BAC Information

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BAC

Clone NameB6Ng01-081E07
ChromosomeX (Build37)
Map Location 142,491,081 - 142,649,794
singlet/doubletdoublet
Overlap geneLOC237096, LOC100039558
Upstream geneZcchc16, LOC623591, Lhfpl1, Amot, EG434860, LOC100039313, LOC623697, LOC623731
Downstream geneEG666730, EG245663, Htr2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081E07.bB6Ng01-081E07.g
ACCDH896170DH896171
length1,027949
definitionDH896170|Mus musculus domesticus DNA, BAC clone: B6Ng01-081E07, 5' end.DH896171|Mus musculus domesticus DNA, BAC clone: B6Ng01-081E07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,648,770 - 142,649,794)(142,491,081 - 142,492,033)
sequence
gaattcagtgattacactaccttcatgtctattgtataacctctgaattg
aatatgatacagaatgaaaaagtttgaaagaggtggtaatatctatttta
accagaactgggtatgatgcattatagttaaaattaagatgtaattgatc
agtgctcagaaattttaatatatttcttcttcataacattatatgatact
ataaagctaacccacatggtaatatatttatacaaatatattgaaatatt
aatattggaatttcactaataaaatgtttaacaggctgaaaaattacatg
tatagaattttggaatttaatgagaagaaaactgaaaacagctaagagct
cactgtacttaaatgatatgttacagatcaaatgataagtacattgcaag
aatatattttcagagcttaaaatgactttaaagataatccatacataatc
tttcatttacaaatagaaaatggaaagccagtgaagtgatttgatttgcc
ccaggccccaaggcctctggctggcagaacttctacaaggacatcacttt
cttttattcagtttactcctattttcagatgatcaacatttttcatttta
aagctcactaatttcattgcaattgatgtagcattaataactgtgtttgt
tatatatatgacaattaggagtcatttctatttctaatttttctagtacc
actcttttatgtattttgtacctatatcagttgaatctatacaagatctc
tgagtataaaataaaattagttaatatatttgatcaaagatggggtttga
ggtcttatagatacaagggttttttccactgatagtatccagaagatttt
atgaatgaatgtatacaatactgtttttaatgatatattatatattttat
tctatttattctcttattttaattctattaataatttcatatatgtacac
tacacatttaagtcattttcagcacattctaatttcctgaaaccctttgt
ctcaaaaaagtgcttcttttaagttat
gaattctcttccaacaacctaacacagaacttaacacaatgaggaaaact
cacattaaactgaaacagaagctgaaaatattttaaaaattattcattaa
tatctctaagttaatagaaaggctctatcattagctctatcattccatct
agttggaagagcatggtatatcattactttcagtttttgttgttttcctt
agaaagaggtttattcttacagcaacagaatttatctacttgtgaattag
ttctgcaacagacagtattttcacacatgatggatttctaagtataaaca
ttgcatggaaattacaatatttgaggttttagaccttaaacatatctaac
gaagtaggttctggtaagtctctctttgtcctgaaatttgtcagttttac
aaaatttaatagagctctatgttatagagagaagatggcaataaggttga
ggtttttttttttttaactttgcttcaaatttgtttatgactttgaaaaa
tcatttgcaattcctacataatgagaataattatacttttgtctgcatgt
taaatgaaagaattttaaagtctaaatgatattaatgtgtgtaagaatac
cttagaaaatataaatgatatttcaagtagaaataaacactaatttttac
ctcaaccaaccacgatttaaccaggctgcaaattattttaattaaaacta
tccttttttgcagaaaagtctaaagagtctcaaacactgttttgtgcaaa
tgcaaatatatttctagtgttgggtgagaggtattgatagcatcagtgca
ttggtgataatgttgtttatccttgaaaatgtttattggatggaataatc
tatttcatataatgtatatcttaatagcatatgggattgagcaaaatatt
cccaggcatttgcaataataactccatattatgaaatcatcttgaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_142648770_142649794
seq2: B6Ng01-081E07.b_45_1069 (reverse)

seq1  AACTTAAAAGAAGCACTTTTTTGAGACAAAAGGTTTCAGGGAAATTAGAA  50
      |||||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  AACTTAAAAGAAGCACTTTTTTGAGACAAAGGGTTTCA-GGAAATTAGAA  49

seq1  TTGTGCTGAAAATGACTTAAATGTGTAGTGTACATATATGAAATTATTAA  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGTGCTGAAAATGACTTAAATGTGTAGTGTACATATATGAAATTATTAA  98

seq1  TAGAATTAAAAATAAGAGAATAAATAGAATAAAATATATAATATATCATT  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATT-AAAATAAGAGAATAAATAGAATAAAATATATAATATATCATT  147

seq1  -AAAACAGTATTGTATACATTCATTCATAAAATCTTCTGGATACTTATCA  199
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAAAACAGTATTGTATACATTCATTCATAAAATCTTCTGGATAC-TATCA  196

seq1  GTGGAAAAAACCCTTGTATCTATAAGACCTCAAACCCCATCTTTGATCAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAAAACCCTTGTATCTATAAGACCTCAAACCCCATCTTTGATCAA  246

seq1  ATATATTAACTAATTTTA-TTTATACTCAGAGATCTTGTATAGATTCAAC  298
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATATATTAACTAATTTTATTTTATACTCAGAGATCTTGTATAGATTCAAC  296

seq1  TGATATAGGTACAAAATACAT-AAAGAGTGGTACTAG-AAAATTAGAAAT  346
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  TGATATAGGTACAAAATACATAAAAGAGTGGTACTAGAAAAATTAGAAAT  346

seq1  AGAAATGACTCCTAATTGTCATATATATAACAAACACAGTTATTAATGCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGACTCCTAATTGTCATATATATAACAAACACAGTTATTAATGCT  396

seq1  ACATCAATTGCAATGAAATTAGTGAGCTTTAAAATGAAAAATGTTGATCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAATTGCAATGAAATTAGTGAGCTTTAAAATGAAAAATGTTGATCA  446

seq1  TCTGAAAATAGGAGTAAACTGAATAAAAGAAAGTGATGTCCTTGTAGAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAATAGGAGTAAACTGAATAAAAGAAAGTGATGTCCTTGTAGAAG  496

seq1  TTCTGCCAGCCAGAGGCCTTGGGGCCTGGGGCAAATCAAATCACTTCACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCAGCCAGAGGCCTTGGGGCCTGGGGCAAATCAAATCACTTCACT  546

seq1  GGCTTTCCATTTTCTATTTGTAAATGAAAGATTATGTATGGATTATCTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCCATTTTCTATTTGTAAATGAAAGATTATGTATGGATTATCTTT  596

seq1  AAAGTCATTTTAAGCTCTGAAAATATATTCTTGCAATGTACTTATCATTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCATTTTAAGCTCTGAAAATATATTCTTGCAATGTACTTATCATTT  646

seq1  GATCTGTAACATATCATTTAAGTACAGTGAGCTCTTAGCTGTTTTCAGTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTAACATATCATTTAAGTACAGTGAGCTCTTAGCTGTTTTCAGTT  696

seq1  TTCTTCTCATTAAATTCCAAAATTCTATACATGTAATTTTTCAGCCTGTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCATTAAATTCCAAAATTCTATACATGTAATTTTTCAGCCTGTT  746

seq1  AAACATTTTATTAGTGAAATTCCAATATTAATATTTCAATATATTTGTAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTATTAGTGAAATTCCAATATTAATATTTCAATATATTTGTAT  796

seq1  AAATATATTACCATGTGGGTTAGCTTTATAGTATCATATAATGTTATGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTACCATGTGGGTTAGCTTTATAGTATCATATAATGTTATGAA  846

seq1  GAAGAAATATATTAAAATTTCTGAGCACTGATCAATTACATCTTAATTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATATATTAAAATTTCTGAGCACTGATCAATTACATCTTAATTTT  896

seq1  AACTATAATGCATCATACCCAGTTCTGGTTAAAATAGATATTACCACCTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAATGCATCATACCCAGTTCTGGTTAAAATAGATATTACCACCTC  946

seq1  TTTCAAACTTTTTCATTCTGTATCATATTCAATTCAGAGGTTATACAATA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACTTTTTCATTCTGTATCATATTCAATTCAGAGGTTATACAATA  996

seq1  GACATGAAGGTAGTGTAATCACTGAATTC  1025
      |||||||||||||||||||||||||||||
seq2  GACATGAAGGTAGTGTAATCACTGAATTC  1025

seq1: chrX_142491081_142492033
seq2: B6Ng01-081E07.g_73_1020

seq1  GAATTCTCTTCCAACAACCTAACACAGAACTTAACACAATGAGGAAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCAACAACCTAACACAGAACTTAACACAATGAGGAAAACT  50

seq1  CACATTAAACTGAAACAGAAGCTGAAAATATTTTAAAAATTATTCATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAAACTGAAACAGAAGCTGAAAATATTTTAAAAATTATTCATTAA  100

seq1  TATCTCTAAGTTAATAGAAAGGCTCTATCATTAGCTCTATCATTCCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTAAGTTAATAGAAAGGCTCTATCATTAGCTCTATCATTCCATCT  150

seq1  AGTTGGAAGAGCATGGTATATCATTACTTTCAGTTTTTGTTGTTTTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGAAGAGCATGGTATATCATTACTTTCAGTTTTTGTTGTTTTCCTT  200

seq1  AGAAAGAGGTTTATTCTTACAGCAACAGAATTTATCTACTTGTGAATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGGTTTATTCTTACAGCAACAGAATTTATCTACTTGTGAATTAG  250

seq1  TTCTGCAACAGACAGTATTTTCACACATGATGGATTTCTAAGTATAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAACAGACAGTATTTTCACACATGATGGATTTCTAAGTATAAACA  300

seq1  TTGCATGGAAATTACAATATTTGAGGTTTTAGACCTTAAACATATCTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGGAAATTACAATATTTGAGGTTTTAGACCTTAAACATATCTAAC  350

seq1  GAAGTAGGTTCTGGTAAGTCTCTCTTTGTCCTGAAATTTGTCAGTTTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGGTTCTGGTAAGTCTCTCTTTGTCCTGAAATTTGTCAGTTTTAC  400

seq1  AAAATTTAATAGAGCTCTATGTTATAGAGAGAAGATGGCAATAAGGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAATAGAGCTCTATGTTATAGAGAGAAGATGGCAATAAGGTTGA  450

seq1  GGTTTTTTTTTTTTTAACTTTGCTTCAAATTTGTTTATGACTTTGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTTTTTTTAACTTTGCTTCAAATTTGTTTATGACTTTGAAAAA  500

seq1  TCATTTGCAATTCCTACATAATGAGAATAATTATACTTTTGTCTGCATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGCAATTCCTACATAATGAGAATAATTATACTTTTGTCTGCATGT  550

seq1  TAAATGAAAGAATTTTAAAGTCTAAATGATATTAATGTGTGTAAGAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAAAGAATTTTAAAGTCTAAATGATATTAATGTGTGTAAGAATAC  600

seq1  CTTAGAAAATATAAATGATATTTCAAGTAGAAAT-AACACTAATTTTTAC  649
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTAGAAAATATAAATGATATTTCAAGTAGAAATAAACACTAATTTTTAC  650

seq1  CTCAACCAACCACGATTTAACCA-GCTGCAAATTATTTCAATTAAAACTA  698
      ||||||||||||||||||||||| |||||||||||||| |||||||||||
seq2  CTCAACCAACCACGATTTAACCAGGCTGCAAATTATTTTAATTAAAACTA  700

seq1  TCC-TTATTGCAGAAAAGTCTAAAGAGTCTCAAACACTGTTTTGTGCAAA  747
      ||| || |||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTTGCAGAAAAGTCTAAAGAGTCTCAAACACTGTTTTGTGCAAA  750

seq1  TGCAAATATATTTCTAGTGTTTGGTGAGAGGTATTGATAGCATCAGGTGC  797
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  TGCAAATATATTTCTAGTGTTGGGTGAGAGGTATTGATAGCATCA-GTGC  799

seq1  ATTGGTGATAATGTTGTTTATCC-TGAAAATGTTTATTGGAATGGAATAA  846
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  ATTGGTGATAATGTTGTTTATCCTTGAAAATGTTTATTGG-ATGGAATAA  848

seq1  TCTATTTCATTATAATGTATTATCTTAATAGCATATGGATTGGAGCAAAA  896
      ||||||||| ||||||||| ||||||||||||||||||  | ||||||||
seq2  TCTATTTCA-TATAATGTA-TATCTTAATAGCATATGGGATTGAGCAAAA  896

seq1  ATAATTTCCATGCTATTTGCAATAATAACTCCATATTATGCAAATTCATC  946
         ||| ||| || ||||||||||||||||||||||||||  || |||||
seq2  --TATTCCCAGGC-ATTTGCAATAATAACTCCATATTATG--AAATCATC  941

seq1  TTGAACA  953
      |||||||
seq2  TTGAACA  948