BAC Information

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BAC

Clone NameB6Ng01-084G06
ChromosomeX (Build37)
Map Location 35,786,040 - 35,786,481
singlet/doubletsinglet
Overlap geneLamp2
Upstream geneRhox2, Rhox3, Rhox4a, LOC100039913, Rhox4b, LOC100039948, Rhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7, Rhox8, LOC436198, Rhox9, LOC100039620, 4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112
Downstream geneLOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171, LOC670539, LOC100039700, 1700085A12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084G06.bB6Ng01-084G06.g
ACCDH898366DH898367
length4411,180
definitionDH898366|Mus musculus domesticus DNA, BAC clone: B6Ng01-084G06, 5' end.DH898367|Mus musculus domesticus DNA, BAC clone: B6Ng01-084G06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
aaatcccagcaaccacatggtggctcacaaccacccgtaatgaaatctga
caccctcttctggtgtgtctgaagtcagctacagtgtacttatgtataat
aataaataaatcttaaaaataaaaaaataataataaaaaaaagaagtggt
actaaaaactagccttgaaatcgttgaagggtttaaatacaaaggaatct
tttatttctatcactcctctagcaggttattggtatttaaatcccttctt
aggaagtattagttttctagtaatgaatatgaaattattacatttccatt
aaacagtccactgtgggtctctagtgcttacattctcattcacacacact
ctctctctccctccctccctccctccctccctccctccctccctccctcc
ctttttttcacctgctctctcattgggcgtacacacacaca
gaattctgagttcgaggccagcctggtctacaaagtgagttccaggacag
ccagggctacacagagaaaccctgtctcaaaaaaaaaatgggggggggat
ctgacgccctcttctggtgtttctaaagacagctacagtgtactcataaa
aataaaaataaatctttaaaaatatattctttaaaaagcatgtactacta
ctgccctgtcattttaggcatatttaaatagttttcttgtgatagttaac
ccaatcccatgtacacaacaaagcttaaaacatgactaccttgaaagtct
tagcgaagtacaagacttatttcataaagattggttccatagattaactg
ggaaagcaggcacaagataaacaagcacatggtcagggtctgggggaggc
taatgctgtagattgagtgtggcaaacaaacaaggcaagataatggccct
gaggatccagtgaggcctggccacgcagatagcacaaaggtcaccgggct
tctgggaagaaaacaggttttacagctctctctttgaagagacaaccctg
cgcgcttaacattcctggttccctctgcatgcttgacattcctggttccc
tctgcatgctttccattcctggtttcctagtgcttgtctgtgagcacaag
gaccttcatgcctcctacagaggactaaaaaagacacttcatatgatgcc
ttgctacttaagacatttgttcctctctttccttgttctctcttccccat
tacttcattgctctgggcttttctttcttgtccttgaatcccatttctac
cttcactgccagaatcttctgttaggctgcaaagagcatgtggctagcac
acagaaggcctgtgttcaatggtcaataccatatattttttaaggtggca
tactgatactattcctggaatgtttcaacctttgaaaggtagaggcagga
ggattacaggaatggataccacaaaaagatgtcctagtgtcctaatacaa
aatataacatacttgcagatctatatacccagaaaagcaaatcccaccaa
acttttttaactggaataaaaaaaccataggtggtctaaaattttttaac
gcctcaggaactatggcattttcatttgccaatccttctttaatggaatt
caaaccttgggtacctctatgaaccttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_35786040_35786481
seq2: B6Ng01-084G06.b_43_489

seq1  GAATTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCGTAATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCGTAATGAA  50

seq1  ATCTGACACCCTCTTCTGGTGTGTCTGAAGTCAGCTACAGTGTACTTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACACCCTCTTCTGGTGTGTCTGAAGTCAGCTACAGTGTACTTATG  100

seq1  TATAATAATAAATAAATCTTAAAAATAAAAAAATAATAATAAAAAAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAATAAATAAATCTTAAAAATAAAAAAATAATAATAAAAAAAAGA  150

seq1  AGTGGTACTAAAAACTAGCCTTGAAATCGTTGAAGGGTTTAAATACAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTACTAAAAACTAGCCTTGAAATCGTTGAAGGGTTTAAATACAAAG  200

seq1  GAATCTTTTATTTCTATCACTCCTCTAGCAGGTTATTGGTATTTAAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTTTATTTCTATCACTCCTCTAGCAGGTTATTGGTATTTAAATCC  250

seq1  CTTCTTAGGAAGTATTAGTTTTCTAGTAATGAATATGAAATTATTACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAGGAAGTATTAGTTTTCTAGTAATGAATATGAAATTATTACATT  300

seq1  TCCATTAAACAGTCCACTGTGGGTCTCTAGTGCTTACATTCTCATTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTAAACAGTCCACTGTGGGTCTCTAGTGCTTACATTCTCATTCACA  350

seq1  CACACTCTCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCTCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT  400

seq1  CCCTCCC----TCCCACCTCCTCTCTCATACAG-ATACACACACACA  442
      |||||||    |  ||||| |||||||||   |  ||||||||||||
seq2  CCCTCCCTTTTTTTCACCTGCTCTCTCATTGGGCGTACACACACACA  447