BAC Information

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BAC

Clone NameB6Ng01-081E18
ChromosomeX (Build37)
Map Location 49,624,803 - 49,808,394
singlet/doubletdoublet
Overlap geneGpc3
Upstream geneHs6st2, Usp26, LOC100040479, LOC665888, 1700080O16Rik, LOC100040495, Gpc4
Downstream geneKis2, LOC100041925, LOC665929, 6330534C20Rik, LOC624936, LOC546298, LOC100040569, Phf6, Hprt1, C430049B03Rik, Plac1, 4632404H22Rik, 4930432H15Rik, LOC385527, Mospd1, LOC100040609, Etd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081E18.bB6Ng01-081E18.g
ACCDH896192DH896193
length1,087775
definitionDH896192|Mus musculus domesticus DNA, BAC clone: B6Ng01-081E18, 5' end.DH896193|Mus musculus domesticus DNA, BAC clone: B6Ng01-081E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,807,295 - 49,808,394)(49,624,803 - 49,625,580)
sequence
gaattcacagaccctgctctggtgtgtgttttattgctttcagcttattt
cctgttctcttgattaaaaactaaaaagctctgtagaaatgacaagttta
aaaaggagcagacaccaaacattgcttactgctgtccattctgcccaggt
gaagggactccagagcaactgggaacaaaagcactaaatggggccagctt
tctgcaatgtcttgttcaaagaaagaaagaagtgcttgggaggcttagct
tttcccagtgctctgtggaggtttgtttttcctgttaagtttagaactgt
ttattttttttttctttcattctaatgtctcttgggcagatagaggagaa
acctcctgcattagcgtcatttaagtgatgctaaaagggctatcaggggg
caactgaaaatgatcagcttcgacagctcaagatggaccagctctttctt
ttcacctcctgagggtttaaacactctcaactttattaacaagaacttgc
taggacaagtctgctaagcttatctcgttccaaatgaacactttaattca
tcaccagcttacagcgactctctgaaggtttacagaaggaataccataca
aaaagctctcaggggtgcaaggcagtgatctggtactggccctagacagt
gttggttttatacacaaatatataagctatttgtgttgtgagcagtcagg
cagtggtggcctgaggggttgtgctaaaatggagttcataaaaagatatc
acccagggttcagagttgtggtatttctgaatgtggtaacttagaagaaa
attgttgaaaaaagtctgcgtggtataaggtttggtatatatttaataaa
agcattaaaccttttaattccacagaagggcattgttaaatgtatttttt
atccatcatcttagctagaaatctgaatagtttcaggacactcattaagc
ccttaaatttctatagaaatttaaacatatgctcataaatgtaactgtaa
tacctttccttgataatttttggggttgtacctttaaaaggacccagggt
tagtattttttatttaataaggcccttttaaactccc
gaattctttgttctgcttcggcccacctctctagcttatgaaaaaggaga
atactgatcttatgacttagaaagaacctgcccagaaggttttctctttg
aaattcgtgtgtctgtacctgtctatatgtatgctgatgtacattatgtg
tgctggcacatgtgaaggccagaggtaaactttaggctcttttacgttgt
ttctaccttgctttttgagacagtctctctctttctctctctctctctct
ggtctggagctcactgaataggctggctggctagcaaactcagggtttct
cctgtctctgtttttacaaagctgggattagagacacatgccactaggct
ttgctctctttgtatgggtcctggggtttgaactcaagtcttcaagcttt
caaggcaagcaagcacattagcaatggaggcatctcttcatttcaaaagg
gaagtttgtaaagagaggtcatggtggaactcttttgtgacacctttgat
ctcatacacaggacaatccaacctaaggattctcaatggaagagactggg
catgtgatataccttaagaatgggcagtttaatcaggatgcaaagccagc
attgatactcattcagaaggcataggtaaagaagtggtttgcagggtttt
tgtttgtttgtttgtttttgtttttggattgtatgggattatactgaata
gaaggccagataataagagcaaaatttggataaggaagaagtatatgacc
cttatatatatatatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_49807295_49808394
seq2: B6Ng01-081E18.b_45_1131 (reverse)

seq1  GGGAGGTTTTTAAAAAGAGCATAATTAAATAAAAAATACTTAACACCTTG  50
      |||||    || ||||| || | |||||||||||||||| |||| ||| |
seq2  GGGAG----TTTAAAAGGGCCTTATTAAATAAAAAATAC-TAAC-CCTGG  44

seq1  TTACCTATTAAAGGTACAAACACACAAAAATGTATCAAGGAAAAGTTATT  100
       | ||| ||||||||||||   | ||||||| |||||||| |||| ||||
seq2  GT-CCTTTTAAAGGTACAA--CCCCAAAAAT-TATCAAGG-AAAGGTATT  89

seq1  ACAGTTAACATATATGAGCATATGTTTAAAATTTCTATTAAGAAATTTAA  150
      |||||| |||| ||||||||||||||| ||||||||||  ||||||||||
seq2  ACAGTT-ACATTTATGAGCATATGTTT-AAATTTCTAT--AGAAATTTAA  135

seq1  GGGCTTAATGAGTGT-CTGAAACTATTCAGATTTCTAGCTAAGATGATGG  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGGCTTAATGAGTGTCCTGAAACTATTCAGATTTCTAGCTAAGATGATGG  185

seq1  AT-AAAAATACATTTAACAATGCCCTTCTGTGGAATTAAAAGGTTTAATG  248
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATACATTTAACAATGCCCTTCTGTGGAATTAAAAGGTTTAATG  235

seq1  CTTTTATTAAATATATACCAAACCTTATACCACGCAGACTTTTTTCAACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTAAATATATACCAAACCTTATACCACGCAGACTTTTTTCAACA  285

seq1  ATTTTCTTCTAAGTTACCACATTCAGAAATACCACAACTCTGAACCCTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTCTAAGTTACCACATTCAGAAATACCACAACTCTGAACCCTGG  335

seq1  GTGATATCTTTTTATGAACTCCATTTTAGCACAACCCCTCAGGCCACCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATCTTTTTATGAACTCCATTTTAGCACAACCCCTCAGGCCACCAC  385

seq1  TGCCTGACTGCTCACAACACAAATAGCTTATATATTTGTGTATAAAACCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGACTGCTCACAACACAAATAGCTTATATATTTGTGTATAAAACCA  435

seq1  ACACTGTCTAGGGCCAGTACCAGATCACTGCCTTGCACCCCTGAGAGCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTCTAGGGCCAGTACCAGATCACTGCCTTGCACCCCTGAGAGCTT  485

seq1  TTTGTATGGTATTCCTTCTGTAAACCTTCAGAGAGTCGCTGTAAGCTGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATGGTATTCCTTCTGTAAACCTTCAGAGAGTCGCTGTAAGCTGGT  535

seq1  GATGAATTAAAGTGTTCATTTGGAACGAGATAAGCTTAGCAGACTTGTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATTAAAGTGTTCATTTGGAACGAGATAAGCTTAGCAGACTTGTCC  585

seq1  TAGCAAGTTCTTGTTAATAAAGTTGAGAGTGTTTAAACCCTCAGGAGGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGTTCTTGTTAATAAAGTTGAGAGTGTTTAAACCCTCAGGAGGTG  635

seq1  AAAAGAAAGAGCTGGTCCATCTTGAGCTGTCGAAGCTGATCATTTTCAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAGAGCTGGTCCATCTTGAGCTGTCGAAGCTGATCATTTTCAGT  685

seq1  TGCCCCCTGATAGCCCTTTTAGCATCACTTAAATGACGCTAATGCAGGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCTGATAGCCCTTTTAGCATCACTTAAATGACGCTAATGCAGGAG  735

seq1  GTTTCTCCTCTATCTGCCCAAGAGACATTAGAATGAAAGAAAAAAAAAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCCTCTATCTGCCCAAGAGACATTAGAATGAAAGAAAAAAAAAAT  785

seq1  AAACAGTTCTAAACTTAACAGGAAAAACAAACCTCCACAGAGCACTGGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTCTAAACTTAACAGGAAAAACAAACCTCCACAGAGCACTGGGA  835

seq1  AAAGCTAAGCCTCCCAAGCACTTCTTTCTTTCTTTGAACAAGACATTGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAGCCTCCCAAGCACTTCTTTCTTTCTTTGAACAAGACATTGCA  885

seq1  GAAAGCTGGCCCCATTTAGTGCTTTTGTTCCCAGTTGCTCTGGAGTCCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTGGCCCCATTTAGTGCTTTTGTTCCCAGTTGCTCTGGAGTCCCT  935

seq1  TCACCTGGGCAGAATGGACAGCAGTAAGCAATGTTTGGTGTCTGCTCCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGGGCAGAATGGACAGCAGTAAGCAATGTTTGGTGTCTGCTCCTT  985

seq1  TTTAAACTTGTCATTTCTACAGAGCTTTTTAGTTTTTAATCAAGAGAACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACTTGTCATTTCTACAGAGCTTTTTAGTTTTTAATCAAGAGAACA  1035

seq1  GGAAATAAGCTGAAAGCAATAAAACACACACCAGAGCAGGGTCTGTGAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAGCTGAAAGCAATAAAACACACACCAGAGCAGGGTCTGTGAAT  1085

seq1  TC  1100
      ||
seq2  TC  1087

seq1: chrX_49624803_49625580
seq2: B6Ng01-081E18.g_71_845

seq1  GAATTCTTTGTTCTGCTTCGGCCCACCTCTCTAGCTTATGAAAAAGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCTGCTTCGGCCCACCTCTCTAGCTTATGAAAAAGGAGA  50

seq1  ATACTGATCTTATGACTTAGAAAGAACCTGCCCAGAAGGTTTTCTCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGATCTTATGACTTAGAAAGAACCTGCCCAGAAGGTTTTCTCTTTG  100

seq1  AAATTCGTGTGTCTGTACCTGTCTATATGTATGCTGATGTACATTATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCGTGTGTCTGTACCTGTCTATATGTATGCTGATGTACATTATGTG  150

seq1  TGCTGGCACATGTGAAGGCCAGAGGTAAACTTTAGGCTCTTTTACGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCACATGTGAAGGCCAGAGGTAAACTTTAGGCTCTTTTACGTTGT  200

seq1  TTCTACCTTGCTTTTTGAGACAGTCTCTCTCTTTCTCTCTCTCTCTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTTGCTTTTTGAGACAGTCTCTCTCTTTCTCTCTCTCTCTCTCT  250

seq1  GGTCTGGAGCTCACTGAATAGGCTGGCTGGCTAGCAAACTCAGGGTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGAGCTCACTGAATAGGCTGGCTGGCTAGCAAACTCAGGGTTTCT  300

seq1  CCTGTCTCTGTTTTTACAAAGCTGGGATTAGAGACACATGCCACTAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCTGTTTTTACAAAGCTGGGATTAGAGACACATGCCACTAGGCT  350

seq1  TTGCTCTCTTTGTATGGGTCCTGGGGTTTGAACTCAAGTCTTCAAGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTCTTTGTATGGGTCCTGGGGTTTGAACTCAAGTCTTCAAGCTTT  400

seq1  CAAGGCAAGCAAGCACATTAGCAATGGAGGCATCTCTTCATTTCAAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAAGCAAGCACATTAGCAATGGAGGCATCTCTTCATTTCAAAAGG  450

seq1  GAAGTTTGTAAAGAGAGGTCATGGTGGAACTCTTTTGTGACACCTTTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTGTAAAGAGAGGTCATGGTGGAACTCTTTTGTGACACCTTTGAT  500

seq1  CTCATACACAGGACAATCCAACCTAAGGATTCTCAATGGAAGAGACTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACACAGGACAATCCAACCTAAGGATTCTCAATGGAAGAGACTGGG  550

seq1  CATGTGATATACCTTAAGAATGGGCAGTTTAATCAGGATGCAAAGCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGATATACCTTAAGAATGGGCAGTTTAATCAGGATGCAAAGCCAGC  600

seq1  ATTGATACTCATTCAGAAGGCATAGGTAAAGAAGTGGTTTGCAGGGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATACTCATTCAGAAGGCATAGGTAAAGAAGTGGTTTGCAGGGTTTT  650

seq1  TGTTTGTTTGTTTGTTTTTGTTTTTGGATTGTAATGGGATTATACTGAAT  700
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTTTGTTTGTTTGTTTTTGTTTTTGGATTGT-ATGGGATTATACTGAAT  699

seq1  AGAAGGCCAGATAATAAGAGCAAAATTTGGATAAAGGAAGAAGTATATGA  750
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGAAGGCCAGATAATAAGAGCAAAATTTGGAT-AAGGAAGAAGTATATGA  748

seq1  CCCTTTATATATATATATATATATATAT  778
      ||| ||||||||||||||||||||||||
seq2  CCC-TTATATATATATATATATATATAT  775