BAC Information

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BAC

Clone NameB6Ng01-087E01
ChromosomeX (Build37)13 (Build37)
Map Location 139,411,392 - 139,411,42791,591,029 - 91,592,142
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC622901, EG436234, EG622956, Gucy2f, LOC623006, LOC100039023, Nxt2, EG434858, Kcne1l, Acsl4, Ppia-psx_1100.1, EG633736, EG245651, LOC100039086, EG436235, Tmem164, Ammecr1
Downstream geneRgag1, LOC209541, Chrdl1, Pak3, Capn6, Dcx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087E01.bB6Ng01-087E01.g
ACCDH900433DH900434
length6761,094
definitionDH900433|Mus musculus domesticus DNA, BAC clone: B6Ng01-087E01, 5' end.DH900434|Mus musculus domesticus DNA, BAC clone: B6Ng01-087E01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(139,411,392 - 139,411,427)(91,591,029 - 91,592,142)
sequence
gaattcaatgaaaataaactcacaacatatctaaacttatgggacacaat
aaaagtggtactaaaaagttcatttcactaagtgccttcacaaagaatta
gagagatcttgtgacaggattttccctgtccaattacattaaaatattat
tgcagcaagaagcctgcaattggacaaggagagaggctgagttaagagct
gcagggacagagctgtcttgggagagaaggaaggacaagatggaggcaga
tggacaagaagaagaacctgaacaagcgtagctttaaatagtcacaggta
gttataatatcataaaggttagaataattgggataatttgtctaatctag
atgataagcttttatcattatcaactcattctgaaatttttgtgctggca
ttttgtcaactgagaatttgctgatgtataaatctgacttgttacttata
agcttctagagttttgtttctacccggttgctgggtgttgtggaggctga
ccgttggtggacagtcattgtgtgggactagctgggcaaggaagggaact
caggagctctagccctgccagtgagtttgcaggcagagagtagcccagtg
ggaactagtggctccagggacaaaaccagagttgagaacacagtgatcag
tcactgtgtgtgtgtgtggggggggg
gaattcactctaggacaaaatcaataagaggaaaactttgggatacttag
tctccaggatctttctgtgggcttcccggggactgggattatttggccca
agactgttctcccttgagaccaaaatgagtctgaggccagacagtgtgtg
agttggatggggccccactgagctggagagacaacaggaaatgtgatgag
aggaaaaaagacaactataacaatagaaggaggaagtgaagccataaagc
aagagaaggaggaaaagtaactgtgagttacacaaaggccaagaggaaag
gaaaaccagacagaagcacatagctaaacaacacaagttctacagggaag
attgcagcctgctgacagagctccaggatacctggtctttgattttatat
ttaccagtccccagaggaaggtcatgtatggtcggatgactaaatggaca
gagaaacacccagcttcctctcttcctaaggggaatgtgaactgaagact
gccatattaaggctttatgtatcatgggccatacagacacgcagatgtaa
atattatctgaaagaggaacaaacaagataatgagtgcaaagacaaagga
gagtctactgtttcatttagtaaaggaagaaatgtatctcttttaaatag
ggaaaaagaaacagttgtcatttctcctcattctctgtctctgtctctct
gtctctctgtctctgtctctctctgtctctgtctctctgtctctctctgt
ctctgtctctctctctgtctctgtctctgtctctctctctgtcttgtttt
tttggagacagagtttctctgtatagccctggttatcctggaactcactc
tgtagaccagtctagccttgaactcagaaatctgcctgcctatgcctccc
aagtgctgagattaaaggcatgggccacccctgcctggcatttctctcta
gtatcttatagcgagcatagcgtatccttcaagtagtaaaatgagagtat
gaggagctgctatgacgagctcaagtagcagactgactcagattatgccc
atcgaggacttactcaggctcaatacaccccaggcccaccatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_139411392_139411427
seq2: B6Ng01-087E01.b_683_718

seq1  CAGTGTTCAGTCACAGTGTGTGTGTGTGGGGGGGGG  36
      ||||| |||||||| |||||||||||||||||||||
seq2  CAGTGATCAGTCACTGTGTGTGTGTGTGGGGGGGGG  36

seq1: chr13_91591029_91592142
seq2: B6Ng01-087E01.g_67_1160

seq1  GAATTCACTCTAGGACAAAATCAATAAGAGGAAAACTTTGGGATACTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTAGGACAAAATCAATAAGAGGAAAACTTTGGGATACTTAG  50

seq1  TCTCCAGGATCTTTCTGTGGGCTTCCCGGGGACTGGGATTATTTGGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGATCTTTCTGTGGGCTTCCCGGGGACTGGGATTATTTGGCCCA  100

seq1  AGACTGTTCTCCCTTGAGACCAAAATGAGTCTGAGGCCAGACAGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTTCTCCCTTGAGACCAAAATGAGTCTGAGGCCAGACAGTGTGTG  150

seq1  AGTTGGATGGGGCCCCACTGAGCTGGAGAGACAACAGGAAATGTGATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGATGGGGCCCCACTGAGCTGGAGAGACAACAGGAAATGTGATGAG  200

seq1  AGGAAAAAAGACAACTATAACAATAGAAGGAGGAAGTGAAGCCATAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAGACAACTATAACAATAGAAGGAGGAAGTGAAGCCATAAAGC  250

seq1  AAGAGAAGGAGGAAAAGTAACTGTGAGTTACACAAAGGCCAAGAGGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGGAGGAAAAGTAACTGTGAGTTACACAAAGGCCAAGAGGAAAG  300

seq1  GAAAACCAGACAGAAGCACATAGCTAAACAACACAAGTTCTACAGGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCAGACAGAAGCACATAGCTAAACAACACAAGTTCTACAGGGAAG  350

seq1  ATTGCAGCCTGCTGACAGAGCTCCAGGATACCTGGTCTTTGATTTTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGCCTGCTGACAGAGCTCCAGGATACCTGGTCTTTGATTTTATAT  400

seq1  TTACCAGTCCCCAGAGGAAGGTCATGTATGGTCGGATGACTAAATGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGTCCCCAGAGGAAGGTCATGTATGGTCGGATGACTAAATGGACA  450

seq1  GAGAAACACCCAGCTTCCTCTCTTCCTAAGGGGAATGTGAACTGAAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACACCCAGCTTCCTCTCTTCCTAAGGGGAATGTGAACTGAAGACT  500

seq1  GCCATATTAAGGCTTTATGTATCATGGGCCATACAGACACGCAGATGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATTAAGGCTTTATGTATCATGGGCCATACAGACACGCAGATGTAA  550

seq1  ATATTATCTGAAAGAGGAACAAACAAGATAATGAGTGCAAAGACAAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATCTGAAAGAGGAACAAACAAGATAATGAGTGCAAAGACAAAGGA  600

seq1  GAGTCTACTGTTTCATTTAGTAAAGGAAGAAATGTATCTCTTTTAAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTACTGTTTCATTTAGTAAAGGAAGAAATGTATCTCTTTTAAATAG  650

seq1  GGAAAAAGAAACAGTTGTCATTTCTCCTCATTCTCTGTCTCTGTCTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGAAACAGTTGTCATTTCTCCTCATTCTCTGTCTCTGTCTCTCT  700

seq1  GTCTCTCTGTCTCTGTCTCTCTCTGTCTCTGTCTCTCTGTCTCTCTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTGTCTCTGTCTCTCTCTGTCTCTGTCTCTCTGTCTCTCTCTGT  750

seq1  CTCTGTCTCTCTCTCTGTCTCTGTCTCTGTCTCTCTCTCTGTCTTGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTCTCTCTCTGTCTCTGTCTCTGTCTCTCTCTCTGTCTTGTTTT  800

seq1  TTTGGAGACAGAGTTTCTCTGTATAGCCCTGGTTATCCTGGAACTCACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGACAGAGTTTCTCTGTATAGCCCTGGTTATCCTGGAACTCACTC  850

seq1  TGTAGACCAGTCTAGCCTTGAACTCAGAAATCTGCCTGCCTATGCCTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGTCTAGCCTTGAACTCAGAAATCTGCCTGCCTATGCCTCCC  900

seq1  AAGTGCTGAGATTAAAGGCATGGGCCACCCCTGCCTGGCATTTCTCCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||| 
seq2  AAGTGCTGAGATTAAAGGCATGGGCCACCCCTGCCTGGCATTTCT-CTC-  948

seq1  TAGTATCTTATAGCGAGCCATAGCGTATCCTTCAAAGTAGTAAAAATGAG  1000
      ||||||||||||||||| ||||||||||||||| ||||||| ||||||||
seq2  TAGTATCTTATAGCGAG-CATAGCGTATCCTTC-AAGTAGT-AAAATGAG  995

seq1  AAGTAATGAGGAGCCTGCCTAAGGACGAGGCTCAAAGGTAGCAGACTGAC  1050
       ||| |||||||| ||||   | ||||| ||||||  |||||||||||||
seq2  -AGT-ATGAGGAG-CTGC--TATGACGA-GCTCAA--GTAGCAGACTGAC  1037

seq1  TCAGGATTATTGCCCAATCAGAGGACTTAACTTCAGGAGCTCAATACACC  1100
      ||| ||||| ||||| ||| |||||||||   ||||  ||||||||||||
seq2  TCA-GATTA-TGCCC-ATC-GAGGACTTA--CTCAG--GCTCAATACACC  1079

seq1  CCA-GCCCACCATAT  1114
      ||| |||||||||||
seq2  CCAGGCCCACCATAT  1094