  450

seq1  TGAGAAATACAGTGCAGCATAATTCCAAAAATATTTGAAGTTTAGGTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATACAGTGCAGCATAATTCCAAAAATATTTGAAGTTTAGGTCCA  500

seq1  TGTAAAAGAGAGAGGAAATAAAACATAGGGAATATATTTAATGAAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAGAGAGAGGAAATAAAACATAGGGAATATATTTAATGAAATAAT  550

seq1  AGTTGAACATTTTCTCAAAAGATAAGCACATATAAATATAAGAGGTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAACATTTTCTCAAAAGATAAGCACATATAAATATAAGAGGTTTAA  600

seq1  AGCACCCTTACTCCCCAAATAGTTTTTTTATCTCAAAAAGGTCCATTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCTTACTCCCCAAATAGTTTTTTTATCTCAAAAAGGTCCATTGTG  650

seq1  AGATAGATTTAACTC  665
      |||||||||||||||
seq2  AGATAGATTTAACTC  665

seq1: chrX_41817675_41818802
seq2: B6Ng01-081B21.g_69_1195 (reverse)

seq1  CAAAG-CATCAGTTTGTAACTA-CAAAATAGCTTTTTTTAAACATTGTTT  48
      ||||| ||||||||||| |||| ||||||||| ||||| |||||||||||
seq2  CAAAGCCATCAGTTTGTTACTACCAAAATAGC-TTTTTGAAACATTGTTT  49

seq1  TCTGTAATAGTACTATACATGAAGCAACCAATCAACATTGGTGA-TTATA  97
      |  |||||||  ||||||||| |||| |  | |||||||||||| |||||
seq2  TTCGTAATAGATCTATACATG-AGCACCATACCAACATTGGTGATTTATA  98

seq1  GTGACAATTGTGAAATCATCATGTAACTATTAAATTATAACCTCTTTGTA  147
      ||  || |||||||||||||||||||||| |||| ||| ||||| |||||
seq2  GTACCATTTGTGAAATCATCATGTAACTA-TAAAATAT-ACCTC-TTGTA  145

seq1  CTCAAAAATATCAGAGTAGATGATTTGATTAATGAGACATCGGCTAATGA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAATATCAGAGTAGATGATTTGATTAATGAGACATCGGCTAATGA  195

seq1  TAGGACCTTGTTGAATAAGATGGTGTTATGAAAATATTCTTGTGGCAGTC  247
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  TAGGACCCTGTTGAATAAGATGGTG-TATGAAAATATTCTTGTGGCAGTC  244

seq1  CTATAAGTAAGCACAGCAAATCTCAAAAGGATATTAGGAGTATTTGAATG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGTAAGCACAGCAAATCTCAAAAGGATATTAGGAGTATTTGAATG  294

seq1  AGGCTGAGTAGTGGG-CCATGAAAGGTCACACTAATAAGTCAATGTGTTT  346
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGTAGTGGGCCCATGAAAGGTCACACTAATAAGTCAATGTGTTT  344

seq1  CCATAGGCAATGAGAAATAAATGAAGAATAAAATATAGAGGACTGACACC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGCAATGAGAAATAAATGAAGAATAAAATATAGAGGACTGACACC  394

seq1  ACCACATTTTATGTTAGAAATATTAGTGAAAGACTGAAAAGTTGTGAAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATTTTATGTTAGAAATATTAGTGAAAGACTGAAAAGTTGTGAAAG  444

seq1  AGTCCT-AACTCCCACATAACTTTGGGAAGTTGATTATTTTAATACCAGT  495
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTAAACTCCCACATAACTTTGGGAAGTTGATTATTTTAATACCAGT  494

seq1  TATTGTGTGATAGAATAAGACAAAGAATTATACTTACAACTGATTGTATA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGTGATAGAATAAGACAAAGAATTATACTTACAACTGATTGTATA  544

seq1  AATAACCATATTTTCAATAAAACTAGCACATAAAAATCAATCAATAAGTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCATATTTTCAATAAAACTAGCACATAAAAATCAATCAATAAGTT  594

seq1  ATTTTAATGTTTGAATTAATACTTTTTAACCATCCCAAAGCTTTATACTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATGTTTGAATTAATACTTTTTAACCATCCCAAAGCTTTATACTG  644

seq1  CACATAAATCTTTTAAAGCAGTATATATTTCATGATTTCTCTAAAATAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAATCTTTTAAAGCAGTATATATTTCATGATTTCTCTAAAATAAT  694

seq1  TTCTAAGTATTCTAAGCTCATCTTCATTTCTTTGCATATTTATATTTTTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGTATTCTAAGCTCATCTTCATTTCTTTGCATATTTATATTTTTA  744

seq1  TTTGGGCTTATTATCAATTATATTACAATACATTTCCAAAGAAAATATTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGCTTATTATCAATTATATTACAATACATTTCCAAAGAAAATATTT  794

seq1  TATTTAAAAACTTTCATTACATGCACTATATTTTGATTATATTCTTTTTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAAACTTTCATTACATGCACTATATTTTGATTATATTCTTTTTC  844

seq1  TTTTTTTCAAAAACAGACATACCATTTATTTTGAAAAAAAAAAATGTCTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCAAAAACAGACATACCATTTATTTTGAAAAAAAAAAATGTCTT  894

seq1  CCAGAAATTATACTCGCTACATTCTAAAATCAAAAGTTGTGTATTTCTTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATTATACTCGCTACATTCTAAAATCAAAAGTTGTGTATTTCTTT  944

seq1  GCCAACCCATCAACCACATAAGAAGTGCGAACACCCAAAATTTTCTCAGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCCATCAACCACATAAGAAGTGCGAACACCCAAAATTTTCTCAGG  994

seq1  ATCCCAGGGCCAGAGACTGTAAGTACAACTTGTTGTTGTTGTTTTGTTTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGGGCCAGAGACTGTAAGTACAACTTGTTGTTGTTGTTTTGTTTT  1044

seq1  GTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTGAGACAATG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTGAGACAATG  1094

seq1  TCTCATTATGTAGCTCTGGCTCTCCAGGAATTC  1128
      |||||||||||||||||||||||||||||||||
seq2  TCTCATTATGTAGCTCTGGCTCTCCAGGAATTC  1127