BAC Information

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BAC

Clone NameB6Ng01-084K12
ChromosomeX (Build37)
Map Location 89,485,586 - 89,486,027
singlet/doubletsinglet
Overlap geneMageb18, EG668061
Upstream geneLOC667972, LOC667976, Mageb2, EG278167, EG667988, EG667993, EG385489, 1700084M14Rik, EG236891, LOC629542, Mageb5, LOC673766, LOC633484, LOC674396, EG278087, Mageb1, EG236892, EG236893, EG436259
Downstream geneEG546347, LOC629568, LOC100042663, Rp23-438h3.2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084K12.g
ACCDH898549
length1,213
definitionDH898549|Mus musculus domesticus DNA, BAC clone: B6Ng01-084K12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagacccagaaatgaacccacacacctatggccacttgatcttc
aacatgggagctaaaaccatcaagtggaagaaagacagcattttcaacaa
gtggtgctggcacaactggttgttatcatgtagaagaatgcaaatcgatc
cattcctatctccttgtactaaggtcaaatctaagtgggtcaaggaactt
cacataaaaccagagacactgaaacttatagaggagaaagtggggaaaag
gcttgaagatatgggcacaggggaaaaattcatgaatagaacagcaatgg
cttgtgctgtaagatcgagaattgacaaatgggacctcatgaaactccaa
agcttctgcaaggcaaaagacaccgtcaaaaagacaaaagggccaccaaa
agattgggaaaggatctttaactatcctaagtcagataggggactaatat
ccaatatatataaagaactcaagaaggtagacttcagaaaattcaataac
cccattaaaaaatggggctcagaactgaacaaagaattctcacctgagga
ataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatca
tcagggaaatgcaaatcaaaacaaccctgagattccacctcataccagtc
agaatggctaagatgaaaattttcaggtgacagcagatgctggtgaggat
gtggagaaagaggaacactcctccattgttggtgggatttcaagcttgta
caaccactctggaaatcagtctggtggtttcttagaaaattggacatcgt
actaccggaggatccagtaatacctcttcttgggcatatatccagaagat
gtcccaaccggtattgaaggacacatgctccactatgttcatagcagcct
tattttataatagccagaagttggaaaaacccagatgccccttcaacaga
aggaatggatacagaaaatatggtacatttacacaatggagtactacctc
agctattaaaaagaatgaatttatgaaattcctaaggcaatggatgacct
tggagggcatcatccttgagcaagtaactaatcacaagaactcacaccaa
ttgtatctccctgaatagtggaatctagcccaaacctagtataccaagga
tatagaattcattgccaaggcatgaactcttgaatgaaccaattgtgacc
ttggcccttctta
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_89485586_89486027
seq2: B6Ng01-084K12.g_1066_1281 (reverse)

seq1  TAAGAAGGGCCAAGGTAAGCACAGTCTTTTCTCTGTTGATTTCCCCTCCC  50
      ||||||||||||||||   ||||            ||| ||         
seq2  TAAGAAGGGCCAAGGT---CACA-----------ATTGGTT---------  27

seq1  CCAGCACTCCTAACCCTTACTTGGCCTGGTATTTACTCCCCTCTCAACCC  100
          || ||  ||   || | || | ||| | | |               
seq2  ----CATTC--AAGAGTT-CATGCCTTGGCAATGA---------------  55

seq1  ATAGCCCTTCTACAAACCCCTTCATGTATTCCAGCTTTTGGAAGACTCAT  150
             ||||| |    ||||   |||| | || ||| ||         
seq2  ------ATTCTATA---TCCTT--GGTATACTAGGTTTGGG---------  85

seq1  ATGCCCTTGTCACCTTTCTCTGTTGAACTTCCAGGTGCCTACCATGTAGA  200
           ||    |  || | || ||       ||||    |||        
seq2  -----CT----AGATTCCACTATT-------CAGGGAGATAC--------  111

seq1  ACAAGAAAATGCTGCGAAGGACGCTGAAAAAAAAAAAAAAAGATACCTAA  250
            || || || |                                  
seq2  ------AATTGGTGTG----------------------------------  121

seq1  GACACCACATAAAAAAGTCTTTTCTTTTGTGATTGGGTTACCTCACTC-A  299
                     |||      | ||||||||  |||| ||  ||| |
seq2  ---------------AGT------TCTTGTGATT-AGTTA-CTTGCTCAA  148

seq1  GGATGATGCCCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAATTCA  349
      ||||||||||||||| |  ||||||||  | |||||||||||||||||||
seq2  GGATGATGCCCTCCAAGGTCATCCATTGCCTTAGGAATTTCATAAATTCA  198

seq1  TTCTTTTTTTTAAATTAGGTATTTTCTTCATTTACATTTCCAATGCTATC  399
      ||||||||  ||  | ||                                
seq2  TTCTTTTTAATAGCTGAG--------------------------------  216

seq1  CAAAATTCCCCCATGCCCAAGTTGATTCTTTTTAATAGCTGAG  442
                                                 
seq2  -------------------------------------------  216