BAC Information

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BAC

Clone NameB6Ng01-086B01
ChromosomeX (Build37)
Map Location 42,828,657 - 42,949,351
singlet/doubletdoublet
Overlap geneEG385346
Upstream geneWdr40b, LOC665585, 1110059M19Rik, LOC100040038
Downstream geneLOC100040075, Actrt1, EG245405, LOC665632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086B01.bB6Ng01-086B01.g
ACCDH899564DH899565
length1,1611,100
definitionDH899564|Mus musculus domesticus DNA, BAC clone: B6Ng01-086B01, 5' end.DH899565|Mus musculus domesticus DNA, BAC clone: B6Ng01-086B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,828,657 - 42,829,833)(42,948,759 - 42,949,351)
sequence
gaattctgaatggctgagaagcacctgaaaaaatgttcaacatccttatt
catcagggcgatgtaaatcaaaaaaaccctgagattccacctcacaccag
tcagaatggctaagataaaaaattcaggtgacagcagatgctggagagga
tggggagaaagaggaacactcctacattgttggtgggattgcaagcttgt
acaaccactctggaaatcagtctggtggttcctcagaaaattggacatag
tactaccggaggatcccgcaatacctctcctgggcatatatccaaaagat
gtcccaaccggtaaaagggacacatgctccactatgttcatagcagcctt
atttataatagccattttctattattcttttgagatatgcctcttaggta
acttgctggtattatttgaattattccaggtgctttggaattatattttg
aacattttataatatataaatatatatgtatatatatatatatacacaca
tatattaagccagtgaatttgtcaattattaaatttagatgataagttta
agcatattaatttttggctttttggaaattataaaacattataaaaactt
aattaaaaacatatatatatatatatatcaaacacaaatctaaataatcc
taaaattaatatattatgtacacaaaattaaacatattttcatgcacagt
ttacttcagatgctggtgtgggtactggatataatctgaaggataagacc
attagaatgtgtttcttaccatatttactagtagaaaagtccaaaagcat
tgaaggaaataatgctacttatactacacaattcacaatttaagattaca
attcaatacatttggtgaattcccagatgtttagacccattcattcaatc
acatttctatatgtttctagcactcagtaaatattttgttttgttttgtt
ttatttgttttgttttgttttcgagacaggtttctctgtatagacttgct
gtcctggaactcacttgtagaccaggctgtctgaactatgaaatccactt
gctctgcttccatgctgagataaaggcgtgtgcaccaccgccagtccaat
ctttttaaactcaaatgtaaaattcactcgtgttccggctgagtcttaag
tgaacattaac
gaattcatccctgagaaagactaattctcttcttagcagttattggttcc
tctagggttgggaccacataagatatctatccctacttccacattattta
gtatgtttatctgtattaatcaggtcttgtttattcaaacctaagagaag
caataaggcagcagacttcctggatcttagcaatctttctaccttctatt
gtgaattattcccttagccatcaatccaggaaccattccttacatgtatc
caccaagcctggaatcctggcaatcaatggatctttgtattgtgttcaat
tatggctttcctgtcatgctctctaattgttataaagagaaatttcttgg
atgagttgttatacctggacttatccacagatataaggatgaaattcaaa
atagagttaaggaataaggctggtttatcaaagtgtcaatagcagattct
tgtctatgatttttgaacttaatacgcctgactaattgagtagatttcta
gaaccagacattatttccctcttgttgattaaaccttaattacacttagc
aacatgtgtgtcaaacactactgcacattgatatctcacgttgcttgtca
tacttgtgacacagaggtataagagcagtgcaggattaataattgagtac
ctctcttgatacctttctggaaaataaaaagaggcttaattaggaaagta
gaaggtggtagataaatcaataaacaagaagggagttggggcaccaaact
gctggaaggagcctttcttgttagattatgttcaaattatggcacatctt
cagctataaagaattacacttaatctctaagacatttccaaatgaaagat
caatagactatattgtgtggggaggcatttggactaccctgaacaaccat
tccaaaagaagtttctcatacatgataatgagacagattatttatttatt
tacttgttgtttgtttagtacaggatacttgtgtggagcattgtcagctg
aagtttgaataatatatatcatgtaatattgatgtaggcaaatataaaat
atgatctttgaggctttatcaccacataagggtgggtttggttccataat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_42828657_42829833
seq2: B6Ng01-086B01.b_45_1205

seq1  GAATTCTGAATGGCTGAGAAGCACCTGAAAAAATGTTCAACATCCTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAATGGCTGAGAAGCACCTGAAAAAATGTTCAACATCCTTATT  50

seq1  CATCAGGGCGATGTAAATCAAAAAAACCCTGAGATTCCACCTCACACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGGCGATGTAAATCAAAAAAACCCTGAGATTCCACCTCACACCAG  100

seq1  TCAGAATGGCTAAGATAAAAAATTCAGGTGACAGCAGATGCTGGAGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATGGCTAAGATAAAAAATTCAGGTGACAGCAGATGCTGGAGAGGA  150

seq1  TGGGGAGAAAGAGGAACACTCCTACATTGTTGGTGGGATTGCAAGCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGAAAGAGGAACACTCCTACATTGTTGGTGGGATTGCAAGCTTGT  200

seq1  ACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAG  250

seq1  TACTACCGGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAAAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACCGGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAAAAGAT  300

seq1  GTCCCAACCGGTAAAAGGGACACATGCTCCACTATGTTCATAGCAGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAACCGGTAAAAGGGACACATGCTCCACTATGTTCATAGCAGCCTT  350

seq1  ATTTATAATAGCCATTTTCTATTATTCTTTTGAGATATGCCTCTTAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAATAGCCATTTTCTATTATTCTTTTGAGATATGCCTCTTAGGTA  400

seq1  ACTTGCTGGTATTATTTGAATTATTCCAGGTGCTTTGGAATTATATTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTGGTATTATTTGAATTATTCCAGGTGCTTTGGAATTATATTTTG  450

seq1  AACATTTTATAATATATAAATATATATGTATATATATATATATACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTATAATATATAAATATATATGTATATATATATATATACACACA  500

seq1  TATATTAAGCCAGTGAATTTGTCAATTATTAAATTTAGATGATAAGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAAGCCAGTGAATTTGTCAATTATTAAATTTAGATGATAAGTTTA  550

seq1  AGCATATTAATTTTTGGCTTTTTGGAAATTATAAAACATTATAAAAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATTAATTTTTGGCTTTTTGGAAATTATAAAACATTATAAAAACTT  600

seq1  AATTAAAAACATATATATATATATATATCAAACACAAATCTAAATAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAACATATATATATATATATATCAAACACAAATCTAAATAATCC  650

seq1  TAAAATTAATATATTATGTACACAAAATTAAACATATTTTCATGCACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTAATATATTATGTACACAAAATTAAACATATTTTCATGCACAGT  700

seq1  TTACTTCAGATGCTGGTGTGGGTACTGGATATAATCTGAAGGATAAGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCAGATGCTGGTGTGGGTACTGGATATAATCTGAAGGATAAGACC  750

seq1  ATTAGAATGTGTTTCTTACCATATTTACTAGTAGAAAAGTCCAAAAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATGTGTTTCTTACCATATTTACTAGTAGAAAAGTCCAAAAGCAT  800

seq1  TGAAGGAAATAATGCTACTTATACTACACAATTCACAATTTAAGATTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAAATAATGCTACTTATACTACACAATTCACAATTTAAGATTACA  850

seq1  ATTCAATACATTTGGTGAATTCCCAGATGTTTAGACCCATTCATTCAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATACATTTGGTGAATTCCCAGATGTTTAGACCCATTCATTCAATC  900

seq1  ACATTTCTATATGTTTCTAGCACTCAGTAAAATATTTTTGTTTTTGTTTT  950
      |||||||||||||||||||||||||||| ||||| |||||||||   |||
seq2  ACATTTCTATATGTTTCTAGCACTCAGT-AAATA-TTTTGTTTT--GTTT  946

seq1  TGTTTTTATTTTGTTTTGTTTTGTTTTCGAGACAGGGTTTCTCTGTATAG  1000
      ||||||   ||||||||||||||||||||||||| |||||||||||||||
seq2  TGTTTT--ATTTGTTTTGTTTTGTTTTCGAGACA-GGTTTCTCTGTATAG  993

seq1  ACCTTGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGTCCTTGAACTAT  1050
      | |||||||||||||||||||| |||||||||||||||||  ||||||||
seq2  A-CTTGCTGTCCTGGAACTCAC-TTGTAGACCAGGCTGTC--TGAACTAT  1039

seq1  GAAATCCACCTGCCTCTGCCTCCCAATTGCTGAGATTAAAGGCGTGTGCC  1100
      ||||||||| || |||||| |||    |||||||| |||||||||||| |
seq2  GAAATCCACTTG-CTCTGCTTCC---ATGCTGAGA-TAAAGGCGTGTG-C  1083

seq1  ACCACCGCCAGTCAAAATCTTTTTAAACTCAAATGTAAAATATCACT-GT  1149
      |||||||||||||  |||||||||||||||||||||||||| ||||| ||
seq2  ACCACCGCCAGTC-CAATCTTTTTAAACTCAAATGTAAAAT-TCACTCGT  1131

seq1  TTCCGGGCTGAG-CCTAAGTG-ACATTAAC  1177
       | | ||||||| | |||||| ||||||||
seq2  GTTCCGGCTGAGTCTTAAGTGAACATTAAC  1161

seq1: chrX_42948759_42949351
seq2: B6Ng01-086B01.g_580_1166 (reverse)

seq1  ATTATGGGAACCAAAACCACCTTTATGTTGGTTGATAAAGCCTCAAAGAA  50
      ||||| ||||||||| ||||| ||||||  | |||||||||||||||| |
seq2  ATTAT-GGAACCAAACCCACCCTTATGT--GGTGATAAAGCCTCAAAG-A  46

seq1  TCATATTTTATATTTGCCTACAATCATATTACATGATATATA-TATTCAA  99
      ||||||||||||||||||||||   ||||||||||||||||| |||||||
seq2  TCATATTTTATATTTGCCTACATCAATATTACATGATATATATTATTCAA  96

seq1  ACTTCAGCTGACAATGCTCCACACAAGTATCCTGTACTAAAACAAACAAA  149
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  ACTTCAGCTGACAATGCTCCACACAAGTATCCTGTACT-AAACAAAC-AA  144

seq1  CAAGTAAATAAATAAATAAATCTGTCTCATTATCATGTATGAGAAACTTC  199
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAAGTAAATAAATAAAT-AATCTGTCTCATTATCATGTATGAGAAACTTC  193

seq1  TTTTGGAATGGTTGTTCAGGGTAGTCCAAATGCCTCCCCACACAATATAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAATGGTTGTTCAGGGTAGTCCAAATGCCTCCCCACACAATATAG  243

seq1  TCTATTGATCTTTCATTTGGAAATGTCTTAGAGATTAAGTGTAATTCTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGATCTTTCATTTGGAAATGTCTTAGAGATTAAGTGTAATTCTTT  293

seq1  ATAGCTGAAGATGTGCCATAATTTGAACATAATCTAACAAGAAAGGCTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGAAGATGTGCCATAATTTGAACATAATCTAACAAGAAAGGCTCC  343

seq1  TTCCAGCAGTTTGGTGCCCCAACTCCCTTCTTGTTTATTGATTTATCTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCAGTTTGGTGCCCCAACTCCCTTCTTGTTTATTGATTTATCTAC  393

seq1  CACCTTCTACTTTCCTAATTAAGCCTCTTTTTATTTTCCAGAAAGGTATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCTACTTTCCTAATTAAGCCTCTTTTTATTTTCCAGAAAGGTATC  443

seq1  AAGAGAGGTACTCAATTATTAATCCTGCACTGCTCTTATACCTCTGTGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGTACTCAATTATTAATCCTGCACTGCTCTTATACCTCTGTGTC  493

seq1  ACAAGTATGACAAGCAACGTGAGATATCAATGTGCAGTAGTGTTTGACAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTATGACAAGCAACGTGAGATATCAATGTGCAGTAGTGTTTGACAC  543

seq1  ACATGTTGCTAAGTGTAATTAAGGTTTAATCAACAAGAGGGAAA  593
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTGCTAAGTGTAATTAAGGTTTAATCAACAAGAGGGAAA  587